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guix/gnu/packages/patches/python-3-fix-tests.patch
Marius Bakke a91cf65a7e
gnu: Python: Update to 3.10.7. 
* gnu/packages/python.scm (python-3.9): Rename to ...
(python-3.10): ... this.  Update to 3.10.7.
[source](patches): Remove 'python-3-no-static-libs.patch' in favor of ...
[arguments]: Add #:configure-flags.
(python-3): Refer to PYTHON-3.10.
* gnu/packages/patches/python-3-fix-tests.patch: Refresh.
* gnu/packages/patches/python-3-no-static-lib.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/version-control.scm (mercurial)[native-search-paths]: Adjust
Python version.
* gnu/packages/admin.scm (ansible)[native-search-paths]: Likewise.
* gnu/packages/bioinformatics.scm (scvelo)[arguments]: Replace hard-coded
python3.9 paths with python3.10.
* gnu/packages/cran.scm (r-torch)[arguments]: Likewise.
* gnu/packages/machine-learning.scm (liblantern)[arguments]: Likewise.
2022-09-18 17:06:05 +02:00

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From f0698133e7d6c353a3e6ae0fc62e57ba558a9bc0 Mon Sep 17 00:00:00 2001
From: Maxim Cournoyer <maxim.cournoyer@gmail.com>
Date: Wed, 28 Oct 2020 22:55:05 -0400
Subject: [PATCH] Skip problematic Python 3 tests in Guix.
A subset of the hunks in this patch is tracked upstream at
https://bugs.python.org/issue38845, which was contributed by Tanguy Le
Carrour <tanguy@bioneland.org>.
diff --git a/Lib/ctypes/test/test_callbacks.py b/Lib/ctypes/test/test_callbacks.py
index d8e9c5a760..94fc5929c9 100644
--- a/Lib/ctypes/test/test_callbacks.py
+++ b/Lib/ctypes/test/test_callbacks.py
@@ -5,6 +5,7 @@
from ctypes import *
from ctypes.test import need_symbol
import _ctypes_test
+import platform
class Callbacks(unittest.TestCase):
functype = CFUNCTYPE
@@ -178,6 +179,8 @@ def func(x):
self.assertLess(diff, 0.01, "%s not less than 0.01" % diff)
+ @unittest.skipIf(platform.machine() in ['mips64'],
+ "This test fails on this platform")
def test_issue_8959_a(self):
from ctypes.util import find_library
libc_path = find_library("c")
diff --git a/Lib/ctypes/test/test_find.py b/Lib/ctypes/test/test_find.py
index 1ff9d019b1..5194954914 100644
--- a/Lib/ctypes/test/test_find.py
+++ b/Lib/ctypes/test/test_find.py
@@ -117,6 +117,7 @@ def test_find_library_with_gcc(self):
with unittest.mock.patch("ctypes.util._findSoname_ldconfig", lambda *args: None):
self.assertNotEqual(find_library('c'), None)
+ @unittest.skipIf(True, "ldconfig is not used on Guix")
def test_find_library_with_ld(self):
with unittest.mock.patch("ctypes.util._findSoname_ldconfig", lambda *args: None), \
unittest.mock.patch("ctypes.util._findLib_gcc", lambda *args: None):
diff --git a/Lib/ctypes/test/test_libc.py b/Lib/ctypes/test/test_libc.py
index 56285b5ff8..c088ab3db8 100644
--- a/Lib/ctypes/test/test_libc.py
