2015-03-20 06:26:23 -04:00
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;;; GNU Guix --- Functional package management for GNU
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2017-04-14 05:02:21 -04:00
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;;; Copyright © 2015, 2016, 2017 Ricardo Wurmus <rekado@elephly.net>
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2022-08-21 13:49:37 -04:00
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;;; Copyright © 2016, 2020-2022 Efraim Flashner <efraim@flashner.co.il>
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2021-07-03 13:41:58 -04:00
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;;; Copyright © 2020, 2021 Nicolò Balzarotti <nicolo@nixo.xyz>
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2020-10-14 23:05:28 -04:00
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;;; Copyright © 2020 Tim Howes <timhowes@lavabit.com>
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2020-11-13 08:43:12 -05:00
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;;; Copyright © 2020 Tobias Geerinckx-Rice <me@tobias.gr>
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2022-08-21 13:49:37 -04:00
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;;; Copyright © 2021, 2022 Jean-Baptiste Volatier <jbv@pm.me>
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2021-07-03 13:41:58 -04:00
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;;; Copyright © 2021 Simon Tournier <zimon.toutoune@gmail.com>
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2021-11-23 14:42:26 -05:00
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;;; Copyright © 2021 Maxim Cournoyer <maxim.cournoyer@gmail.com>
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2015-03-20 06:26:23 -04:00
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;;;
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;;; This file is part of GNU Guix.
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;;;
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;;; GNU Guix is free software; you can redistribute it and/or modify it
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;;; under the terms of the GNU General Public License as published by
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;;; the Free Software Foundation; either version 3 of the License, or (at
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;;; your option) any later version.
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;;;
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;;; GNU Guix is distributed in the hope that it will be useful, but
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;;; WITHOUT ANY WARRANTY; without even the implied warranty of
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;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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;;; GNU General Public License for more details.
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;;;
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;;; You should have received a copy of the GNU General Public License
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;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>.
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(define-module (gnu packages julia)
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#:use-module ((guix licenses) #:prefix license:)
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#:use-module (guix packages)
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#:use-module (guix download)
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2015-11-30 08:22:18 -05:00
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#:use-module (guix utils)
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#:use-module (guix git-download)
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2015-03-20 06:26:23 -04:00
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#:use-module (guix build-system gnu)
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#:use-module (gnu packages)
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#:use-module (gnu packages algebra)
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#:use-module (gnu packages base)
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2016-07-20 04:36:33 -04:00
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#:use-module (gnu packages compression)
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2020-04-02 05:55:20 -04:00
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#:use-module (gnu packages curl)
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2015-03-20 06:26:23 -04:00
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#:use-module (gnu packages elf)
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#:use-module (gnu packages gcc)
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#:use-module (gnu packages llvm)
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2015-11-30 08:22:18 -05:00
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#:use-module (gnu packages libevent)
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2015-03-20 06:26:23 -04:00
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#:use-module (gnu packages libunwind)
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#:use-module (gnu packages maths)
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#:use-module (gnu packages multiprecision) ; mpfr
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#:use-module (gnu packages pcre)
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#:use-module (gnu packages perl)
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#:use-module (gnu packages pkg-config)
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#:use-module (gnu packages python)
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gnu: Separate Python core packages from the rest.
* gnu/packages/python.scm: Move hundreds of package definitions from here...
* gnu/packages/python-xyz.scm: ...to this new module.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* gnu/packages/ada.scm,
gnu/packages/admin.scm,
gnu/packages/android.scm,
gnu/packages/audio.scm,
gnu/packages/backup.scm,
gnu/packages/benchmark.scm,
gnu/packages/bioinformatics.scm,
gnu/packages/bittorrent.scm,
gnu/packages/calendar.scm,
gnu/packages/check.scm,
gnu/packages/chemistry.scm,
gnu/packages/cluster.scm,
gnu/packages/compression.scm,
gnu/packages/connman.scm,
gnu/packages/crypto.scm,
gnu/packages/cups.scm,
gnu/packages/databases.scm,
gnu/packages/dav.scm,
gnu/packages/direct-connect.scm,
gnu/packages/disk.scm,
gnu/packages/django.scm,
gnu/packages/dlang.scm,
gnu/packages/docker.scm,
gnu/packages/ebook.scm,
gnu/packages/elf.scm,
gnu/packages/emacs.scm,
gnu/packages/emulators.scm,
gnu/packages/engineering.scm,
gnu/packages/enlightenment.scm,
gnu/packages/finance.scm,
gnu/packages/fltk.scm,
gnu/packages/fontutils.scm,
gnu/packages/freedesktop.scm,
gnu/packages/game-development.scm,
gnu/packages/games.scm,
gnu/packages/geo.scm,
gnu/packages/gl.scm,
gnu/packages/glib.scm,
gnu/packages/gnome.scm,
gnu/packages/gnupg.scm,
gnu/packages/gnuzilla.scm,
gnu/packages/graph.scm,
gnu/packages/graphics.scm,
gnu/packages/graphviz.scm,
gnu/packages/gtk.scm,
gnu/packages/ham-radio.scm,
gnu/packages/image-processing.scm,
gnu/packages/image-viewers.scm,
gnu/packages/image.scm,
gnu/packages/irc.scm,
gnu/packages/jrnl.scm,
gnu/packages/julia.scm,
gnu/packages/kde-frameworks.scm,
gnu/packages/key-mon.scm,
gnu/packages/libffi.scm,
gnu/packages/libreoffice.scm,
gnu/packages/libusb.scm,
gnu/packages/lirc.scm,
gnu/packages/logging.scm,
gnu/packages/machine-learning.scm,
gnu/packages/mail.scm,
gnu/packages/mate.scm,
gnu/packages/maths.scm,
gnu/packages/medical.scm,
gnu/packages/messaging.scm,
gnu/packages/monitoring.scm,
gnu/packages/mp3.scm,
gnu/packages/mpd.scm,
gnu/packages/music.scm,
gnu/packages/networking.scm,
gnu/packages/nutrition.scm,
gnu/packages/openldap.scm,
gnu/packages/openstack.scm,
gnu/packages/package-management.scm,
gnu/packages/password-utils.scm,
gnu/packages/patchutils.scm,
gnu/packages/pdf.scm,
gnu/packages/photo.scm,
gnu/packages/polkit.scm,
gnu/packages/protobuf.scm,
gnu/packages/python-crypto.scm,
gnu/packages/python-web.scm,
gnu/packages/qt.scm,
gnu/packages/rdf.scm,
gnu/packages/ruby.scm,
gnu/packages/search.scm,
gnu/packages/selinux.scm,
gnu/packages/serialization.scm,
gnu/packages/shells.scm,
gnu/packages/simulation.scm,
gnu/packages/ssh.scm,
gnu/packages/statistics.scm,
gnu/packages/storage.scm,
gnu/packages/sync.scm,
gnu/packages/terminals.scm,
gnu/packages/textutils.scm,
gnu/packages/time.scm,
gnu/packages/tls.scm,
gnu/packages/tor.scm,
gnu/packages/tryton.scm,
gnu/packages/version-control.scm,
gnu/packages/video.scm,
gnu/packages/virtualization.scm,
gnu/packages/vpn.scm,
gnu/packages/web-browsers.scm,
gnu/packages/web.scm,
gnu/packages/wicd.scm,
gnu/packages/xdisorg.scm,
gnu/packages/xorg.scm: Update module references.
