guix/gnu/packages
Ricardo Wurmus ddef43a29d
gnu: r-gwascat: Update to 2.20.1.
* gnu/packages/bioinformatics.scm (r-gwascat): Update to 2.20.1.
[propagated-inputs]: Remove r-homo-sapiens; add r-ggplot2.
[native-inputs]: Add r-knitr.
2020-06-13 01:19:46 +02:00
..
aux-files
patches gnu: guile-sqlite3: Update to 0.1.1. 2020-06-12 18:56:11 +02:00
abduco.scm
abiword.scm
accessibility.scm
acct.scm
acl.scm
ada.scm
admin.scm gnu: progress: Update to 0.15. 2020-06-10 20:36:37 +02:00
adns.scm gnu: adns: Update to 1.6.0. 2020-06-11 23:13:40 +03:00
agda.scm
aidc.scm
algebra.scm gnu: singular: Update to 4.1.3p2. 2020-06-09 22:30:09 +02:00
android.scm
animation.scm
anthy.scm
antivirus.scm
apl.scm
apr.scm
arcan.scm
aspell.scm
assembly.scm gnu: xa: Update to 2.3.11. 2020-06-02 00:28:53 +02:00
astronomy.scm
attr.scm
audio.scm gnu: bs1770gain: Deduplicate home page URLs. 2020-06-03 02:21:23 +02:00
augeas.scm
authentication.scm
autogen.scm
autotools.scm
avahi.scm
avr.scm
axoloti.scm
backup.scm gnu: borg: Update to 1.1.13. 2020-06-09 22:30:08 +02:00
base.scm
bash.scm
batik.scm
bdw-gc.scm
benchmark.scm gnu: fio: Update to 3.20. 2020-05-30 16:54:50 +02:00
bioconductor.scm
bioinformatics.scm gnu: r-gwascat: Update to 2.20.1. 2020-06-13 01:19:46 +02:00
bison.scm
bittorrent.scm gnu: Transmission: Fix CVE-2018-10756. 2020-05-28 11:11:05 -04:00
boost.scm gnu: boost-signals2: Update hash. 2020-06-05 21:31:19 +02:00
bootloaders.scm gnu: os-prober: Fix cross-compilation. 2020-06-02 20:50:17 +02:00
bootstrap.scm gnu: bootstrap: Add powerpc64-linux dynamic linker. 2020-06-01 11:37:24 -07:00
build-tools.scm gnu: Add compiledb. 2020-05-28 20:31:20 -04:00
busybox.scm
c.scm gnu: Add liblogging. 2020-06-12 18:56:11 +02:00
calcurse.scm
calendar.scm
ccache.scm gnu: ccache: Update to 3.7.9. 2020-05-30 16:54:50 +02:00
cdrom.scm gnu: asunder: Update to 2.9.6. 2020-06-02 18:06:03 +02:00
cedille.scm
certs.scm
check.scm gnu: python-pylint: Update to 2.5.3. 2020-06-09 23:52:19 +02:00
chemistry.scm
chez.scm
chicken.scm
chromium.scm
ci.scm gnu: cuirass: Update to 0.0.1-2280ae18. 2020-06-10 17:32:12 +02:00
cinnamon.scm
clojure.scm
cluster.scm
cmake.scm
cobol.scm
code.scm gnu: global: Don't build static libraries. 2020-06-03 12:46:04 +03:00
commencement.scm
compression.scm gnu: clzip: Fix cross-compilation. 2020-06-02 20:50:18 +02:00
compton.scm
conky.scm
connman.scm
cook.scm
coq.scm
cpio.scm
cpp.scm gnu: abseil-cpp: Update to 20200225.2. 2020-05-30 16:54:51 +02:00
cppi.scm
cran.scm gnu: Add r-dot. 2020-06-13 01:19:39 +02:00
crates-io.scm gnu: rust-yaml-rust: Update to 0.4.4. 2020-06-09 23:52:19 +02:00