+++ b/Lib/ctypes/test/test_libc.py
@@ -2,6 +2,7 @@
from ctypes import *
import _ctypes_test
+import platform
lib = CDLL(_ctypes_test.__file__)
@@ -17,6 +18,8 @@ def test_sqrt(self):
import math
self.assertEqual(lib.my_sqrt(2.0), math.sqrt(2.0))
+ @unittest.skipIf(platform.machine() in ['mips64'],
+ "This test fails on this platform")
def test_qsort(self):
comparefunc = CFUNCTYPE(c_int, POINTER(c_char), POINTER(c_char))
lib.my_qsort.argtypes = c_void_p, c_size_t, c_size_t, comparefunc
diff --git a/Lib/distutils/tests/test_archive_util.py b/Lib/distutils/tests/test_archive_util.py
index edcec2513e..a716150763 100644
--- a/Lib/distutils/tests/test_archive_util.py
+++ b/Lib/distutils/tests/test_archive_util.py
@@ -335,6 +335,7 @@ def test_make_archive_xztar(self):
self.assertEqual(os.path.basename(res), 'archive.tar.xz')
self.assertEqual(self._tarinfo(res), self._created_files)
+ @unittest.skipIf(True, "getgrgid(0)[0] raises a KeyError on Guix")
def test_make_archive_owner_group(self):
# testing make_archive with owner and group, with various combinations
# this works even if there's not gid/uid support
@@ -364,6 +365,7 @@ def test_make_archive_owner_group(self):
@unittest.skipUnless(ZLIB_SUPPORT, "Requires zlib")
@unittest.skipUnless(UID_GID_SUPPORT, "Requires grp and pwd support")
+ @unittest.skipIf(True, "getgrgid(0)[0] raises a KeyError on Guix")
def test_tarfile_root_owner(self):
tmpdir = self._create_files()
base_name = os.path.join(self.mkdtemp(), 'archive')
diff --git a/Lib/distutils/tests/test_sdist.py b/Lib/distutils/tests/test_sdist.py
index 752e9db5ba..c66b6323e4 100644
--- a/Lib/distutils/tests/test_sdist.py
+++ b/Lib/distutils/tests/test_sdist.py
@@ -444,6 +444,7 @@ def test_manual_manifest(self):
"The tar command is not found")
@unittest.skipIf(find_executable('gzip') is None,
"The gzip command is not found")
+ @unittest.skipIf(True, "getgrgid(0)[0] raises a KeyError on Guix")
def test_make_distribution_owner_group(self):
# now building a sdist
dist, cmd = self.get_cmd()
diff --git a/Lib/test/_test_multiprocessing.py b/Lib/test/_test_multiprocessing.py
index 8dced90c53..59947e3023 100644
--- a/Lib/test/_test_multiprocessing.py
+++ b/Lib/test/_test_multiprocessing.py
@@ -1589,6 +1589,7 @@ def _test_wait_result(cls, c, pid):
if pid is not None:
os.kill(pid, signal.SIGINT)
+ @unittest.skipIf(True, "This fails for unknown reasons on Guix")
def test_wait_result(self):
if isinstance(self, ProcessesMixin) and sys.platform != 'win32':
pid = os.getpid()
@@ -4008,6 +4009,7 @@ def test_shared_memory_across_processes(self):
sms.close()
@unittest.skipIf(os.name != "posix", "not feasible in non-posix platforms")
+ @unittest.skipUnless(sys.stdin.isatty(), "KeyboardInterrupts require a TTY device")
def test_shared_memory_SharedMemoryServer_ignores_sigint(self):