2019-01-15 08:21:30 -05:00
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#:use-module (gnu packages python-xyz)
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2015-03-20 06:26:23 -04:00
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#:use-module (gnu packages textutils)
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2020-04-02 05:55:20 -04:00
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#:use-module (gnu packages ssh)
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2016-09-24 08:16:21 -04:00
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#:use-module (gnu packages tls)
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2015-04-07 04:41:57 -04:00
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#:use-module (gnu packages version-control)
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2021-07-03 13:41:58 -04:00
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#:use-module (gnu packages web)
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2015-11-30 08:25:53 -05:00
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#:use-module (gnu packages wget)
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2015-04-07 04:41:57 -04:00
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#:use-module (ice-9 match))
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2015-03-20 06:26:23 -04:00
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2020-04-02 05:55:20 -04:00
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(define libunwind-julia
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;; The Julia projects requires their patched version.
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;; Get from https://github.com/JuliaLang/julia/tree/master/deps/patches
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(package
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(inherit libunwind)
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(name "libunwind-julia")
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(version "1.3.1")
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(source
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(origin
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(method url-fetch)
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(uri (string-append "mirror://savannah/libunwind/libunwind-"
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version ".tar.gz"))
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(sha256
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(base32
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"1y0l08k6ak1mqbfj6accf9s5686kljwgsl4vcqpxzk5n74wpm6a3"))
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(patches
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2021-12-01 10:53:47 -05:00
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(append
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;; Fix linker issue for i686-linux because GCC10 changed default
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;; (see '-fno-common' option).
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(search-patches "libunwind-julia-fix-GCC10-fno-common.patch")
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(list
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(julia-patch "libunwind-prefer-extbl"
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"0lr4dafw8qyfh8sw8hhbwkql1dlhqv8px7k81y2l20hhxfgnh2m1")
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(julia-patch "libunwind-static-arm"
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"1jk3bmiw61ypcchqkk1fyg5wh8wpggk574wxyfyaic870zh3lhgq")
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(julia-patch "libunwind-cfa-rsp"
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"1aswjhvysahhldbzh1afbf0hsjxrvs6xidsz2i7s1cjkjbdiia1z"))))))
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2022-08-28 14:42:10 -04:00
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(arguments
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(substitute-keyword-arguments (package-arguments libunwind)
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;; Skip tests on this older and patched version of libunwind.
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((#:tests? _ #t) #f)))
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2020-04-02 05:55:20 -04:00
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(home-page "https://github.com/JuliaLang/tree/master/deps/")))
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(define (julia-patch-url version name)
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2019-07-23 17:56:21 -04:00
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(string-append "https://raw.githubusercontent.com/JuliaLang/julia/v" version
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2020-05-10 04:15:09 -04:00
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"/deps/patches/" name ".patch"))
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2019-07-23 17:56:21 -04:00
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2021-11-18 10:20:16 -05:00
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(define-public (julia-patch name sha)
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2021-07-03 13:41:58 -04:00
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(let ((version "1.6.1"))
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2019-07-23 17:56:21 -04:00
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(origin (method url-fetch)
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2020-04-02 05:55:20 -04:00
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(uri (julia-patch-url version name))
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2020-04-07 08:05:29 -04:00
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(sha256 (base32 sha))
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(file-name name))))
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2019-07-23 17:56:21 -04:00
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2020-05-10 04:15:11 -04:00
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(define-public libwhich
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(package
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(name "libwhich")
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(version "1.1.0")
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(source
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(origin
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(method git-fetch)
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(uri (git-reference
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gnu: Remove ".git" from "https://github/…/….git".
Until now, 'lookup-origin' and thus 'lookup-origin-revision' in (guix
swh) would sometimes return #f for these because the ".git" URLs are
redirects to the non-".git" URLs. Consequently, 'guix lint -c archival'
would keep saying "scheduled Software Heritage archival"; likewise, the
fallback download code would fail.
* gnu/packages/ada.scm,
gnu/packages/admin.scm,
gnu/packages/aidc.scm,
gnu/packages/algebra.scm,
gnu/packages/android.scm,
gnu/packages/animation.scm,
gnu/packages/arcan.scm,
gnu/packages/assembly.scm,
gnu/packages/audio.scm,
gnu/packages/authentication.scm,
gnu/packages/avr.scm,
gnu/packages/axoloti.scm,
gnu/packages/backup.scm,
gnu/packages/bash.scm,
gnu/packages/benchmark.scm,
gnu/packages/bioconductor.scm,
gnu/packages/bioinformatics.scm,
gnu/packages/bittorrent.scm,
gnu/packages/boost.scm,
gnu/packages/build-tools.scm,
gnu/packages/c.scm,
gnu/packages/calendar.scm,
gnu/packages/cdrom.scm,
gnu/packages/check.scm,
gnu/packages/chemistry.scm,
gnu/packages/chez.scm,
gnu/packages/clojure.scm,
gnu/packages/code.scm,
gnu/packages/compression.scm,
gnu/packages/compton.scm,
gnu/packages/coq.scm,
gnu/packages/cpp.scm,
gnu/packages/cran.scm,
gnu/packages/crypto.scm,
gnu/packages/curl.scm,
gnu/packages/databases.scm,
gnu/packages/datastructures.scm,
gnu/packages/debug.scm,
gnu/packages/disk.scm,
gnu/packages/distributed.scm,
gnu/packages/django.scm,
gnu/packages/dlang.scm,
gnu/packages/dns.scm,
gnu/packages/docker.scm,
gnu/packages/education.scm,
gnu/packages/efi.scm,
gnu/packages/elixir.scm,
gnu/packages/emacs-xyz.scm,
gnu/packages/embedded.scm,
gnu/packages/emulators.scm,
gnu/packages/engineering.scm,
gnu/packages/erlang.scm,
gnu/packages/fabric-management.scm,
gnu/packages/file-systems.scm,
gnu/packages/finance.scm,
gnu/packages/firmware.scm,
