guix/gnu/packages/patches/dealii-mpi-deprecations.patch
Eric Bavier 40b114c0bb
gnu: dealii: Upgrade to 9.0.1.
* gnu/packages/patches/dealii-mpi-deprecations.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/maths.scm (dealii)[source]: Upgrade to 9.0.1.  Use patch.
[arguments]: Use new MPI configuration flags.
2019-02-13 22:39:12 -06:00

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From 40538ad31a71495649d174b0f7be5f7135d0a905 Mon Sep 17 00:00:00 2001
From: David Wells <drwells@email.unc.edu>
Date: Sat, 2 Feb 2019 10:00:38 -0500
Subject: [PATCH] Avoid calling a deprecated MPI function.
This was deprecated a long time ago (1996) and is not present in the
latest version of openMPI (4.0): see
https://www.open-mpi.org/faq/?category=mpi-removed
Credit goes to Pratik Nayak for finding this issue.
---
source/base/mpi.cc | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/source/base/mpi.cc b/source/base/mpi.cc
index bd1f7f9846a..b8cd45e7c26 100644
--- a/source/base/mpi.cc
+++ b/source/base/mpi.cc
@@ -448,7 +448,7 @@ namespace Utilities
MPI_Aint displacements[] = {0, offsetof(MinMaxAvg, min_index)};
MPI_Datatype types[] = {MPI_DOUBLE, MPI_INT};
- ierr = MPI_Type_struct(2, lengths, displacements, types, &type);
+ ierr = MPI_Type_create_struct(2, lengths, displacements, types, &type);
AssertThrowMPI(ierr);
ierr = MPI_Type_commit(&type);