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gnu: r-genomeinfodb: Move to (gnu packages bioconductor).

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* gnu/packages/bioinformatics.scm (r-genomeinfodb): Move from here...
* gnu/packages/bioconductor.scm (r-genomeinfodb): ...to here.
This commit is contained in:
zimoun 2021-03-15 14:01:33 +01:00 committed by Ricardo Wurmus
parent 8d6d75ff39
commit 35b62c044e
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2 changed files with 30 additions and 30 deletions
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30
gnu/packages/bioconductor.scm
View file

@ -1712,6 +1712,36 @@ (define-public r-genefilter
high-throughput sequencing experiments.")
(license license:artistic2.0)))
(define-public r-genomeinfodb
(package
(name "r-genomeinfodb")
(version "1.26.2")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "GenomeInfoDb" version))
(sha256
(base32
"092izc49maxjhf6m4b0qx21ad16dz7bmxy5pysp3vkyhdrfa2f7v"))))
(properties
`((upstream-name . "GenomeInfoDb")))
(build-system r-build-system)
(propagated-inputs
`(("r-biocgenerics" ,r-biocgenerics)
("r-genomeinfodbdata" ,r-genomeinfodbdata)
("r-iranges" ,r-iranges)
("r-rcurl" ,r-rcurl)
("r-s4vectors" ,r-s4vectors)))
(native-inputs
`(("r-knitr" ,r-knitr)))
(home-page "https://bioconductor.org/packages/GenomeInfoDb")
(synopsis "Utilities for manipulating chromosome identifiers")
(description
"This package contains data and functions that define and allow
translation between different chromosome sequence naming conventions (e.g.,
\"chr1\" versus \"1\"), including a function that attempts to place sequence
names in their natural, rather than lexicographic, order.")
(license license:artistic2.0)))
(define-public r-gostats
(package
(name "r-gostats")

30
gnu/packages/bioinformatics.scm
View file

@ -7691,36 +7691,6 @@ (define-public bio-vcf
(home-page "https://github.com/vcflib/bio-vcf")
(license license:expat)))
(define-public r-genomeinfodb
(package
(name "r-genomeinfodb")
(version "1.26.2")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "GenomeInfoDb" version))
(sha256
(base32
"092izc49maxjhf6m4b0qx21ad16dz7bmxy5pysp3vkyhdrfa2f7v"))))
(properties
`((upstream-name . "GenomeInfoDb")))
(build-system r-build-system)
(propagated-inputs
`(("r-biocgenerics" ,r-biocgenerics)
("r-genomeinfodbdata" ,r-genomeinfodbdata)
("r-iranges" ,r-iranges)
("r-rcurl" ,r-rcurl)
("r-s4vectors" ,r-s4vectors)))
(native-inputs
`(("r-knitr" ,r-knitr)))
(home-page "https://bioconductor.org/packages/GenomeInfoDb")
(synopsis "Utilities for manipulating chromosome identifiers")
(description
"This package contains data and functions that define and allow
translation between different chromosome sequence naming conventions (e.g.,
\"chr1\" versus \"1\"), including a function that attempts to place sequence
names in their natural, rather than lexicographic, order.")
(license license:artistic2.0)))
(define-public r-edger
(package
(name "r-edger")