# bpo-36368: protect SharedMemoryManager server process from
# KeyboardInterrupt signals.
diff --git a/Lib/test/test_asyncio/test_base_events.py b/Lib/test/test_asyncio/test_base_events.py
index d77bf95a7b..79912c8230 100644
--- a/Lib/test/test_asyncio/test_base_events.py
+++ b/Lib/test/test_asyncio/test_base_events.py
@@ -1359,6 +1359,8 @@ def test_create_connection_no_inet_pton(self, m_socket):
self._test_create_connection_ip_addr(m_socket, False)
@patch_socket
+ @unittest.skipUnless(support.is_resource_enabled('network'),
+ 'network is not enabled')
def test_create_connection_service_name(self, m_socket):
m_socket.getaddrinfo = socket.getaddrinfo
sock = m_socket.socket.return_value
diff --git a/Lib/test/test_generators.py b/Lib/test/test_generators.py
index 3bf5f3b743..23368c8d8b 100644
--- a/Lib/test/test_generators.py
+++ b/Lib/test/test_generators.py
@@ -33,6 +33,7 @@ def generator2(self):
else:
return "FAILED"
+ @unittest.skipIf(True, 'Keyboard interrupts do not work in the Guix build environment')
def test_raise_and_yield_from(self):
gen = self.generator1()
gen.send(None)
diff --git a/Lib/test/test_pathlib.py b/Lib/test/test_pathlib.py
index bf3fc5fb24..21015403f3 100644
--- a/Lib/test/test_pathlib.py
+++ b/Lib/test/test_pathlib.py
@@ -2546,6 +2546,7 @@ def test_rglob(self):
'pwd module does not expose getpwall()')
@unittest.skipIf(sys.platform == "vxworks",
"no home directory on VxWorks")
+ @unittest.skipIf(True, "Guix builder home is '/' which causes trouble for these tests")
def test_expanduser(self):
P = self.cls
import_helper.import_module('pwd')
diff --git a/Lib/test/test_pdb.py b/Lib/test/test_pdb.py
index 6ac1a4a3c3..4f58cf9b40 100644
--- a/Lib/test/test_pdb.py
+++ b/Lib/test/test_pdb.py
@@ -1315,11 +1315,11 @@ def test_pdb_issue_20766():
> <doctest test.test_pdb.test_pdb_issue_20766[0]>(6)test_function()
-> print('pdb %d: %s' % (i, sess._previous_sigint_handler))
(Pdb) continue
- pdb 1: <built-in function default_int_handler>
+ pdb 1: Handlers.SIG_IGN
> <doctest test.test_pdb.test_pdb_issue_20766[0]>(6)test_function()
-> print('pdb %d: %s' % (i, sess._previous_sigint_handler))
(Pdb) continue
- pdb 2: <built-in function default_int_handler>
+ pdb 2: Handlers.SIG_IGN
"""
def test_pdb_issue_43318():
diff --git a/Lib/test/test_regrtest.py b/Lib/test/test_regrtest.py
index 62e6c28280..7ffee56635 100644
--- a/Lib/test/test_regrtest.py
+++ b/Lib/test/test_regrtest.py
@@ -810,6 +810,7 @@ def test_fromfile(self):
output = self.run_tests('--fromfile', filename)
self.check_executed_tests(output, tests)
+ @unittest.skipIf(True, 'Keyboard interrupts do not work in the Guix build environment.')
def test_interrupted(self):
code = TEST_INTERRUPTED
test = self.create_test('sigint', code=code)
@@ -827,6 +828,7 @@ def test_slowest(self):
% (self.TESTNAME_REGEX, len(tests)))
self.check_line(output, regex)
+ @unittest.skipIf(True, 'Keyboard interrupts do not work in the Guix build environment.')
def test_slowest_interrupted(self):
# Issue #25373: test --slowest with an interrupted test
code = TEST_INTERRUPTED
diff --git a/Lib/test/test_resource.py b/Lib/test/test_resource.py
index f2642c6ba1..4358a20dae 100644
--- a/Lib/test/test_resource.py
+++ b/Lib/test/test_resource.py
@@ -150,6 +150,7 @@ def test_freebsd_contants(self):
@unittest.skipUnless(hasattr(resource, 'prlimit'), 'no prlimit')
@support.requires_linux_version(2, 6, 36)
+ @unittest.skipIf(True, "Bug: the PermissionError is not raised")
def test_prlimit(self):
self.assertRaises(TypeError, resource.prlimit)
self.assertRaises(ProcessLookupError, resource.prlimit,
diff --git a/Lib/test/test_shutil.py b/Lib/test/test_shutil.py
index 62e9180375..3eda176fa3 100644
--- a/Lib/test/test_shutil.py
+++ b/Lib/test/test_shutil.py
@@ -1497,6 +1497,7 @@ def test_make_archive(self):
base_name = os.path.join(tmpdir, 'archive')
self.assertRaises(ValueError, make_archive, base_name, 'xxx')
+ @unittest.skipIf(True, "The Guix build container has no root user")
@support.requires_zlib()
def test_make_archive_owner_group(self):
# testing make_archive with owner and group, with various combinations
@@ -1525,6 +1526,7 @@ def test_make_archive_owner_group(self):
self.assertTrue(os.path.isfile(res))
+ @unittest.skipIf(True, "The Guix build container has no root user")
@support.requires_zlib()
@unittest.skipUnless(UID_GID_SUPPORT, "Requires grp and pwd support")
def test_tarfile_root_owner(self):
diff --git a/Lib/test/test_signal.py b/Lib/test/test_signal.py
index c2b5861fc3..3c7a9c42cb 100644
--- a/Lib/test/test_signal.py
+++ b/Lib/test/test_signal.py
@@ -89,6 +89,7 @@ def test_valid_signals(self):
self.assertLess(len(s), signal.NSIG)
@unittest.skipUnless(sys.executable, "sys.executable required.")