gnu/packages/flashing-tools.scm,
gnu/packages/fonts.scm,
gnu/packages/fontutils.scm,
gnu/packages/fpga.scm,
gnu/packages/game-development.scm,
gnu/packages/games.scm,
gnu/packages/genealogy.scm,
gnu/packages/genimage.scm,
gnu/packages/geo.scm,
gnu/packages/gimp.scm,
gnu/packages/gl.scm,
gnu/packages/gnome-xyz.scm,
gnu/packages/gnome.scm,
gnu/packages/gnuzilla.scm,
gnu/packages/golang.scm,
gnu/packages/gpodder.scm,
gnu/packages/graph.scm,
gnu/packages/graphics.scm,
gnu/packages/graphviz.scm,
gnu/packages/groff.scm,
gnu/packages/groovy.scm,
gnu/packages/gtk.scm,
gnu/packages/guile-xyz.scm,
gnu/packages/guile.scm,
gnu/packages/hardware.scm,
gnu/packages/haskell-apps.scm,
gnu/packages/haskell-xyz.scm,
gnu/packages/hexedit.scm,
gnu/packages/i2p.scm,
gnu/packages/ibus.scm,
gnu/packages/image-processing.scm,
gnu/packages/image-viewers.scm,
gnu/packages/image.scm,
gnu/packages/ipfs.scm,
gnu/packages/java-graphics.scm,
gnu/packages/java-maths.scm,
gnu/packages/java.scm,
gnu/packages/javascript.scm,
gnu/packages/jrnl.scm,
gnu/packages/julia.scm,
gnu/packages/jupyter.scm,
gnu/packages/kodi.scm,
gnu/packages/language.scm,
gnu/packages/lego.scm,
gnu/packages/less.scm,
gnu/packages/libusb.scm,
gnu/packages/linux.scm,
gnu/packages/lirc.scm,
gnu/packages/lisp-xyz.scm,
gnu/packages/llvm.scm,
gnu/packages/logging.scm,
gnu/packages/lolcode.scm,
gnu/packages/lua.scm,
gnu/packages/lxde.scm,
gnu/packages/lxqt.scm,
gnu/packages/machine-learning.scm,
gnu/packages/mail.scm,
gnu/packages/markup.scm,
gnu/packages/maths.scm,
gnu/packages/maven.scm,
gnu/packages/mes.scm,
gnu/packages/messaging.scm,
gnu/packages/monitoring.scm,
gnu/packages/mpd.scm,
gnu/packages/music.scm,
gnu/packages/networking.scm,
gnu/packages/node-xyz.scm,
gnu/packages/ocaml.scm,
gnu/packages/ocr.scm,
gnu/packages/onc-rpc.scm,
gnu/packages/opencl.scm,
gnu/packages/opencog.scm,
gnu/packages/pantheon.scm,
gnu/packages/password-utils.scm,
gnu/packages/patchutils.scm,
gnu/packages/pdf.scm,
gnu/packages/perl6.scm,
gnu/packages/phabricator.scm,
gnu/packages/popt.scm,
gnu/packages/printers.scm,
gnu/packages/prolog.scm,
gnu/packages/protobuf.scm,
gnu/packages/pulseaudio.scm,
gnu/packages/python-crypto.scm,
gnu/packages/python-web.scm,
gnu/packages/python-xyz.scm,
gnu/packages/qt.scm,
gnu/packages/radio.scm,
gnu/packages/rails.scm,
gnu/packages/rdf.scm,
gnu/packages/rednotebook.scm,
gnu/packages/rpc.scm,
gnu/packages/rsync.scm,
gnu/packages/ruby.scm,
gnu/packages/rust.scm,
gnu/packages/scheme.scm,
gnu/packages/screen.scm,
gnu/packages/security-token.scm,
gnu/packages/selinux.scm,
gnu/packages/serialization.scm,
gnu/packages/shells.scm,
gnu/packages/shellutils.scm,
gnu/packages/simh.scm,
gnu/packages/sml.scm,
gnu/packages/ssh.scm,
gnu/packages/statistics.scm,
gnu/packages/stenography.scm,
gnu/packages/sync.scm,
gnu/packages/syncthing.scm,
gnu/packages/synergy.scm,
gnu/packages/telephony.scm,
gnu/packages/terminals.scm,
gnu/packages/tex.scm,
gnu/packages/texinfo.scm,
gnu/packages/text-editors.scm,
gnu/packages/textutils.scm,
gnu/packages/time.scm,
gnu/packages/tmux.scm,
gnu/packages/tor.scm,
gnu/packages/toys.scm,
gnu/packages/version-control.scm,
gnu/packages/video.scm,
gnu/packages/vim.scm,
gnu/packages/virtualization.scm,
gnu/packages/vlang.scm,
gnu/packages/vnc.scm,
gnu/packages/vpn.scm,
gnu/packages/web-browsers.scm,
gnu/packages/web.scm,
gnu/packages/wireservice.scm,
gnu/packages/wm.scm,
gnu/packages/wxwidgets.scm,
gnu/packages/xdisorg.scm,
gnu/packages/xml.scm,
gnu/packages/xorg.scm,
tests/lint.scm: Remove trailing ".git" from 'git-reference' URL.
2020-07-12 16:53:28 -04:00
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(url "https://github.com/vtjnash/libwhich")
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2020-05-10 04:15:11 -04:00
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;; fixes linux-vdso.so related tests
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(commit "87cffe10080c98e7b5786c5166e420bf1ada1d41")))
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2020-05-10 04:15:12 -04:00
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(file-name (string-append name "-" version "-checkout"))
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2020-05-10 04:15:11 -04:00
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(sha256
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(base32
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"1bpa0fcqpa3ai3hm8mz0p13bf76fsq53wsfcx5qw302zh22108xr"))))
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(arguments
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`(#:make-flags
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2020-11-13 08:43:12 -05:00
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(list (string-append "CC=" ,(cc-for-target)))
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2020-05-10 04:15:11 -04:00
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#:phases
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(modify-phases %standard-phases
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(delete 'configure)
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(add-before 'check 'set-ld-library-path
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2020-11-13 09:12:52 -05:00
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(lambda* (#:key native-inputs inputs #:allow-other-keys)
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2020-05-10 04:15:11 -04:00
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(setenv "LD_LIBRARY_PATH"
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2020-11-13 09:12:52 -05:00
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(string-append (assoc-ref (or native-inputs inputs) "zlib")
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"/lib"))))
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2020-05-10 04:15:11 -04:00
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(replace 'install
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(lambda* (#:key outputs #:allow-other-keys)
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(let ((out (assoc-ref outputs "out")))
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(install-file "libwhich" (string-append out "/bin")))
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#t)))))
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(native-inputs
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;; used for tests
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2021-12-13 11:18:24 -05:00
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(list zlib))
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2020-05-10 04:15:11 -04:00
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(build-system gnu-build-system)
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(home-page "https://github.com/vtjnash/libwhich")
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(synopsis "Like @code{which}, for dynamic libraries")
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(description "@code{libwhich} is like @code{which}, but for dynamic
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|
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|
libraries. It is also a bit like @code{ldd} and @code{otool -L}.")
|
|
|
|
(license license:expat)))
|
|
|
|
|
2015-03-20 06:26:23 -04:00
|
|
|
(define-public julia
|
|
|
|
(package
|
|
|
|
(name "julia")
|
2022-08-21 13:49:37 -04:00
|
|
|
(version "1.6.7")
|
2015-03-20 06:26:23 -04:00
|
|
|
(source (origin
|
|
|
|
(method url-fetch)
|
|
|
|
(uri (string-append
|
|
|
|
"https://github.com/JuliaLang/julia/releases/download/v"
|
2016-05-25 11:11:57 -04:00
|
|
|
version "/julia-" version ".tar.gz"))
|
2015-03-20 06:26:23 -04:00
|
|
|
(sha256
|
|
|
|
(base32
|
2022-08-21 13:49:37 -04:00
|
|
|
"0q9xgdpvdkskpzl294w215f6c15c5jk276c9dah5f5w4np3ivbvl"))
|
2020-04-02 05:55:20 -04:00
|
|
|
(patches
|
2021-11-24 20:24:42 -05:00
|
|
|
(search-patches "julia-SOURCE_DATE_EPOCH-mtime.patch"
|
|
|
|
"julia-allow-parallel-build.patch"))))
|
2015-03-20 06:26:23 -04:00
|
|
|
(build-system gnu-build-system)
|
|
|
|
(arguments
|
2015-04-07 04:41:57 -04:00
|
|
|
`(#:test-target "test"
|
2015-03-20 06:26:23 -04:00
|
|
|
#:modules ((ice-9 match)
|
|
|
|
(guix build gnu-build-system)
|
|
|
|
(guix build utils))
|
2015-04-14 03:55:35 -04:00
|
|
|
|
2021-07-27 09:37:05 -04:00
|
|
|
;; The test suite takes many times longer than building and
|
|
|
|
;; can easily fail on smaller machines when they run out of memory.
|
|
|
|
#:tests? ,(not (target-aarch64?))
