guix/gnu/packages
Navid Afkhami f09944461f
gnu: Add python-cell2cell.
* gnu/packages/bioinformatics.scm (python-cell2cell): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2023-06-02 19:54:27 +02:00
..
aux-files gnu: Remove linux-libre 6.2. 2023-05-31 21:21:25 -04:00
patches gnu: python-ipython-documentation: Remove patches. 2023-06-02 16:08:39 +02:00
abduco.scm
abiword.scm
accessibility.scm gnu: Add mouseloupe. 2023-05-25 12:51:16 +02:00
acct.scm
acl.scm
ada.scm
admin.scm gnu: atop: Update to 2.9.0. 2023-06-01 12:13:08 +03:00
adns.scm
agda.scm
aidc.scm
algebra.scm gnu: cm: Update to 0.4.2. 2023-05-23 16:32:26 +02:00
android.scm
animation.scm
anthy.scm
antivirus.scm
apl.scm
apparmor.scm
apr.scm
arcan.scm
aspell.scm
assembly.scm
astronomy.scm gnu: python-asdf: Enable tests. 2023-05-25 21:20:06 -03:00
attr.scm
audio.scm gnu: ztoolkit-rsvg: Use librsvg-for-system. 2023-05-19 13:12:29 +02:00
augeas.scm
authentication.scm
autogen.scm
autotools.scm gnu: automake: Fix cross-build. 2023-05-11 09:03:44 +02:00
avahi.scm gnu: avahi: Support for cross-building and the Hurd. 2023-05-29 09:25:51 +02:00
avr-xyz.scm
avr.scm
axoloti.scm
backup.scm
barrier.scm gnu: barrier: Include NULL compatibility. 2023-05-11 16:38:28 +02:00
base.scm
bash.scm
batik.scm
bdw-gc.scm
benchmark.scm gnu: fio: Update to 3.35. 2023-06-01 12:15:01 +03:00
bioconductor.scm gnu: r-tcgabiolinks: Update to 2.28.2. 2023-06-02 12:53:15 +02:00
bioinformatics.scm gnu: Add python-cell2cell. 2023-06-02 19:54:27 +02:00
bison.scm
bittorrent.scm gnu: tremc: Fix compatibility with Transmission 4.0. 2023-05-22 15:36:50 -04:00
boost.scm
bootloaders.scm
bootstrap.scm gnu: Use dummy linker for '*-elf' systems. 2023-05-15 21:31:51 +08:00
bqn.scm
browser-extensions.scm
build-tools.scm gnu: bear: Update to 3.1.2. 2023-06-01 15:24:23 +03:00
busybox.scm gnu: busybox: Update to 1.36.1. 2023-05-30 18:04:18 +08:00
c.scm gnu: Add c-rrb. 2023-05-14 12:22:29 +02:00
calcurse.scm
calendar.scm
ccache.scm
cdrom.scm
cedille.scm
certs.scm gnu: nss-certs: Update to 3.88.1. 2023-05-07 13:04:25 -04:00
check.scm
chemistry.scm
chez.scm
chicken.scm
chromium.scm
ci.scm gnu: cuirass: Update to b825967. 2023-06-02 16:13:35 +02:00
cinnamon.scm
clojure.scm
cluster.scm
cmake.scm
cobol.scm
code.scm gnu: lcov: Patch reference to 'find' command. 2023-05-22 17:05:18 +02:00
commencement.scm gnu: gcc-boot0: Do not use 'coreutils-boot0' on GNU/Hurd. 2023-06-02 15:47:28 +02:00
compression.scm
compton.scm
configuration-management.scm
conky.scm
connman.scm
containers.scm
convmv.scm
cook.scm
coq.scm
cpio.scm
cpp.scm gnu: cpp-mustache: Update to 5.0 to fix build. 2023-06-02 16:05:25 +02:00