cross-base.scm
crypto.scm gnu: minisign: Update to 0.9. 2020-06-09 23:52:19 +02:00
cryptsetup.scm
cups.scm gnu: hplip: Update to 3.20.5. 2020-06-02 00:28:53 +02:00
curl.scm
cvassistant.scm
cybersecurity.scm gnu: ropgadget: Update to 6.3. 2020-06-02 00:28:52 +02:00
cyrus-sasl.scm
databases.scm gnu: rocksdb: Update to 6.10.1. 2020-06-09 23:52:19 +02:00
datamash.scm
datastructures.scm
dav.scm
dbm.scm
dc.scm
debian.scm
debug.scm gnu: Add mspdebug. 2020-05-30 23:19:51 +02:00
dejagnu.scm
dhall.scm gnu: dhall: Update to 1.32.0. 2020-06-09 23:52:20 +02:00
dico.scm
dictionaries.scm gnu: grammalecte: Update to 1.10.0. 2020-06-10 17:04:25 +02:00
diffoscope.scm gnu: diffoscope: Update to 146. 2020-06-05 19:33:10 +02:00
digest.scm
direct-connect.scm
disk.scm
display-managers.scm
distributed.scm
django.scm
djvu.scm gnu: djview: Update to 4.11. 2020-06-10 04:37:22 +02:00
dlang.scm
dns.scm gnu: knot: Update to 2.9.5. 2020-05-27 19:11:05 +02:00
docbook.scm
docker.scm gnu: docker, docker-cli: Update to 19.03.11. 2020-06-07 18:43:38 +02:00
documentation.scm gnu: asciidoc: Use HTTPS home page URI. 2020-06-10 17:19:02 +02:00
drones.scm
dunst.scm
dvtm.scm gnu: dvtm: Use HTTPS home page URI. 2020-05-27 01:49:41 +02:00
easyrpg.scm
ebook.scm
ed.scm
education.scm gnu: Add exercism and dependencies. 2020-06-11 22:44:27 +02:00
efi.scm
electronics.scm
elf.scm gnu: libabigail: Update to 1.7. 2020-06-02 23:41:36 +02:00
elixir.scm
elm.scm
emacs-xyz.scm gnu: Add emacs-shell-pop. 2020-06-12 18:56:10 +02:00
emacs.scm
embedded.scm
emulators.scm gnu: sameboy: Update to 0.13.2. 2020-06-11 14:08:07 +02:00
enchant.scm
engineering.scm gnu: openscad: Add patch to fix build. 2020-06-06 15:20:02 +02:00
enlightenment.scm gnu: Add epour. 2020-06-07 22:27:40 +03:00
entr.scm
erlang.scm
fabric-management.scm
fcitx.scm
figlet.scm
file-systems.scm gnu: fsarchiver: Use HTTPS home page URI. 2020-06-10 17:25:17 +02:00
file.scm
finance.scm gnu: homebank: Update to 5.4.2. 2020-05-31 23:24:39 +02:00
firmware.scm
flashing-tools.scm
flex.scm
fltk.scm
fonts.scm gnu: font-liberation: Update to 2.1.1. 2020-06-08 19:01:41 +02:00
fontutils.scm
forth.scm
fpga.scm
freedesktop.scm gnu: libqmi: Update to 1.24.14. 2020-06-06 22:15:08 +02:00
freeipmi.scm
fribidi.scm
ftp.scm
fvwm.scm
game-development.scm gnu: grfcodec: Fix source URL. 2020-06-10 17:33:58 +02:00
games.scm gnu: fortune-mod: Update to 2.28.0. 2020-06-06 09:21:48 +02:00
gawk.scm
gcal.scm
gcc.scm
gd.scm
gdb.scm gnu: gdb: Add version 9.2. 2020-05-28 01:02:35 +02:00
genealogy.scm
genimage.scm
geo.scm
gettext.scm
ghostscript.scm