|
|
|
|
|
2016-09-24 08:16:21 -04:00
|
|
|
;; Do not strip binaries to keep support for full backtraces.
|
|
|
|
;; See https://github.com/JuliaLang/julia/issues/17831
|
|
|
|
#:strip-binaries? #f
|
2015-04-14 03:55:35 -04:00
|
|
|
|
|
|
|
;; The DSOs use $ORIGIN to refer to each other, but (guix build
|
|
|
|
;; gremlin) doesn't support it yet, so skip this phase.
|
|
|
|
#:validate-runpath? #f
|
|
|
|
|
2015-03-20 06:26:23 -04:00
|
|
|
#:phases
|
2015-06-24 09:21:46 -04:00
|
|
|
(modify-phases %standard-phases
|
|
|
|
(delete 'configure)
|
2016-05-25 11:11:57 -04:00
|
|
|
(add-after 'unpack 'prepare-deps
|
|
|
|
(lambda* (#:key inputs #:allow-other-keys)
|
2020-04-07 08:05:29 -04:00
|
|
|
;; needed by libwhich
|
|
|
|
(setenv "LD_LIBRARY_PATH"
|
|
|
|
(string-join (map (lambda (pkg)
|
2019-07-23 17:56:21 -04:00
|
|
|
(string-append (assoc-ref inputs pkg)
|
|
|
|
"/lib"))
|
2021-07-03 13:41:58 -04:00
|
|
|
'("curl" "dsfmt"
|
2020-04-02 05:55:20 -04:00
|
|
|
"gmp" "lapack"
|
2021-07-03 13:41:58 -04:00
|
|
|
"libssh2" "libnghttp2" "libgit2"
|
2020-04-02 05:55:20 -04:00
|
|
|
"mbedtls" "mpfr"
|
|
|
|
"openblas" "openlibm" "pcre2"
|
2021-07-03 13:41:58 -04:00
|
|
|
"suitesparse" "gfortran:lib"))
|
|
|
|
":"))))
|
2017-06-22 06:55:11 -04:00
|
|
|
;; FIXME: Building the documentation requires Julia packages that
|
|
|
|
;; would be downloaded from the Internet. We should build them in a
|
|
|
|
;; separate build phase.
|
|
|
|
(add-after 'unpack 'disable-documentation
|
2016-09-24 08:16:21 -04:00
|
|
|
(lambda _
|
2017-06-22 06:55:11 -04:00
|
|
|
(substitute* "Makefile"
|
|
|
|
(("(install: .*) \\$\\(BUILDROOT\\)/doc/_build/html/en/index.html" _ line)
|
|
|
|
(string-append line "\n"))
|
|
|
|
(("src ui doc deps")
|
2021-11-23 14:42:26 -05:00
|
|
|
"src ui deps"))))
|
2020-05-10 04:15:12 -04:00
|
|
|
(add-after 'unpack 'use-system-libwhich
|
|
|
|
(lambda* (#:key inputs #:allow-other-keys)
|
|
|
|
;; don't build it
|
|
|
|
(substitute* "deps/Makefile"
|
|
|
|
(("DEP_LIBS \\+= libwhich") ""))
|
|
|
|
;; call our version
|
|
|
|
(substitute* "base/Makefile"
|
|
|
|
(("\\$\\$\\(build_depsbindir\\)/libwhich")
|
2021-11-23 14:42:26 -05:00
|
|
|
(search-input-file inputs "/bin/libwhich")))))
|
2022-08-21 13:49:37 -04:00
|
|
|
(add-after 'unpack 'activate-gnu-source-for-loader
|
|
|
|
(lambda _
|
|
|
|
(substitute* "cli/Makefile"
|
|
|
|
(("LOADER_CFLAGS =") "LOADER_CFLAGS = -D_GNU_SOURCE"))))
|
2021-08-05 12:41:14 -04:00
|
|
|
(add-after 'unpack 'change-number-of-precompile-statements
|
|
|
|
(lambda _
|
|
|
|
;; Remove nss-certs drops the number of statements below 1200,
|
|
|
|
;; causing the build to fail prematurely.
|
|
|
|
(substitute* "contrib/generate_precompile.jl"
|
2021-11-23 14:42:26 -05:00
|
|
|
(("1200") "1100"))))
|
2021-08-05 06:44:23 -04:00
|
|
|
;; For some reason libquadmath is unavailable on this architecture.
|
|
|
|
;; https://github.com/JuliaLang/julia/issues/41613
|
|
|
|
,@(if (target-aarch64?)
|
|
|
|
'((add-after 'unpack 'drop-libquadmath-on-aarch64
|
|
|
|
(lambda _
|
|
|
|
(substitute* '("contrib/fixup-libgfortran.sh"
|
|
|
|
"deps/csl.mk"
|
|
|
|
"base/Makefile")
|
|
|
|
((".*libquadmath.*") ""))
|
|
|
|
(substitute* "Makefile"
|
2022-08-21 13:49:37 -04:00
|
|
|
(("libquadmath ") "")))))
|
2021-08-05 06:44:23 -04:00
|
|
|
'())
|
2016-09-24 08:16:21 -04:00
|
|
|
(add-before 'check 'set-home
|
|
|
|
;; Some tests require a home directory to be set.
|
2022-08-21 13:49:37 -04:00
|
|
|
(lambda _ (setenv "HOME" "/tmp")))
|
2015-11-30 08:25:53 -05:00
|
|
|
(add-before 'build 'fix-include-and-link-paths
|
2020-04-07 08:05:29 -04:00
|
|
|
(lambda* (#:key inputs #:allow-other-keys)
|
|
|
|
;; LIBUTF8PROC is a linker flag, not a build target. It is
|
|
|
|
;; included in the LIBFILES_* variable which is used as a
|
|
|
|
;; collection of build targets and a list of libraries to link
|
|
|
|
;; against.
|
|
|
|
(substitute* "src/flisp/Makefile"
|
2020-04-02 05:55:20 -04:00
|
|
|
(("\\$\\(BUILDDIR\\)/\\$\\(EXENAME\\)\\$\\(EXE\\): \\$\\(OBJS\\) \\$\\(LIBFILES_release\\)")
|
|
|
|
"$(BUILDDIR)/$(EXENAME)$(EXE): $(OBJS) $(LLT_release)")
|
|
|
|
(("\\$\\(BUILDDIR\\)/\\$\\(EXENAME\\)-debug$(EXE): \\$\\(DOBJS\\) \\$\\(LIBFILES_debug\\)")
|
|
|
|
"$(BUILDDIR)/$(EXENAME)-debug\\$\\(EXE\\): $(DOBJS) $(LLT_debug)"))
|
2015-11-30 08:25:53 -05:00
|
|
|
|
2020-04-07 08:05:29 -04:00
|
|
|
;; The REPL must be linked with libuv.