cppi.scm
cran.scm gnu: r-dismo: Replace bundled jars. 2023-06-02 11:34:17 +02:00
crates-graphics.scm gnu: Add rust-glutin-glx-sys-0.4. 2023-05-07 19:29:38 +03:00
crates-gtk.scm
crates-io.scm gnu: rust-trybuild-1: Update to 1.0.77. 2023-05-16 09:34:29 +03:00
cross-base.scm
crypto.scm gnu: encfs: Depend on OpenSSL v1.1 to fix test segfault. 2023-05-25 12:51:16 +02:00
cryptsetup.scm
cups.scm
curl.scm
cvassistant.scm
cybersecurity.scm gnu: Rename json-modern-cxx to nlohmann-json. 2023-05-14 12:22:29 +02:00
cyrus-sasl.scm
darwin.scm
databases.scm gnu: python-sqlite-utils: Update to 3.32.1. 2023-05-21 23:28:21 -05:00
datamash.scm
datastructures.scm gnu: zix: Update to 0.3.3-0.a13ae5a. 2023-05-19 13:12:29 +02:00
dav.scm
dbm.scm
dc.scm
debian.scm
debug.scm gnu: ddd: Update to 3.4.0 2023-05-24 20:43:08 +08:00
dejagnu.scm
dezyne.scm
dhall.scm
dico.scm
dictionaries.scm
diffoscope.scm gnu: diffoscope: Update to 242. 2023-05-13 18:38:28 +08:00
digest.scm
direct-connect.scm
disk.scm
display-managers.scm
distributed.scm
django.scm
djvu.scm
dlang.scm gnu: ldc: Update to 1.32.2. 2023-05-21 15:17:47 +03:00
dns.scm gnu: smartdns: Update to 42. 2023-05-30 17:59:15 +08:00
docbook.scm
docker.scm
documentation.scm gnu: python-docrepr: Fix tests. 2023-06-02 16:08:28 +02:00
dunst.scm
dvtm.scm
easyrpg.scm
ebook.scm
ed.scm
education.scm gnu: openboard: Update to 1.7-dev-0.47a96e1. 2023-05-25 22:19:38 +02:00
efi.scm
electronics.scm
elf.scm
elixir.scm
elm.scm
emacs-xyz.scm gnu: Add emacs-substitute. 2023-05-25 22:19:39 +02:00
emacs.scm gnu: emacs-next-tree-sitter: "Downgrade" to 29.0.91. 2023-05-28 23:14:18 +02:00
embedded.scm
emulators.scm
enchant.scm
engineering.scm gnu: kicad: Update to 7.0.5. 2023-06-02 13:13:23 +02:00
enlightenment.scm
entr.scm
erlang.scm
esolangs.scm
fabric-management.scm
fcitx.scm
fcitx5.scm
figlet.scm
file-systems.scm gnu: Add squashfuse. 2023-06-01 09:15:26 +02:00
file.scm
finance.scm gnu: bitcoin-core: Update to 25.0. 2023-05-30 13:42:27 +02:00
firmware.scm gnu: opensbi: Remove input labels. 2023-05-24 19:16:38 +03:00
flashing-tools.scm
flex.scm
fltk.scm
fonts.scm gnu: font-sarasa-gothic: Update to 0.40.7. 2023-05-30 17:56:35 +08:00
fontutils.scm
forth.scm
fpga.scm
freedesktop.scm gnu: xdg-desktop-portal-wlr: Update to 0.7.0. 2023-06-02 08:59:08 +04:00
freeipmi.scm
fribidi.scm
fsf.scm gnu: Add Free as in Freedom (2.0). 2023-05-12 20:22:02 +08:00
ftp.scm
fvwm.scm
game-development.scm gnu: python-renpy: Use G-Expressions. 2023-05-28 23:14:20 +02:00
games.scm gnu: warzone2100: Rewrite package arguments to G-expressions. 2023-05-30 17:46:43 +08:00