gimp.scm gnu: babl: Update to 0.1.76. 2020-05-29 06:46:21 +02:00
gkrellm.scm
gl.scm
glib.scm gnu: dbus: Fix CVE-2020-12049. 2020-06-02 23:41:35 +02:00
gnome-xyz.scm gnu: Add vala-language-server. 2020-06-07 18:17:34 +03:00
gnome.scm gnu: mm-common: Update to 1.0.1. 2020-06-10 04:37:23 +02:00
gnu-doc.scm
gnu-pw-mgr.scm
gnucash.scm
gnunet.scm
gnupg.scm
gnustep.scm
gnuzilla.scm gnu: icecat: Fix WebGL support. 2020-06-12 01:29:54 +02:00
gobby.scm
golang.scm gnu: Add exercism and dependencies. 2020-06-11 22:44:27 +02:00
gperf.scm
gpodder.scm
gps.scm gnu: gpxsee: Update to 7.30. 2020-06-06 09:21:48 +02:00
graph.scm gnu: r-rgraphviz: Update to 2.32.0. 2020-06-13 01:19:39 +02:00
graphics.scm gnu: Blender: Update to 2.83.0. 2020-06-08 14:32:50 -04:00
graphviz.scm
groff.scm
groovy.scm
gsasl.scm
gstreamer.scm
gtk.scm gnu: gtkspell3: Update to 3.0.10. 2020-06-10 04:37:23 +02:00
guile-wm.scm
guile-xyz.scm gnu: emacsy-minimal: Inputs now use guile version 2.2. 2020-05-30 16:41:41 +02:00
guile.scm gnu: guile-sqlite3: Update to 0.1.1. 2020-06-12 18:56:11 +02:00
gv.scm
gxmessage.scm
hardware.scm gnu: memtester: Fix cross-compilation. 2020-06-02 20:50:19 +02:00
haskell-apps.scm
haskell-check.scm gnu: Add ghc-inspection-testing. 2020-05-29 10:44:29 -04:00
haskell-crypto.scm
haskell-web.scm
haskell-xyz.scm gnu: Add ghc-atomic-write-0.2.0.7. 2020-05-29 10:44:34 -04:00
haskell.scm
heads.scm
hexedit.scm
hugs.scm
hurd.scm gnu: services: Add %hurd-startup-service. 2020-06-08 14:26:14 +02:00
hyperledger.scm
i2p.scm
ibus.scm
icu4c.scm
idris.scm
idutils.scm
image-processing.scm
image-viewers.scm
image.scm gnu: libavif: Mark up description. 2020-06-06 09:21:50 +02:00
imagemagick.scm
inklingreader.scm
inkscape.scm gnu: inkscape: Add inkscape-1.0. 2020-05-31 22:12:13 -04:00
installers.scm
ipfs.scm
irc.scm
iso-codes.scm
jami.scm
java-compression.scm
java-graphics.scm
java-maths.scm
java.scm gnu: Fix apache mirror URIs. 2020-06-12 18:23:27 +03:00
javascript.scm
jemalloc.scm
jose.scm
jrnl.scm
julia-xyz.scm
julia.scm
jupyter.scm
kawa.scm
kde-frameworks.scm gnu: KContacts: Propagate required inputs. 2020-06-06 21:14:17 +02:00
kde-internet.scm
kde-multimedia.scm
kde-pim.scm gnu: Add kpeoplevcard. 2020-06-06 21:14:17 +02:00
kde-plasma.scm
kde-systemtools.scm
kde-utils.scm gnu: smb4k: Update to 3.0.6. 2020-06-10 04:37:23 +02:00
kde.scm gnu: kdevelop: Update to 5.5.2. 2020-06-06 21:14:17 +02:00
kerberos.scm
key-mon.scm
kodi.scm
language.scm
ld-wrapper.in
lean.scm
lego.scm
less.scm
lesstif.scm
libbsd.scm
libcanberra.scm
libdaemon.scm
libedit.scm
libevent.scm
libffcall.scm