|
2021-07-03 13:41:58 -04:00
|
|
|
(substitute* "cli/Makefile"
|
2020-04-07 08:05:29 -04:00
|
|
|
(("JLDFLAGS \\+= ")
|
|
|
|
(string-append "JLDFLAGS += "
|
|
|
|
(assoc-ref %build-inputs "libuv")
|
|
|
|
"/lib/libuv.so ")))
|
2015-11-30 08:25:53 -05:00
|
|
|
|
2020-04-07 08:05:29 -04:00
|
|
|
(substitute* "base/Makefile"
|
|
|
|
(("\\$\\(build_includedir\\)/uv/errno.h")
|
2021-07-16 10:01:49 -04:00
|
|
|
(search-input-file inputs "/include/uv/errno.h")))))
|
2015-11-30 08:25:53 -05:00
|
|
|
(add-before 'build 'replace-default-shell
|
2020-04-07 08:05:29 -04:00
|
|
|
(lambda _
|
|
|
|
(substitute* "base/client.jl"
|
2021-11-23 14:42:26 -05:00
|
|
|
(("/bin/sh") (which "sh")))))
|
2021-07-03 13:41:58 -04:00
|
|
|
(add-before 'build 'shared-objects-paths
|
|
|
|
(lambda* (#:key inputs #:allow-other-keys)
|
|
|
|
(let ((jlpath
|
|
|
|
(lambda (pkgname)
|
|
|
|
(string-append
|
|
|
|
"stdlib/" pkgname "_jll/src/" pkgname "_jll.jl")))
|
|
|
|
(from
|
|
|
|
(lambda (libname)
|
|
|
|
(string-append "const " libname " = .*\\.so")))
|
|
|
|
(to
|
|
|
|
(lambda* (pkg libname #:optional libname_jl)
|
|
|
|
(string-append
|
|
|
|
"const " (or libname_jl libname) "= \""
|
|
|
|
(assoc-ref inputs pkg) "/lib/" libname ".so"))))
|
|
|
|
(substitute* (jlpath "dSFMT")
|
|
|
|
(((from "libdSFMT")) (to "dsfmt" "libdSFMT")))
|
|
|
|
(substitute* (jlpath "GMP")
|
|
|
|
(((from "libgmp")) (to "gmp" "libgmp"))
|
|
|
|
(((from "libgmpxx")) (to "gmp" "libgmpxx")))
|
|
|
|
(substitute* (jlpath "libLLVM")
|
|
|
|
(((from "libLLVM")) (to "llvm" "libLLVM")))
|
|
|
|
(substitute* (jlpath "LibCURL")
|
|
|
|
(((from "libcurl")) (to "curl" "libcurl")))
|
|
|
|
(substitute* (jlpath "LibGit2")
|
|
|
|
(((from "libgit2")) (to "libgit2" "libgit2")))
|
|
|
|
(substitute* (jlpath "LibSSH2")
|
|
|
|
(((from "libssh2")) (to "libssh2" "libssh2")))
|
|
|
|
(substitute* (jlpath "LibUV")
|
|
|
|
(((from "libuv")) (to "libuv" "libuv")))
|
|
|
|
(substitute* (jlpath "LibUnwind")
|
|
|
|
(((from "libunwind")) (to "libunwind" "libunwind")))
|
|
|
|
(substitute* (jlpath "MPFR")
|
|
|
|
(((from "libmpfr")) (to "mpfr" "libmpfr")))
|
|
|
|
(substitute* (jlpath "MbedTLS")
|
|
|
|
;; For the newer version of mbedtls-apache:
|
|
|
|
(("libmbedcrypto.so.5") "libmbedcrypto.so.6")
|
|
|
|
(((from "libmbedcrypto")) (to "mbedtls" "libmbedcrypto"))
|
|
|
|
(((from "libmbedtls")) (to "mbedtls" "libmbedtls"))
|
|
|
|
(((from "libmbedx509")) (to "mbedtls" "libmbedx509")))
|
|
|
|
(substitute* (jlpath "nghttp2")
|
|
|
|
(((from "libnghttp2")) (to "libnghttp2" "libnghttp2")))
|
|
|
|
(substitute* (jlpath "OpenBLAS")
|
|
|
|
(((from "libopenblas")) (to "openblas" "libopenblas")))
|
|
|
|
(substitute* (jlpath "OpenLibm")
|
|
|
|
(((from "libopenlibm")) (to "openlibm" "libopenlibm")))
|
|
|
|
(substitute* (jlpath "PCRE2")
|
|
|
|
(((from "libpcre2")) (to "pcre2" "libpcre2" "libpcre2_8")))
|
|
|
|
(substitute* (jlpath "SuiteSparse")
|
|
|
|
(((from "libamd")) (to "suitesparse" "libamd"))
|
|
|
|
(((from "libbtf")) (to "suitesparse" "libbtf"))
|
|
|
|
(((from "libcamd")) (to "suitesparse" "libcamd"))
|
|
|
|
(((from "libccolamd")) (to "suitesparse" "libccolamd"))
|
|
|
|
(((from "libcholmod")) (to "suitesparse" "libcholmod"))
|
|
|
|
(((from "libcolamd")) (to "suitesparse" "libcolamd"))
|
|
|
|
(((from "libklu")) (to "suitesparse" "libklu"))
|
|
|
|
(((from "libldl")) (to "suitesparse" "libldl"))
|
|
|
|
(((from "librbio")) (to "suitesparse" "librbio"))
|
|
|
|
(((from "libspqr")) (to "suitesparse" "libspqr"))
|
|
|
|
(((from "libsuitesparse")) (to "suitesparse" "libsuitesparse"))
|
|
|
|
(((from "libsuitesparseconfig"))
|
|
|
|
(to "suitesparse" "libsuitesparseconfig"))
|
|
|
|
(((from "libumfpack")) (to "suitesparse" "libumfpack")))
|
|
|
|
(substitute* (jlpath "Zlib")
|
2021-11-23 14:42:26 -05:00
|
|
|
(((from "libz")) (to "zlib" "libz"))))))
|
|
|
|
(add-after 'unpack 'enable-parallel-tests
|
2021-11-25 18:35:54 -05:00
|
|
|
(lambda* (#:key parallel-tests? #:allow-other-keys)
|
|
|
|
(setenv "JULIA_CPU_THREADS" (if parallel-tests?
|
2021-11-23 14:42:26 -05:00
|
|
|
(number->string (parallel-job-count))
|
|
|
|
"1"))
|
|
|
|
(format #t "JULIA_CPU_THREADS environment variable set to ~a~%"
|
|
|
|
(getenv "JULIA_CPU_THREADS"))))
|
2021-07-03 13:41:58 -04:00
|
|
|
(add-after 'unpack 'adjust-test-suite
|
|
|
|
(lambda* (#:key inputs #:allow-other-keys)
|
2021-08-18 05:05:05 -04:00
|
|
|
(let ((pcre2 (assoc-ref inputs "pcre2"))
|
2021-07-03 13:41:58 -04:00
|
|
|
(mbedtls-apache (assoc-ref inputs "mbedtls"))
|
|
|
|
(mpfr (assoc-ref inputs "mpfr"))
|
2021-08-18 05:07:33 -04:00
|
|
|
(gmp (assoc-ref inputs "gmp"))
|
|
|
|
(nghttp2 (assoc-ref inputs "libnghttp2"))
|
2022-08-21 13:49:37 -04:00
|
|
|
(zlib (assoc-ref inputs "zlib"))
|
2021-07-03 13:41:58 -04:00
|
|
|
(suitesparse (assoc-ref inputs "suitesparse")))
|
|
|
|
;; Some tests only check to see if the input is the correct version.