gawk.scm
gcal.scm
gcc.scm gnu: gcc: Change make-gccgo to use gexp's. 2023-05-14 13:43:06 +01:00
gd.scm
gdb.scm gnu: gdb/pinned: Move to gdb-12.1. 2023-05-07 19:29:42 +03:00
genealogy.scm
genimage.scm
geo.scm gnu: xygrib: Build with newer proj. 2023-05-24 10:14:02 +03:00
gettext.scm
ghostscript.scm
gimp.scm gnu: gimp: Build with librsvg-for-system. 2023-05-09 08:23:05 +03:00
gkrellm.scm
gl.scm gnu: mesa-opencl: Remove reference to patch. 2023-05-14 10:19:39 +02:00
glib.scm gnu: Add glibmm-next. 2023-05-28 13:12:50 +02:00
gnome-xyz.scm
gnome.scm gnu: zenity: Update to 3.44.1. 2023-06-01 12:44:58 +03:00
gnu-doc.scm
gnu-pw-mgr.scm
gnucash.scm
gnunet.scm gnu: libmicrohttpd: Update to 0.9.77. 2023-05-29 11:03:34 +03:00
gnupg.scm
gnustep.scm
gnuzilla.scm gnu: icedove: Update to 102.11.2. 2023-05-29 09:32:30 +02:00
gobby.scm
golang.scm gnu: gopls: Update to 0.12.0. 2023-06-01 23:00:44 -05:00
gperf.scm
gpodder.scm
gps.scm
graph.scm
graphics.scm gnu: f3d: Update to 2.0.0. 2023-05-18 19:55:33 +02:00
graphviz.scm gnu: graphviz: Add "minimal" variant. 2023-05-24 15:04:00 +02:00
groff.scm
groovy.scm
gsasl.scm
gstreamer.scm
gtk.scm
guile-wm.scm
guile-xyz.scm gnu: guile-squee: Update to 0-4.fab9d95. 2023-05-30 16:39:20 +01:00
guile.scm
gv.scm
gxmessage.scm
hardware.scm gnu: Rename json-modern-cxx to nlohmann-json. 2023-05-14 12:22:29 +02:00
haskell-apps.scm gnu: git-annex: Update to 10.20230407. 2023-05-11 21:33:05 +03:00
haskell-check.scm gnu: ghc-tasty: Add missing dependency on i686-linux. 2023-05-13 09:34:35 +02:00
haskell-crypto.scm
haskell-web.scm
haskell-xyz.scm
haskell.scm
haxe.scm
heads.scm
hexedit.scm
high-availability.scm
hugs.scm
hunspell.scm
hurd.scm
hyperledger.scm
i2p.scm
ibus.scm
icu4c.scm
idris.scm
idutils.scm
image-processing.scm gnu: paraview: Update to 5.11.1. 2023-05-28 23:14:19 +02:00
image-viewers.scm gnu: ytfzf: Update to 2.6.0. 2023-05-20 10:38:55 -05:00
image.scm gnu: slurp: Update to 1.4.0. 2023-05-17 18:24:48 +08:00
imagemagick.scm
inklingreader.scm
inkscape.scm
installers.scm
instrumentation.scm
ipfs.scm
irc.scm gnu: irssi: Update to 1.4.4. 2023-05-20 10:25:23 -05:00
irods.scm gnu: Rename json-modern-cxx to nlohmann-json. 2023-05-14 12:22:29 +02:00
iso-codes.scm
jami.scm
java-bootstrap.scm
java-compression.scm
java-graphics.scm
java-maths.scm
java-xml.scm
java.scm
javascript.scm
jemalloc.scm
jose.scm
julia-jll.scm
julia-xyz.scm
julia.scm
jupyter.scm gnu: Rename json-modern-cxx to nlohmann-json. 2023-05-14 12:22:29 +02:00
kawa.scm
kde-frameworks.scm
kde-games.scm
kde-internet.scm
kde-multimedia.scm
kde-pim.scm
kde-plasma.scm
kde-systemtools.scm