libffi.scm gnu: ruby-libffi: Enable tests and unbundle LibFFI. 2020-05-29 15:41:29 +02:00
libftdi.scm
libidn.scm
libphidget.scm
libreoffice.scm gnu: libnumbertext: Update to 1.0.6. 2020-06-10 04:37:24 +02:00
libsigsegv.scm
libunistring.scm
libunwind.scm
libusb.scm
license.scm
lighting.scm
linphone.scm
linux.scm gnu: linux-libre: Update to 5.4.46. 2020-06-11 16:19:38 -04:00
lirc.scm
lisp-xyz.scm gnu: Add sbcl-clx-xembed. 2020-06-09 22:07:52 +03:00
lisp.scm gnu: txr: Update to 239. 2020-06-05 14:08:20 +02:00
llvm.scm gnu: clang: Build 'clang-tools-extra'. 2020-05-28 12:49:56 +02:00
logging.scm
logo.scm
lolcode.scm
lout.scm
lsof.scm
lua.scm
lxde.scm gnu: lxrandr: Don't use NAME in source URI. 2020-05-26 00:19:40 +02:00
lxqt.scm
m4.scm
machine-learning.scm gnu: dlib: Update to 19.20. 2020-06-10 04:37:24 +02:00
magic-wormhole.scm
mail.scm gnu: mu: Update to 1.4.10. 2020-06-10 05:15:52 +02:00
make-bootstrap.scm gnu: guile-static: Disable JIT on ARMv7. 2020-06-06 23:28:49 +02:00
man.scm gnu: man-pages: Update to 5.07. 2020-06-10 20:33:33 +02:00
markup.scm gnu: cmark: Use HTTPS home page URI. 2020-05-25 19:26:32 +02:00
marst.scm
mastodon.scm
mate.scm
maths.scm gnu: ipopt: Fix source URI. 2020-06-10 17:34:41 +02:00
matrix.scm gnu: synapse: Update to 1.14.0. 2020-06-05 19:33:09 +02:00
maven.scm gnu: Fix apache mirror URIs. 2020-06-12 18:23:27 +03:00
mc.scm gnu: mc: Update to 4.8.24. 2020-05-26 00:19:39 +02:00
mcrypt.scm
medical.scm
mes.scm
messaging.scm gnu: znc: Update to 1.8.1. 2020-06-08 23:03:08 +02:00
microcom.scm
mingw.scm
moe.scm
monitoring.scm gnu: nagios: Update to 4.4.6. 2020-05-27 03:28:10 +02:00
mono.scm
moreutils.scm
motti.scm
mp3.scm gnu: mpg123: Update to 1.26.1. 2020-06-03 20:45:20 +02:00
mpd.scm
mpi.scm
mtools.scm
multiprecision.scm gnu: mpfi: Update home page. 2020-05-30 15:56:40 +02:00
music.scm gnu: pd: Update to 0.51-0. 2020-06-10 04:37:24 +02:00
musl.scm
nano.scm
ncdu.scm gnu: ncdu: Update to 1.15. 2020-06-03 20:45:20 +02:00
ncurses.scm
netpbm.scm
nettle.scm
networking.scm gnu: ethtool: Update to 5.7. 2020-06-10 05:09:29 +02:00
nfs.scm gnu: nfs-utils: Update to 2.4.3. 2020-05-26 00:19:39 +02:00
nickle.scm
nim.scm
ninja.scm
node-xyz.scm
node.scm gnu: node: Build shared library. 2020-06-13 01:19:39 +02:00
noweb.scm
nss.scm gnu: nss: Fix CVE-2020-12399 via graft. 2020-06-02 14:05:46 -04:00
ntp.scm
nutrition.scm
nvi.scm
ocaml.scm gnu: ocaml-extlib: Update to 1.7.7. 2020-06-03 20:45:20 +02:00
ocr.scm
onc-rpc.scm
openbox.scm
opencl.scm
opencog.scm
openkinect.scm
openldap.scm
openstack.scm
orpheus.scm
ots.scm
package-management.scm gnu: guix: Update to 141b5c1620. 2020-06-09 17:42:23 +02:00