|
2021-08-18 05:05:05 -04:00
|
|
|
(substitute* "stdlib/PCRE2_jll/test/runtests.jl"
|
2022-08-21 13:49:37 -04:00
|
|
|
(("10.40.0") ,(package-version pcre2)))
|
2021-07-03 13:41:58 -04:00
|
|
|
(substitute* "stdlib/MbedTLS_jll/test/runtests.jl"
|
|
|
|
(("2.24.0") ,(package-version mbedtls-apache)))
|
|
|
|
(substitute* "stdlib/MPFR_jll/test/runtests.jl"
|
|
|
|
(("4.1.0") ,(package-version mpfr)))
|
2021-08-18 05:07:33 -04:00
|
|
|
(substitute* "stdlib/GMP_jll/test/runtests.jl"
|
|
|
|
(("6.2.0") ,(package-version gmp)))
|
|
|
|
(substitute* "stdlib/nghttp2_jll/test/runtests.jl"
|
|
|
|
(("1.41.0") ,(package-version nghttp2)))
|
2022-08-21 13:49:37 -04:00
|
|
|
(substitute* "stdlib/Zlib_jll/test/runtests.jl"
|
|
|
|
(("1.2.12") ,(package-version zlib)))
|
2021-07-03 13:41:58 -04:00
|
|
|
(substitute* "stdlib/SuiteSparse_jll/test/runtests.jl"
|
|
|
|
(("5004") ,(string-replace-substring
|
|
|
|
(version-major+minor
|
2021-11-23 14:42:26 -05:00
|
|
|
(package-version suitesparse)) "." "0"))))))
|
2015-11-30 08:25:53 -05:00
|
|
|
(add-before 'check 'disable-broken-tests
|
|
|
|
(lambda _
|
2021-07-03 13:41:58 -04:00
|
|
|
;; disabling REPL tests because they require a stdin
|
|
|
|
;; There are some read-only precompile issues in the 1.6 series.
|
|
|
|
;; https://github.com/JuliaLang/julia/pull/41614
|
|
|
|
;; https://github.com/JuliaLang/julia/issues/41156
|
2020-04-07 08:05:29 -04:00
|
|
|
(substitute* "test/choosetests.jl"
|
2022-08-21 13:49:37 -04:00
|
|
|
(("\"precompile\",") ""))
|
2021-07-03 13:41:58 -04:00
|
|
|
;; Dates/io tests fail on master when networking is unavailable
|
2020-05-10 04:15:12 -04:00
|
|
|
;; https://github.com/JuliaLang/julia/issues/34655
|
|
|
|
(substitute* "stdlib/Dates/test/io.jl"
|
2021-11-24 20:24:41 -05:00
|
|
|
(("using Dates") "import Dates
|
|
|
|
using Dates: @dateformat_str, Date, DateTime, DateFormat, Time"))
|
2021-07-03 13:41:58 -04:00
|
|
|
;; julia embeds a certificate, we are not doing that
|
|
|
|
(substitute* "stdlib/MozillaCACerts_jll/test/runtests.jl"
|
|
|
|
(("@test isfile\\(MozillaCACerts_jll.cacert\\)")
|
|
|
|
"@test_broken isfile(MozillaCACerts_jll.cacert)"))
|
|
|
|
;; since certificate is not present some tests are failing in network option
|
|
|
|
(substitute* "usr/share/julia/stdlib/v1.6/NetworkOptions/test/runtests.jl"
|
|
|
|
(("@test isfile\\(bundled_ca_roots\\(\\)\\)")
|
|
|
|
"@test_broken isfile(bundled_ca_roots())")
|
|
|
|
(("@test ispath\\(ca_roots_path\\(\\)\\)")
|
|
|
|
"@test_broken ispath(ca_roots_path())")
|
|
|
|
(("@test ca_roots_path\\(\\) \\!= bundled_ca_roots\\(\\)")
|
|
|
|
"@test_broken ca_roots_path() != bundled_ca_roots()"))
|
|
|
|
;; WARNING: failed to select UTF-8 encoding, using ASCII
|
|
|
|
;; Using 'setlocale' doesn't affect the test failures.
|
|
|
|
;(setlocale LC_ALL "en_US.utf8")
|
|
|
|
;(setenv "LC_ALL" "en_US.utf8")
|
|
|
|
(substitute* "test/cmdlineargs.jl"
|
|
|
|
(("test v\\[3") "test_broken v[3")
|
2021-11-24 20:24:41 -05:00
|
|
|
(("test isempty\\(v\\[3") "test_broken isempty(v[3"))
|
2022-08-21 13:49:37 -04:00
|
|
|
;; These test(s) randomly fails because they depend on CPU.
|
2021-11-24 20:24:41 -05:00
|
|
|
(substitute* "test/math.jl"
|
|
|
|
;; @test_broken cannot be used because if the test randomly
|
|
|
|
;; passes, then it also raises an error.
|
|
|
|
(("@test isinf\\(log1p\\(-one\\(T\\)\\)\\)")
|
|
|
|
" "))))
|
2021-07-03 13:41:58 -04:00
|
|
|
(add-before 'install 'symlink-libraries
|
|
|
|
(lambda* (#:key inputs outputs #:allow-other-keys)
|
|
|
|
(let ((link
|
|
|
|
(lambda (pkgname dir pred)
|
|
|
|
(map (lambda (file)
|
|
|
|
(unless (file-exists?
|
|
|
|
(string-append dir (basename file)))
|
|
|
|
(symlink file (string-append dir (basename file)))))
|
|
|
|
(find-files (string-append (assoc-ref inputs pkgname)
|
|
|
|
"/lib") pred)))))
|
|
|
|
(link "curl" "usr/lib/" "\\.so") ; missing libpthreads libLLVM-11jl
|
|
|
|
(link "suitesparse" "usr/lib/julia/" "libbtf\\.so")
|
|
|
|
(link "suitesparse" "usr/lib/julia/" "libklu\\.so")
|
|
|
|
(link "suitesparse" "usr/lib/julia/" "libldl\\.so")
|
|
|
|
(link "suitesparse" "usr/lib/julia/" "librbio\\.so")
|
|
|
|
(link "gmp" "usr/lib/julia/" "libgmpxx\\.so")
|
|
|
|
(link "libuv" "usr/lib/julia/" "libuv\\.so")
|
|
|
|
(link "zlib" "usr/lib/julia/" "libz\\.so")
|
|
|
|
(link "libunwind" "usr/lib/julia/" "libunwind\\.so")
|
|
|
|
(symlink (string-append (assoc-ref inputs "p7zip") "/bin/7z")
|
2021-11-23 14:42:26 -05:00
|
|
|
"usr/libexec/7z"))))
|
2021-07-03 13:41:58 -04:00
|
|
|
(add-after 'install 'symlink-llvm-utf8proc
|
|
|
|
(lambda* (#:key inputs outputs #:allow-other-keys)
|
|
|
|
(let* ((out (assoc-ref outputs "out"))
|
|
|
|
(link
|
|
|
|
(lambda (pkgname pred)
|
|
|
|
(map (lambda (file)
|
|
|
|
(unless (file-exists?
