gnu: Add r-msfeatures.

* gnu/packages/bioconductor.scm (r-msfeatures): New variable.
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Ricardo Wurmus 2021-11-04 17:38:09 +00:00
parent 22b568de43
commit 4a92ab58f6
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@ -13100,6 +13100,38 @@ (define-public r-mscoreutils
within the R for Mass Spectrometry packages.")
(license license:artistic2.0)))
(define-public r-msfeatures
(package
(name "r-msfeatures")
(version "1.2.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "MsFeatures" version))
(sha256
(base32 "020ifrijlzdd3qk4bhd9z4knj5d87ildrkl3wcmxvwkvs9rbh8rq"))))
(properties `((upstream-name . "MsFeatures")))
(build-system r-build-system)
(propagated-inputs
`(("r-mscoreutils" ,r-mscoreutils)
("r-protgenerics" ,r-protgenerics)
("r-summarizedexperiment" ,r-summarizedexperiment)))
(native-inputs
`(("r-knitr" ,r-knitr)))
(home-page "https://github.com/RforMassSpectrometry/MsFeatures")
(synopsis "Functionality for mass spectrometry features")
(description
"The MsFeature package defines functionality for Mass Spectrometry
features. This includes functions to group (LC-MS) features based on some of
their properties, such as retention time (coeluting features), or correlation
of signals across samples. This packge hence allows to group features, and
its results can be used as an input for the @code{QFeatures} package which
allows to aggregate abundance levels of features within each group. This
package defines concepts and functions for base and common data types,
implementations for more specific data types are expected to be implemented in
the respective packages (such as e.g. @code{xcms}).")
(license license:artistic2.0)))
(define-public r-biocio
(package
(name "r-biocio")