pantheon.scm
parallel.scm gnu: slurm-drmaa: Update to 1.1.1. 2020-06-02 09:47:51 +02:00
password-utils.scm gnu: qtpass: Wrap binary. 2020-06-10 16:21:18 +03:00
patchutils.scm gnu: colordiff: Update to 1.0.19. 2020-05-25 19:31:34 +02:00
pciutils.scm
pcre.scm
pdf.scm gnu: mupdf: Don't use NAME in source URI. 2020-05-26 03:07:53 +02:00
pem.scm
pep.scm gnu: Add java-pep-adapter. 2020-06-09 20:01:09 +02:00
perl-check.scm
perl-compression.scm
perl-web.scm
perl.scm gnu: perl-getopt-long: Do not use "v" prefix in version string. 2020-05-26 00:56:19 +02:00
perl6.scm
phabricator.scm
photo.scm gnu: libexif: Update to 0.6.22 [security fixes]. 2020-05-25 00:17:18 +02:00
php.scm gnu: php: Update to 7.4.7. 2020-06-11 15:45:05 +02:00
pkg-config.scm
plotutils.scm gnu: plotutils: Build libplotter. 2020-05-31 22:12:12 -04:00
poedit.scm
polkit.scm
popt.scm gnu: popt: Remove defunct mirror. 2020-05-29 23:11:37 +02:00
pretty-print.scm gnu: fmt: Update to 6.2.1. 2020-06-03 06:51:45 +02:00
printers.scm
profiling.scm
prolog.scm
protobuf.scm
pth.scm
pulseaudio.scm
pumpio.scm
pure.scm
purescript.scm
pv.scm
python-check.scm gnu: Add python-pytest-pycodestyle. 2020-05-26 00:56:19 +02:00
python-compression.scm
python-crypto.scm gnu: python-axolotl: Update to 0.2.3. 2020-06-02 07:37:10 +05:30
python-science.scm
python-web.scm gnu: python-cssselect: Update to 1.1.0. 2020-06-08 19:01:40 +02:00
python-xyz.scm gnu: Add python-mechanize. 2020-06-08 19:01:41 +02:00
python.scm gnu: Add pypy3. 2020-06-01 00:51:39 +02:00
qt.scm gnu: qwt: Update to 6.1.5. 2020-06-07 18:43:38 +02:00
radio.scm gnu: aptdec: Do not hard-code CC=gcc. 2020-05-30 00:01:57 +05:30
ragel.scm
rails.scm
ratpoison.scm
rcm.scm
rdesktop.scm
rdf.scm
re2c.scm
readline.scm
rednotebook.scm
regex.scm gnu: re2: Update to 2020-06-01. 2020-06-03 06:46:31 +02:00
robotics.scm
rpc.scm gnu: Add apache-thrift. 2020-06-09 10:43:54 +02:00
rrdtool.scm
rsync.scm
ruby.scm gnu: ruby-sanitize: Update to 5.1.0. 2020-05-29 15:41:30 +02:00
rush.scm
rust-apps.scm
rust.scm
sagemath.scm
samba.scm gnu: iniparser: Edit synopsis & description. 2020-06-02 20:50:18 +02:00
sawfish.scm
scanner.scm
scheme.scm
screen.scm gnu: byobu: Update to 5.133. 2020-06-02 18:06:04 +02:00
scribus.scm
scsi.scm
sdcc.scm
sdl.scm
search.scm
security-token.scm gnu: eid-mw: Update to 4.4.27. 2020-05-28 02:34:38 +02:00
selinux.scm
sequoia.scm
serialization.scm gnu: apache-arrow: Update to 0.17.1. 2020-06-09 10:43:54 +02:00
serveez.scm
shells.scm gnu: linenoise: Fix cross-compilation. 2020-06-02 20:50:18 +02:00
shellutils.scm
simh.scm
simulation.scm
