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gnu: r-seurat: Update to 4.0.1.
* gnu/packages/cran.scm (r-seurat): Update to 4.0.1. [arguments]: Remove. [propagated-inputs]: Replace r-spatstat with r-spatstat-core and r-spatstat-geom.
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1 changed files with 4 additions and 15 deletions
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@ -26484,27 +26484,15 @@ (define-public r-seuratobject
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(define-public r-seurat
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(define-public r-seurat
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(package
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(package
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(name "r-seurat")
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(name "r-seurat")
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(version "4.0.0")
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(version "4.0.1")
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(source (origin
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(source (origin
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(method url-fetch)
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(method url-fetch)
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(uri (cran-uri "Seurat" version))
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(uri (cran-uri "Seurat" version))
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(sha256
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(sha256
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(base32
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(base32
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"1mp3py00bmzj4541d8ry5sfzkpfzvnl9dpa8n4qhakd13dl30xdn"))))
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"17cmp9mimvykb8ny796dn1zwmvg0pwwjw1zcixyamc5q1lwnxi3p"))))
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(properties `((upstream-name . "Seurat")))
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(properties `((upstream-name . "Seurat")))
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(build-system r-build-system)
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(build-system r-build-system)
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;; This is needed because r-spatstat has been split up and there has
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;; been no new release of Seurat since then.
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(arguments
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`(#:phases
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(modify-phases %standard-phases
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(add-after 'unpack 'fix-spatstat-import
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(lambda _
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(substitute* "NAMESPACE"
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(("importFrom\\(spatstat,markvario\\)")
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"importFrom(spatstat.core,markvario)")
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(("importFrom\\(spatstat,ppp\\)")
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"importFrom(spatstat.geom,ppp)")))))))
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(propagated-inputs
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(propagated-inputs
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`(("r-cluster" ,r-cluster)
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`(("r-cluster" ,r-cluster)
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("r-cowplot" ,r-cowplot)
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("r-cowplot" ,r-cowplot)
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@ -26545,7 +26533,8 @@ (define-public r-seurat
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("r-sctransform" ,r-sctransform)
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("r-sctransform" ,r-sctransform)
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("r-seuratobject" ,r-seuratobject)
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("r-seuratobject" ,r-seuratobject)
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("r-shiny" ,r-shiny)
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("r-shiny" ,r-shiny)
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("r-spatstat" ,r-spatstat)
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("r-spatstat-core" ,r-spatstat-core)
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("r-spatstat-geom" ,r-spatstat-geom)
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("r-tibble" ,r-tibble)
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("r-tibble" ,r-tibble)
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("r-uwot" ,r-uwot)))
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("r-uwot" ,r-uwot)))
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(home-page "http://www.satijalab.org/seurat")
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(home-page "http://www.satijalab.org/seurat")
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