kde-utils.scm
kde.scm
kerberos.scm
kodi.scm gnu: kodi: Fix build against latest mesa. 2023-05-10 13:56:10 -05:00
language.scm gnu: Add skktools. 2023-05-30 00:15:30 +02:00
ld-wrapper.in
lean.scm
lego.scm
less.scm
lesstif.scm
libbsd.scm
libcanberra.scm
libdaemon.scm
libedit.scm
libevent.scm
libffcall.scm
libffi.scm
libftdi.scm
libidn.scm
libphidget.scm
libreoffice.scm
libsigsegv.scm
libunistring.scm gnu: libunistring: Fix make check for the Hurd. 2023-05-31 07:51:28 +02:00
libunwind.scm
libusb.scm
license.scm
lighting.scm
linphone.scm
linux.scm gnu: iotop: Update to 1.23. 2023-06-01 12:41:37 +03:00
lirc.scm
lisp-check.scm
lisp-xyz.scm gnu: cl-utm-ups: Update to 1.2-0.f1e6fd4. 2023-05-28 12:04:49 +02:00
lisp.scm gnu: txr: Update to 286. 2023-05-09 14:15:23 +02:00
llvm.scm
logging.scm gnu: kodi: Fix build with latest glibc. 2023-05-10 13:56:04 -05:00
logo.scm
loko.scm
lout.scm
lsof.scm
lua.scm
lxde.scm
lxqt.scm
m4.scm
machine-learning.scm gnu: Add python-tensorly. 2023-05-25 17:19:29 +02:00
magic-wormhole.scm
mail.scm gnu: isync: Add patch to improve openssl-3 compatibility. 2023-05-24 15:04:01 +02:00
make-bootstrap.scm
man.scm
markup.scm
marst.scm
mastodon.scm
mate.scm
maths.scm gnu: openblas: Update make-flags comments and coding style. 2023-06-01 11:14:03 +03:00
matrix.scm
maven-parent-pom.scm
maven.scm
mc.scm
mcrypt.scm
medical.scm
mercury.scm
mes.scm
messaging.scm gnu: prosody: Update to 0.12.3. 2023-05-24 11:07:03 +03:00
microcom.scm
minetest.scm
mingw.scm
moe.scm
mold.scm
monitoring.scm
moreutils.scm
motti.scm
mp3.scm
mpd.scm gnu: mympd: Update to 10.3.2. 2023-05-19 16:46:35 +02:00
mpi.scm gnu: Add updater input properties for R and Python packages. 2023-05-31 23:26:12 +02:00
mtools.scm
multiprecision.scm gnu: libtommath: Honor the #:tests? flag. 2023-06-01 15:52:37 +03:00
music.scm gnu: zrythm: Update to 1.0.0-beta.4.9.1. 2023-05-19 13:12:29 +02:00
musl.scm
myrddin.scm
nano.scm
ncdu.scm
ncurses.scm
netpbm.scm
nettle.scm
networking.scm gnu: iperf: Update to 3.13. 2023-06-01 12:42:43 +03:00
nfs.scm
nickle.scm
nicotine.scm
nim.scm
ninja.scm
node-xyz.scm gnu: Add node-global-gradle-clean. 2023-05-29 16:22:33 +02:00
node.scm
notcurses.scm
noweb.scm
nss.scm gnu: nss-certs: Update to 3.88.1. 2023-05-07 13:04:25 -04:00
ntp.scm
nutrition.scm
nvi.scm
ocaml.scm gnu: Add ocaml-pyml. 2023-06-02 16:27:39 +02:00
ocr.scm
onc-rpc.scm
openbox.scm
opencl.scm
opencog.scm
openkinect.scm
openldap.scm
openpgp.scm
openstack.scm
orange.scm
orpheus.scm
ots.scm
package-management.scm gnu: nar-herder: Update to 0-20.b27ca4d. 2023-05-30 16:39:20 +01:00
pantheon.scm
