gnu: Add r-xbseq.

* gnu/packages/bioconductor.scm (r-xbseq): New variable.
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Ricardo Wurmus 2019-03-29 22:42:19 +01:00
parent a6e1eb1a96
commit 50d9177051
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@ -3943,3 +3943,40 @@ (define-public r-roar
sites, comparing two biological conditions, starting from known alternative
sites and alignments obtained from standard RNA-seq experiments.")
(license license:gpl3)))
(define-public r-xbseq
(package
(name "r-xbseq")
(version "1.14.1")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "XBSeq" version))
(sha256
(base32
"0na0jiqfy40bzl243gqc2214k4hibv6v4ndiqwq0c5f78cyr6lph"))))
(properties `((upstream-name . "XBSeq")))
(build-system r-build-system)
(propagated-inputs
`(("r-biobase" ,r-biobase)
("r-deseq2" ,r-deseq2)
("r-dplyr" ,r-dplyr)
("r-ggplot2" ,r-ggplot2)
("r-locfit" ,r-locfit)
("r-magrittr" ,r-magrittr)
("r-matrixstats" ,r-matrixstats)
("r-pracma" ,r-pracma)
("r-roar" ,r-roar)))
(home-page "https://github.com/Liuy12/XBSeq")
(synopsis "Test for differential expression for RNA-seq data")
(description
"XBSeq is a novel algorithm for testing RNA-seq @dfn{differential
expression} (DE), where a statistical model was established based on the
assumption that observed signals are the convolution of true expression
signals and sequencing noises. The mapped reads in non-exonic regions are
considered as sequencing noises, which follows a Poisson distribution. Given
measurable observed signal and background noise from RNA-seq data, true
expression signals, assuming governed by the negative binomial distribution,
can be delineated and thus the accurate detection of differential expressed
genes.")
(license license:gpl3+)))