+ @unittest.skipUnless(sys.stdin.isatty(), "KeyboardInterrupts require a TTY device")
def test_keyboard_interrupt_exit_code(self):
"""KeyboardInterrupt triggers exit via SIGINT."""
process = subprocess.run(
@@ -139,6 +140,7 @@ def test_issue9324(self):
signal.signal(7, handler)
@unittest.skipUnless(sys.executable, "sys.executable required.")
+ @unittest.skipUnless(sys.stdin.isatty(), "KeyboardInterrupts require a TTY device")
def test_keyboard_interrupt_exit_code(self):
"""KeyboardInterrupt triggers an exit using STATUS_CONTROL_C_EXIT."""
# We don't test via os.kill(os.getpid(), signal.CTRL_C_EVENT) here
@@ -1322,6 +1324,7 @@ def cycle_handlers():
class RaiseSignalTest(unittest.TestCase):
+ @unittest.skipUnless(sys.stdin.isatty(), "KeyboardInterrupts require a TTY device")
def test_sigint(self):
with self.assertRaises(KeyboardInterrupt):
signal.raise_signal(signal.SIGINT)
@@ -1352,6 +1355,7 @@ def handler(a, b):
class PidfdSignalTest(unittest.TestCase):
+ @unittest.skipUnless(sys.stdin.isatty(), "KeyboardInterrupts require a TTY device")
@unittest.skipUnless(
hasattr(signal, "pidfd_send_signal"),
"pidfd support not built in",
diff --git a/Lib/test/test_socket.py b/Lib/test/test_socket.py
index 9c5f6d3dc9..ef74fc5694 100644
--- a/Lib/test/test_socket.py
+++ b/Lib/test/test_socket.py
@@ -1006,6 +1006,8 @@ def testHostnameRes(self):
if not fqhn in all_host_names:
self.fail("Error testing host resolution mechanisms. (fqdn: %s, all: %s)" % (fqhn, repr(all_host_names)))
+ @unittest.skipUnless(support.is_resource_enabled('network'),
+ 'network is not enabled')
def test_host_resolution(self):
for addr in [socket_helper.HOSTv4, '10.0.0.1', '255.255.255.255']:
self.assertEqual(socket.gethostbyname(addr), addr)
@@ -1136,6 +1138,8 @@ def testNtoHErrors(self):
self.assertRaises(OverflowError, socket.ntohl, k)
self.assertRaises(OverflowError, socket.htonl, k)
+ @unittest.skipUnless(os.path.exists("/etc/services"),
+ "getservbyname uses /etc/services, which is not in the chroot")
def testGetServBy(self):