parallel.scm gnu: parallel: Update to 20230522. 2023-06-01 12:55:09 +03:00
pascal.scm
password-utils.scm
patchutils.scm gnu: Add coccinelle. 2023-06-02 16:27:41 +02:00
patool.scm
pciutils.scm
pcre.scm
pdf.scm
pem.scm
pep.scm
perl-check.scm
perl-compression.scm
perl-maths.scm
perl-web.scm
perl.scm
perl6.scm
phabricator.scm
photo.scm
php.scm
piet.scm
pikchr.scm
pkg-config.scm
plan9.scm
plotutils.scm
poedit.scm
polkit.scm
popt.scm
potassco.scm gnu: Add python-clinguin. 2023-05-09 19:54:27 +02:00
presentation.scm
pretty-print.scm
printers.scm
profiling.scm
prolog.scm
protobuf.scm
pth.scm
pulseaudio.scm
pumpio.scm
pure.scm
purescript.scm
pv.scm
pypy.scm
python-build.scm
python-check.scm gnu: Add python-vulture. 2023-05-23 12:29:48 -05:00
python-compression.scm
python-crypto.scm gnu: Add python-crcmod. 2023-05-23 08:55:02 -05:00
python-science.scm gnu: python-distributed: Update to 2023.4.1. 2023-05-11 15:59:22 +02:00
python-web.scm gnu: python-zope-schema: Update to 7.0.1. 2023-05-23 01:20:20 -05:00
python-xyz.scm gnu: python-ipython-documentation: Update dependencies. 2023-06-02 16:08:43 +02:00
python.scm
qt.scm gnu: python-shiboken-2: Add fix for python-pyside-2. 2023-05-10 18:00:37 +02:00
racket.scm
radio.scm
ragel.scm
rails.scm
raspberry-pi.scm
ratpoison.scm
rcm.scm
rdesktop.scm
rdf.scm gnu: sord: Update to 0.16.14. 2023-05-19 13:12:28 +02:00
re2c.scm
readline.scm
rednotebook.scm
regex.scm
robotics.scm
rocm.scm
rpc.scm
rpm.scm
rrdtool.scm
rsync.scm
ruby.scm gnu: ruby-2.7-fixed: Upgrade to 2.7.8 [fixes CVE-2023-{28755, 28756}] 2023-05-23 16:37:04 +02:00
rush.scm
rust-apps.scm
rust.scm Revert "gnu: rust-bootstrap: Remove aarch64 as a supported architecture." 2023-05-09 16:54:29 +03:00
sagemath.scm
samba.scm
sawfish.scm
scanner.scm
scheme.scm gnu: sicp: Build as a single info file. 2023-05-18 23:44:21 -04:00
screen.scm
scribus.scm
scsi.scm
sdl.scm
search.scm gnu: ugrep: Update to 3.11.2. 2023-05-26 20:52:50 +08:00
security-token.scm gnu: Add pcsc-cyberjack. 2023-06-02 19:24:21 +08:00
selinux.scm
sequoia.scm
serialization.scm
serveez.scm
shells.scm gnu: fish: Update to 3.6.1. 2023-06-01 12:18:31 +03:00
shellutils.scm gnu: hstr: Update to 3.1. 2023-06-01 12:38:13 +03:00
simh.scm
simulation.scm
skarnet.scm
skribilo.scm
slang.scm
smalltalk.scm
sml.scm
solidity.scm
speech.scm gnu: ekho: Update to 8.6. 2023-05-25 15:59:33 +02:00
sphinx.scm gnu: python-sphinx-panels: Use older docutils. 2023-05-13 11:03:52 +02:00
spice.scm
spreadsheet.scm
sqlite.scm
squirrel.scm
ssh.scm
sssd.scm gnu: sssd: Fix build 2023-05-19 16:46:34 +02:00
stalonetray.scm
statistics.scm gnu: r-desctools: Update to 0.99.49. 2023-05-31 18:19:55 +02:00
