mirror of
https://git.in.rschanz.org/ryan77627/guix.git
synced 2024-12-30 08:02:38 -05:00
1885bb0c08
* gnu/packages/patches/python-dendropy-fix-tests.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/bioinformatics.scm (python-dendropy)[source]: Add patch.
41 lines
1.5 KiB
Diff
41 lines
1.5 KiB
Diff
This patch fixes two test failures. It was downloaded from:
|
|
https://github.com/jeetsukumaran/DendroPy/commit/93f984bba7a6c588a28ca87f4e557ce283809453
|
|
|
|
From 93f984bba7a6c588a28ca87f4e557ce283809453 Mon Sep 17 00:00:00 2001
|
|
From: jeetsukumaran <jeetsukumaran@gmail.com>
|
|
Date: Tue, 21 Feb 2017 16:41:01 -0500
|
|
Subject: [PATCH] Update to Python 3 container and iteration semantics
|
|
|
|
---
|
|
dendropy/dataio/newickreader.py | 3 ++-
|
|
dendropy/datamodel/treemodel.py | 3 +++
|
|
2 files changed, 5 insertions(+), 1 deletion(-)
|
|
|
|
diff --git a/dendropy/dataio/newickreader.py b/dendropy/dataio/newickreader.py
|
|
index 6dcf3c5..f978729 100644
|
|
--- a/dendropy/dataio/newickreader.py
|
|
+++ b/dendropy/dataio/newickreader.py
|
|
@@ -303,7 +303,8 @@ def tree_iter(self,
|
|
taxon_symbol_map_fn=taxon_symbol_mapper.require_taxon_for_symbol)
|
|
yield tree
|
|
if tree is None:
|
|
- raise StopIteration
|
|
+ # raise StopIteration
|
|
+ return
|
|
|
|
def _read(self,
|
|
stream,
|
|
diff --git a/dendropy/datamodel/treemodel.py b/dendropy/datamodel/treemodel.py
|
|
index 0ecfe31..73146f0 100644
|
|
--- a/dendropy/datamodel/treemodel.py
|
|
+++ b/dendropy/datamodel/treemodel.py
|
|
@@ -772,6 +772,9 @@ def __hash__(self):
|
|
def __eq__(self, other):
|
|
return self is other
|
|
|
|
+ def __lt__(self, other):
|
|
+ return id(self) < id(other)
|
|
+
|
|
###########################################################################
|
|
### Basic Structure
|
|
|