|
|
|
|
(string-append out "/lib/julia/"
|
|
|
|
(basename file)))
|
|
|
|
(symlink file (string-append out "/lib/julia/"
|
|
|
|
(basename file)))))
|
|
|
|
(find-files (string-append (assoc-ref inputs pkgname)
|
|
|
|
"/lib") pred)))))
|
2021-10-16 15:12:14 -04:00
|
|
|
(link "llvm" "libLLVM-11jl\\.so")
|
2021-11-23 14:42:26 -05:00
|
|
|
(link "utf8proc" "libutf8proc\\.so"))))
|
2020-05-10 04:15:12 -04:00
|
|
|
(add-after 'install 'make-wrapper
|
|
|
|
(lambda* (#:key inputs outputs #:allow-other-keys)
|
|
|
|
(let* ((out (assoc-ref outputs "out"))
|
|
|
|
(bin (string-append out "/bin"))
|
|
|
|
(program "julia"))
|
|
|
|
(with-directory-excursion bin
|
|
|
|
(wrap-program program
|
|
|
|
`("JULIA_LOAD_PATH" ":" prefix
|
2021-07-03 13:41:58 -04:00
|
|
|
("" "$JULIA_LOAD_PATH"))
|
2020-05-10 04:15:12 -04:00
|
|
|
`("JULIA_DEPOT_PATH" ":" prefix
|
2021-11-23 14:42:26 -05:00
|
|
|
("" "$JULIA_DEPOT_PATH"))))))))
|
2015-03-20 06:26:23 -04:00
|
|
|
#:make-flags
|
|
|
|
(list
|
2022-08-21 13:49:37 -04:00
|
|
|
"VERBOSE=1" ;; more helpful logging of what make is doing
|
2020-05-10 04:15:12 -04:00
|
|
|
(string-append "prefix=" (assoc-ref %outputs "out"))
|
2015-04-07 04:41:57 -04:00
|
|
|
|
2021-07-03 13:41:58 -04:00
|
|
|
;; Passing the MARCH or JULIA_CPU_TARGET flag is necessary to build
|
|
|
|
;; binary substitutes for the supported architectures. See also
|
|
|
|
;; https://docs.julialang.org/en/v1/devdocs/sysimg/#Specifying-multiple-system-image-targets
|
2020-04-07 08:05:29 -04:00
|
|
|
,(match (or (%current-target-system)
|
|
|
|
(%current-system))
|
2021-07-03 13:41:58 -04:00
|
|
|
("x86_64-linux"
|
|
|
|
;; These are the flags that upstream uses for their binaries.
|
|
|
|
"JULIA_CPU_TARGET=generic;generic,-cx16,clone_all;sandybridge,-xsaveopt,clone_all;haswell,-rdrnd,base(1)")
|
2020-04-07 08:05:29 -04:00
|
|
|
("i686-linux" "MARCH=pentium4")
|
2021-07-07 02:08:49 -04:00
|
|
|
("armhf-linux" "JULIA_CPU_TARGET=armv7-a,neon")
|
|
|
|
("powerpc64le-linux" "JULIA_CPU_TARGET=pwr8")
|
2020-04-07 08:05:29 -04:00
|
|
|
;; Prevent errors when querying this package on unsupported
|
|
|
|
;; platforms, e.g. when running "guix package --search="
|
2021-07-07 02:08:49 -04:00
|
|
|
;; and also of targeting the builder's architecture.
|
|
|
|
(_ "JULIA_CPU_TARGET=generic"))
|
2015-04-07 04:41:57 -04:00
|
|
|
|
2021-07-03 13:41:58 -04:00
|
|
|
"CONFIG_SHELL=bash -x" ; needed to build bundled libraries
|
|
|
|
"USE_BINARYBUILDER=0"
|
|
|
|
;; list (and order!) of "USE_SYSTEM_*" is here:
|
|
|
|
;; https://github.com/JuliaLang/julia/blob/v1.6.0/Make.inc
|
|
|
|
"USE_SYSTEM_CSL=1"
|
|
|
|
"USE_SYSTEM_LLVM=1"
|
|
|
|
"USE_SYSTEM_LIBUNWIND=1"
|
|
|
|
"USE_SYSTEM_PCRE=1"
|
|
|
|
"USE_SYSTEM_OPENLIBM=1"
|
2020-04-02 05:55:20 -04:00
|
|
|
"USE_SYSTEM_DSFMT=1"
|
2020-04-07 08:05:29 -04:00
|
|
|
"USE_SYSTEM_BLAS=1"
|
2021-07-03 13:41:58 -04:00
|
|
|
"USE_SYSTEM_LAPACK=1"
|
|
|
|
"USE_SYSTEM_GMP=1"
|
|
|
|
"USE_SYSTEM_MPFR=1"
|
|
|
|
"USE_SYSTEM_SUITESPARSE=1"
|
|
|
|
"USE_SYSTEM_LIBUV=1"
|
|
|
|
"USE_SYSTEM_UTF8PROC=1"
|
|
|
|
"USE_SYSTEM_MBEDTLS=1"
|
|
|
|
"USE_SYSTEM_LIBSSH2=1"
|
|
|
|
"USE_SYSTEM_NGHTTP2=1"
|
|
|
|
"USE_SYSTEM_CURL=1"
|
|
|
|
"USE_SYSTEM_LIBGIT2=1"
|
|
|
|
"USE_SYSTEM_PATCHELF=1"
|
|
|
|
"USE_SYSTEM_ZLIB=1"
|
|
|
|
"USE_SYSTEM_P7ZIP=1"
|
|
|
|
|
|
|
|
"NO_GIT=1" ; build from release tarball.
|
|
|
|
"USE_BLAS64=0" ; needed when USE_SYSTEM_BLAS=1
|
2020-04-07 08:05:29 -04:00
|
|
|
"LIBBLAS=-lopenblas"
|
|
|
|
"LIBBLASNAME=libopenblas"
|
2015-03-20 06:26:23 -04:00
|
|
|
|
2020-04-02 05:55:20 -04:00
|
|
|
(string-append "SUITESPARSE_INC=-I "
|
|
|
|
(assoc-ref %build-inputs "suitesparse")
|
|
|
|
"/include")
|
2021-07-03 13:41:58 -04:00
|
|
|
"USE_GPL_LIBS=1" ; proudly
|
2020-04-07 08:05:29 -04:00
|
|
|
(string-append "UTF8PROC_INC="
|
|
|
|
(assoc-ref %build-inputs "utf8proc")
|
|
|
|
"/include")
|
2021-07-03 13:41:58 -04:00
|
|
|
"LLVM_VER=11.0.0"
|
2017-06-22 06:55:11 -04:00
|
|
|
|
2020-04-07 08:05:29 -04:00
|
|
|
"USE_LLVM_SHLIB=1"
|
|
|
|
(string-append "LIBUV="
|
|
|
|
(assoc-ref %build-inputs "libuv")
|
|
|
|
"/lib/libuv.so")
|
|
|
|
(string-append "LIBUV_INC="
|
|
|
|
(assoc-ref %build-inputs "libuv")
|
2021-07-03 13:41:58 -04:00
|
|
|
"/include"))))
|
2015-03-20 06:26:23 -04:00
|
|
|
(inputs
|
2021-07-03 13:41:58 -04:00
|
|
|
`(("coreutils" ,coreutils) ; for bindings to "mkdir" and the like
|
|
|
|
("curl" ,curl-ssh)
|
|
|
|
("gfortran" ,gfortran)
|
|
|
|
;; required for libgcc_s.so
|
|
|
|
("gfortran:lib" ,gfortran "lib")
|
|
|
|
("gmp" ,gmp)
|
2015-03-20 06:26:23 -04:00
|
|
|
("lapack" ,lapack)
|
2021-11-23 14:42:26 -05:00
|
|
|
("libgit2" ,libgit2-1.1)
|
2021-07-03 13:41:58 -04:00
|
|
|
("libnghttp2" ,nghttp2 "lib")
|
2020-04-02 05:55:20 -04:00
|
|
|
("libssh2" ,libssh2)
|
2021-07-03 13:41:58 -04:00
|
|
|
("libunwind" ,libunwind-julia)
|
2015-11-30 08:25:53 -05:00
|
|
|
("libuv" ,libuv-julia)
|
2021-07-03 13:41:58 -04:00
|
|
|
("llvm" ,llvm-julia)
|
|
|
|
("mbedtls" ,mbedtls-apache)
|
2015-03-20 06:26:23 -04:00
|
|
|
("mpfr" ,mpfr)
|
2021-07-03 13:41:58 -04:00
|
|
|
("openblas" ,openblas)
|
|
|
|
("openlibm" ,openlibm)
|
|
|
|
("p7zip" ,p7zip)
|
2021-08-18 05:05:05 -04:00
|
|
|
("pcre2" ,pcre2)
|
2021-07-03 13:41:58 -04:00
|
|
|
("suitesparse" ,suitesparse)
|
|
|
|
("utf8proc" ,utf8proc-2.6.1)
|
2015-11-30 08:25:53 -05:00
|
|
|
("wget" ,wget)
|
|
|
|
("which" ,which)
|
2016-07-20 04:36:33 -04:00
|
|
|
("zlib" ,zlib)
|
2020-04-02 05:55:20 -04:00
|
|
|
;; Find dependencies versions here:
|
2021-07-03 13:41:58 -04:00
|
|
|
;; https://raw.githubusercontent.com/JuliaLang/julia/v1.6.0/deps/Versions.make
|
|
|
|
("dsfmt" ,dsfmt)
|
|
|
|
("libwhich" ,libwhich)))
|
2015-03-20 06:26:23 -04:00
|
|
|
(native-inputs
|
2021-08-05 12:41:14 -04:00
|
|
|
`(("openssl" ,openssl)
|
2016-09-24 08:16:21 -04:00
|
|
|
("perl" ,perl)
|
2015-03-20 06:26:23 -04:00
|
|
|
("patchelf" ,patchelf)
|
|
|
|
("pkg-config" ,pkg-config)
|
2019-07-23 17:56:21 -04:00
|
|
|
("python" ,python-2)))
|
2019-08-03 05:19:11 -04:00
|
|
|
(native-search-paths
|
2020-04-07 08:05:29 -04:00
|
|
|
(list (search-path-specification
|
|
|
|
(variable "JULIA_LOAD_PATH")
|
build-system/julia: Enable Julia Pkg to find installed packages.