stb.scm
stenography.scm
storage.scm
suckless.scm
sugar.scm
swig.scm
sycl.scm gnu: Add opensycl. 2023-05-22 17:05:22 +02:00
sync.scm
syncthing.scm
syndication.scm gnu: Add morss. 2023-05-14 11:10:24 -03:00
synergy.scm
task-management.scm
task-runners.scm
tbb.scm
tcl.scm
telegram.scm gnu: telegram-desktop: Add missing copyright line. 2023-05-29 09:32:30 +02:00
telephony.scm
terminals.scm gnu: alacritty: Update to 0.12.1. 2023-05-23 10:55:07 +03:00
terraform.scm
tex.scm gnu: texlive-datetime2: Add needed propagated-inputs. 2023-05-11 23:56:24 +02:00
texinfo.scm
text-editors.scm gnu: Rename json-modern-cxx to nlohmann-json. 2023-05-14 12:22:29 +02:00
textutils.scm gnu: dos2unix: Update to 7.5.0. 2023-05-21 23:42:40 -05:00
time.scm gnu: python-arrow: Update to 1.2.3. 2023-05-10 19:27:08 +02:00
tls.scm gnu: guile-gnutls: Fix cross-compilation. 2023-05-11 13:21:45 +02:00
tmux.scm gnu: Add tmux-plugin-mem-cpu-load. 2023-06-02 16:25:44 +02:00
toolkits.scm
tor.scm
toys.scm gnu: lolcat: Update to 1.4. 2023-05-24 20:35:31 +08:00
tree-sitter.scm gnu: tree-sitter-cli: Fix build with 0.20.8 version. 2023-05-07 19:37:56 +03:00
tryton.scm
tv.scm
uglifyjs.scm
uml.scm
unicode.scm
unrtf.scm
upnp.scm
usb-modeswitch.scm
uucp.scm
valgrind.scm gnu: valgrind: Mark as not supported for armhf-linux. 2023-05-25 09:45:02 +01:00
version-control.scm gnu: pre-commit: Update to 3.3.1. 2023-05-14 11:10:24 -03:00
video.scm gnu: yt-dlp: Fix substitution for ffmpeg path. 2023-05-25 12:51:16 +02:00
vim.scm gnu: vim-guix-vim: Update to 0.4.0. 2023-05-23 12:30:31 +03:00
virtualization.scm gnu: criu: Reset timestamps in .egg file. 2023-05-19 16:46:33 +02:00
vlang.scm
vnc.scm
vpn.scm
vulkan.scm gnu: vulkan-loader: Limit tests to x86_64 and i686. 2023-05-15 17:08:32 +03:00
w3m.scm
wdiff.scm
weather.scm
web-browsers.scm gnu: nyxt: Update to 3.1.0. 2023-05-30 15:59:24 +02:00
web.scm gnu: tinyproxy: Update to 1.11.1. 2023-05-25 12:51:16 +02:00
webkit.scm gnu: webkitgtk: Update to 2.40.2. 2023-05-30 13:51:35 +02:00
wget.scm
wine.scm
wireservice.scm gnu: csvkit: Update to 1.1.1. 2023-05-14 23:14:25 +02:00
wm.scm gnu: swaylock-effects: Update to 1.6.11. 2023-06-02 10:47:06 +04:00
wordnet.scm
wv.scm
wxwidgets.scm
xdisorg.scm gnu: xeyes: Update to 1.2.0. 2023-05-25 09:09:27 -05:00
xfce.scm gnu: xfce: Use "Greybird" and "elementary-xfce-dark" as default theme. 2023-05-17 18:12:57 +08:00
xfig.scm
xiph.scm
xml.scm gnu: html-xml-utils: Update to 8.6. 2023-06-01 12:39:58 +03:00
xnee.scm
xorg.scm gnu: xpra: Update to 4.4.5. 2023-05-30 18:13:25 +08:00
zig-xyz.scm
zig.scm
zile.scm
zwave.scm