eq = self.assertEqual
# Find one service that exists, then check all the related interfaces.
@@ -1485,6 +1489,8 @@ def test_sio_loopback_fast_path(self):
raise
self.assertRaises(TypeError, s.ioctl, socket.SIO_LOOPBACK_FAST_PATH, None)
+ @unittest.skipUnless(os.path.exists("/etc/gai.conf"),
+ "getaddrinfo() will fail")
def testGetaddrinfo(self):
try:
socket.getaddrinfo('localhost', 80)
@@ -1567,6 +1573,8 @@ def test_getnameinfo(self):
# only IP addresses are allowed
self.assertRaises(OSError, socket.getnameinfo, ('mail.python.org',0), 0)
+ @unittest.skipUnless(os.path.exists("/etc/gai.conf"),
+ "getaddrinfo() will fail")
@unittest.skipUnless(support.is_resource_enabled('network'),
'network is not enabled')
def test_idna(self):
diff --git a/Lib/test/test_spwd.py b/Lib/test/test_spwd.py
index a143acc659..f7207887c0 100644
--- a/Lib/test/test_spwd.py
+++ b/Lib/test/test_spwd.py
@@ -6,8 +6,7 @@
spwd = import_helper.import_module('spwd')
-@unittest.skipUnless(hasattr(os, 'geteuid') and os.geteuid() == 0,
- 'root privileges required')
+@unittest.skipUnless(os.path.exists("/etc/shadow"), 'spwd tests require /etc/shadow')
class TestSpwdRoot(unittest.TestCase):
def test_getspall(self):
@@ -57,8 +56,7 @@ def test_getspnam(self):
self.assertRaises(TypeError, spwd.getspnam, bytes_name)
-@unittest.skipUnless(hasattr(os, 'geteuid') and os.geteuid() != 0,
- 'non-root user required')
+@unittest.skipUnless(os.path.exists("/etc/shadow"), 'spwd tests require /etc/shadow')
class TestSpwdNonRoot(unittest.TestCase):
def test_getspnam_exception(self):
diff --git a/Lib/test/test_tarfile.py b/Lib/test/test_tarfile.py
index c658cca7a7..b7188e411e 100644
--- a/Lib/test/test_tarfile.py
+++ b/Lib/test/test_tarfile.py
@@ -2737,9 +2737,12 @@ def root_is_uid_gid_0():
import pwd, grp
except ImportError:
return False
- if pwd.getpwuid(0)[0] != 'root':
- return False
- if grp.getgrgid(0)[0] != 'root':
+ try:
+ if pwd.getpwuid(0)[0] != 'root':
+ return False
+ if grp.getgrgid(0)[0] != 'root':
+ return False
+ except KeyError:
return False
return True
diff --git a/Lib/test/test_threading.py b/Lib/test/test_threading.py
index c54806e594..d9bbca4e6a 100644
--- a/Lib/test/test_threading.py
+++ b/Lib/test/test_threading.py
@@ -1620,6 +1620,7 @@ def check_interrupt_main_noerror(self, signum):
# Restore original handler
signal.signal(signum, handler)
+ @unittest.skipIf(True, 'Keyboard interrupts do not work in the Guix build container.')
def test_interrupt_main_subthread(self):
# Calling start_new_thread with a function that executes interrupt_main
# should raise KeyboardInterrupt upon completion.
@@ -1631,6 +1632,8 @@ def call_interrupt():
t.join()
t.join()
+
+ @unittest.skipIf(True, 'Keyboard interrupts do not work in the Guix build container.')
def test_interrupt_main_mainthread(self):
# Make sure that if interrupt_main is called in main thread that
# KeyboardInterrupt is raised instantly.
diff --git a/Lib/test/test_unicodedata.py b/Lib/test/test_unicodedata.py
index 213b3cf252..a5edd4a119 100644
--- a/Lib/test/test_unicodedata.py
+++ b/Lib/test/test_unicodedata.py
@@ -315,6 +315,7 @@ def test_linebreak_7643(self):
self.assertEqual(len(lines), 1,
r"\u%.4x should not be a linebreak" % i)
+@requires_resource('network')
class NormalizationTest(unittest.TestCase):
@staticmethod
def check_version(testfile):
diff --git a/Tools/scripts/run_tests.py b/Tools/scripts/run_tests.py
index 48feb3f778..e82cafc88a 100644
--- a/Tools/scripts/run_tests.py
+++ b/Tools/scripts/run_tests.py
@@ -40,7 +40,7 @@ def main(regrtest_args):
if not any(is_multiprocess_flag(arg) for arg in regrtest_args):
args.extend(['-j', '0']) # Use all CPU cores
if not any(is_resource_use_flag(arg) for arg in regrtest_args):
- args.extend(['-u', 'all,-largefile,-audio,-gui'])
+ args.extend(['-u', 'all,-largefile,-audio,-gui,-network'])
args.extend(regrtest_args)
print(' '.join(args))
if sys.platform == 'win32':
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