Julia's built-in package manager (Pkg) looks for packages in
JULIA_DEPOT_PATH/packages/PACKAGENAME/XXXX, where XXXX is a string
encoding package UUID and SHA1 of files. The link-depot phase creates
a link at the correct location to allow Pkg to find packages that were
already installed by Guix.
* guix/build/julia-build-system.scm (link-depot): New phase.
(%package-path): Modified package path from packages/ to loadpath/.
(project.toml->uuid): New procedure, retrive package uuid from TOML file.
(precompile, check): Adjust to the change in paths.
(%standard-phases): Add link-depot phase.
(julia-build): Add julia-package-uuid keyword.
* guix/build-system/julia.scm (julia-build): Also use the
julia-package-uuid keyword.
* gnu/packages/julia-jll.scm (julia-bzip2-jll, julia-cairo-jll,
julia-compilersupportlibraries-jll, julia-expat-jll, julia-ffmpeg-jll,
julia-fontconfig-jll, julia-freetype2-jll, julia-fribidi-jll,
julia-gettext-jll, julia-glib-jll, julia-gr-jll, julia-gumbo-jll,
julia-imagemagick-jll, julia-jllwrappers-jll, julia-jpegturbo-jll,
julia-lame-jll, julia-libass-jll, julia-libfdk-aac-jll,
julia-libffi-jll, julia-libgcrypt-jll, julia-libglvnd-jll,
julia-libgpg-error-jll, juli-libiconv-jll, julia-libmount-jll,
julia-libpng-jll, julia-libsass-jll, julia-libtiff-jll,
julia-libuuid-jll, julia-libvorbis-jll, julia-lzo-jll,
julia-mbedtls-jll, julia-ogg-jll, julia-openspecfun-jll,
julia-openssl-jll, julia-opus-jll, julia-pcre-jll, julia-pixman-jll,
julia-qt5base-jll, julia-wayland-jll, julia-wayland-protocols-jll,
julia-x264-jll, julia-x265-jll, julia-xkbcommon-jll, julia-xml2-jll,
julia-xorg-libpthread-stubs-jll, julia-xorg-libx11-jll,
julia-xorg-libxau-jll, julia-xorg-libxcb-jll, julia-xorg-libxcursor-jll,
julia-xorg-libxdmcp-jll, julia-xorg-libxext-jll,
julia-xorg-libxfixes-jll, julia-xorg-libxi-jll,
julia-xorg-libxinerama-jll, julia-xorg-libxkbfile-jll,
julia-xorg-libxrandr-jll, julia-xorg-libxrender-jll,
julia-xorg-xcb-util-jll, julia-xorg-xcb-util-keysyms-jll,
julia-xorg-xcb-util-renderutil-jll, julia-xorg-xcb-util-wm-jll,
julia-xorg-xkbcomp-jll, julia-xorg-xkeyboard-config-jll,
julia-xorg-xtrans-jll, julia-xslt-jll, julia-zlib-jll, julia-zstd-jll)
[argument]: Adjust the order of the phases to the change in the
julia-build-system.
* gnu/packages/julia-xyz.scm (julia-bufferedstreams, julia-calculus,
julia-dataframes, julia-datavalues, julia-distances, julia-documenter,
julia-dualnumbers, julia-ellipsisnotation, julia-expronicon,
julia-fileio, julia-fixedpointnumbers, julia-functionwrappers,
julia-fuzzycompletions, julia-genericlinearalgebra, julia-genericschur,
julia-geometrybasics, julia-imagemagick, julia-infinity,
julia-matrixfactorizations, julia-media, julia-missings, julia-nnlib,
julia-optimtestproblems, julia-orderedcollections, julia-prettytables,
julia-pycall, julia-quadmath, julia-safetests, julia-stackviews)
[arguments]: Correct paths to reflect change of %package-path modify
order of phases as link-depot needs to run on an unmodified src
directory add package-name-uuid keyword argument to packages without
Project.toml file.
* gnu/packages/julia.scm (julia)[native-search-paths]: Correct paths to
reflect change of %package-path modify order of phases as link-depot
needs to run on an unmodified src directory.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-11-12 09:23:52 -05:00
|
|
|
(files (list "share/julia/loadpath/")))
|
2020-04-02 05:55:20 -04:00
|
|
|
(search-path-specification
|
|
|
|
(variable "JULIA_DEPOT_PATH")
|
|
|
|
(files (list "share/julia/")))))
|
2015-04-07 04:39:25 -04:00
|
|
|
;; Julia is not officially released for ARM and MIPS.
|
|
|
|
;; See https://github.com/JuliaLang/julia/issues/10639
|
2017-07-05 13:26:24 -04:00
|
|
|
(supported-systems '("i686-linux" "x86_64-linux" "aarch64-linux"))
|
2018-04-28 13:55:01 -04:00
|
|
|
(home-page "https://julialang.org/")
|
2015-03-20 06:26:23 -04:00
|
|
|
(synopsis "High-performance dynamic language for technical computing")
|
|
|
|
(description
|
|
|
|
"Julia is a high-level, high-performance dynamic programming language for
|
|
|
|
technical computing, with syntax that is familiar to users of other technical
|
|
|
|
computing environments. It provides a sophisticated compiler, distributed
|
|
|
|
parallel execution, numerical accuracy, and an extensive mathematical function
|
|
|
|
library.")
|
|
|
|
(license license:expat)))
|