gnu: Add r-msexperiment.

* gnu/packages/bioconductor.scm (r-msexperiment): New variable.

Change-Id: I707addc076f36bab7f6e96953f5fbd614580825e
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Ricardo Wurmus 2023-11-03 15:40:46 +01:00
parent bbe7ea0d27
commit 4f85beac2d
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@ -1841,6 +1841,40 @@ (define-public r-msdata
files for various search engines.")
(license license:gpl2+)))
(define-public r-msexperiment
(package
(name "r-msexperiment")
(version "1.4.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "MsExperiment" version))
(sha256
(base32 "06m0i60zh3xjqmsz6dpp0il833xzdfj0fm6xbhl7kmicvfrcnyfg"))))
(properties `((upstream-name . "MsExperiment")))
(build-system r-build-system)
(propagated-inputs (list r-iranges
r-protgenerics
r-qfeatures
r-s4vectors
r-spectra
r-summarizedexperiment))
(native-inputs (list r-knitr))
(home-page "https://github.com/RforMassSpectrometry/MsExperiment")
(synopsis "Infrastructure for Mass Spectrometry experiments")
(description
"This package provides infrastructure to store and manage all aspects
related to a complete proteomics or metabolomics mass spectrometry (MS)
experiment. The @code{MsExperiment} package provides light-weight and
flexible containers for MS experiments building on the new MS infrastructure
provided by the Spectra, QFeatures and related packages. Along with raw data
representations, links to original data files and sample annotations,
additional metadata or annotations can also be stored within the
@code{MsExperiment} container. To guarantee maximum flexibility only minimal
constraints are put on the type and content of the data within the
containers.")
(license license:artistic2.0)))
(define-public r-msigdb
(package
(name "r-msigdb")