skarnet.scm gnu: s6-portable-utils: Update to 2.2.2.3. 2020-06-07 18:43:38 +02:00
skribilo.scm
slang.scm
smalltalk.scm
sml.scm
speech.scm
sphinx.scm
spice.scm
sqlite.scm
squirrel.scm
ssh.scm gnu: openssh: Remove exception to build without xauth for the Hurd. 2020-06-08 16:50:40 +02:00
sssd.scm
stalonetray.scm
statistics.scm gnu: r-preprocesscore: Update to 1.50.0. 2020-06-13 01:19:39 +02:00
stb.scm
storage.scm
suckless.scm gnu: Use 'cc-for-target' instead of custom implementations. 2020-05-29 15:41:30 +02:00
swig.scm
sync.scm gnu: rclone: Update to 1.52.0. 2020-06-02 00:07:12 +02:00
syncthing.scm Revert some Go package updates. 2020-05-27 15:03:03 -04:00
syndication.scm gnu: Add liferea. 2020-05-30 16:41:40 +02:00
synergy.scm
task-management.scm gnu: taskwarrior: Use HTTPS home page URI. 2020-05-25 20:21:15 +02:00
tbb.scm
tcl.scm
telephony.scm
terminals.scm gnu: tilda: Update to 1.5.2. 2020-06-02 18:06:04 +02:00
terraform.scm
tex.scm gnu: lyx: Use qt-build-system. 2020-06-11 09:56:30 +03:00
texinfo.scm
text-editors.scm gnu: scintilla: Update to 4.4.3. 2020-06-10 21:57:40 +02:00
textutils.scm gnu: Add drm-tools. 2020-05-31 22:12:12 -04:00
time.scm
tls.scm gnu: GnuTLS: Update replacement to 3.6.14 [fixes CVE-2020-13777]. 2020-06-06 15:35:41 +02:00
tmux.scm gnu: tmux-xpanes: Update to 4.1.2. 2020-06-02 18:06:03 +02:00
tor.scm
toys.scm
tryton.scm
tv.scm
uml.scm
unicode.scm
unrtf.scm
upnp.scm
usb-modeswitch.scm
uucp.scm
valgrind.scm
version-control.scm gnu: subversion: Update to 1.14.0. 2020-06-11 22:41:02 +03:00
video.scm gnu: x265: Disable assembly optimizations on i686-linux. 2020-06-09 20:43:36 +02:00
vim.scm gnu: Add vim-dispatch. 2020-06-07 22:27:36 +03:00
virtualization.scm gnu: osinfo-db: Update to 20200529. 2020-06-03 03:20:27 +02:00
visidata.scm
vnc.scm
vpn.scm gnu: wireguard-linux-compat: Update to 1.0.20200520. 2020-06-07 18:43:37 +02:00
vulkan.scm
w3m.scm
wdiff.scm
web-browsers.scm gnu: qutebrowser: Update to 1.12.0. 2020-06-03 02:21:24 +02:00
web.scm gnu: Fix apache mirror URIs. 2020-06-12 18:23:27 +03:00
webkit.scm gnu: wpebackend-fdo: Update to 1.6.1. 2020-06-02 18:06:03 +02:00
wget.scm
wicd.scm
wine.scm
wireservice.scm
wm.scm gnu: herbstluftwm: Update to 0.8.3. 2020-06-10 05:09:29 +02:00
wordnet.scm
wv.scm
wxwidgets.scm
xdisorg.scm gnu: autorandr: Fix typo. 2020-06-04 19:00:22 +02:00
xfce.scm gnu: thunar: Update to 1.8.15. 2020-06-09 22:30:09 +02:00
xfig.scm
xiph.scm
xml.scm gnu: xerces-c: Update to 3.2.3. 2020-05-27 03:28:10 +02:00
xnee.scm
xorg.scm gnu: xf86-input-libinput: Reduce closure size. 2020-06-12 09:00:45 +02:00
zile.scm
zwave.scm