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gnu: r-bsgenome: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-bsgenome): Move from here... * gnu/packages/bioconductor.scm (r-bsgenome): ...to here.
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@ -4,7 +4,7 @@
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;;; Copyright © 2016 Pjotr Prins <pjotr.guix@thebird.nl>
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;;; Copyright © 2016 Pjotr Prins <pjotr.guix@thebird.nl>
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;;; Copyright © 2016 Ben Woodcroft <donttrustben@gmail.com>
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;;; Copyright © 2016 Ben Woodcroft <donttrustben@gmail.com>
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;;; Copyright © 2017 Efraim Flashner <efraim@flashner.co.il>
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;;; Copyright © 2017 Efraim Flashner <efraim@flashner.co.il>
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;;; Copyright © 2017, 2018, 2019 Tobias Geerinckx-Rice <me@tobias.gr>
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;;; Copyright © 2017, 2018, 2019, 2020 Tobias Geerinckx-Rice <me@tobias.gr>
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;;; Copyright © 2019, 2020, 2021 Simon Tournier <zimon.toutoune@gmail.com>
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;;; Copyright © 2019, 2020, 2021 Simon Tournier <zimon.toutoune@gmail.com>
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;;; Copyright © 2020 Peter Lo <peterloleungyau@gmail.com>
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;;; Copyright © 2020 Peter Lo <peterloleungyau@gmail.com>
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;;; Copyright © 2020, 2021 Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de>
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;;; Copyright © 2020, 2021 Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de>
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@ -2080,6 +2080,37 @@ (define-public r-biostrings
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biological sequences or sets of sequences.")
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biological sequences or sets of sequences.")
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(license license:artistic2.0)))
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(license license:artistic2.0)))
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(define-public r-bsgenome
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(package
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(name "r-bsgenome")
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(version "1.58.0")
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(source (origin
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(method url-fetch)
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(uri (bioconductor-uri "BSgenome" version))
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(sha256
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(base32
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"1gbvmxr6r57smgvhqgwspbcnwyk4hsfkxkpzzcs6470q03zfb4wq"))))
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(properties
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`((upstream-name . "BSgenome")))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-biocgenerics" ,r-biocgenerics)
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("r-biostrings" ,r-biostrings)
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("r-genomeinfodb" ,r-genomeinfodb)
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("r-genomicranges" ,r-genomicranges)
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("r-iranges" ,r-iranges)
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("r-matrixstats" ,r-matrixstats)
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("r-rsamtools" ,r-rsamtools)
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("r-rtracklayer" ,r-rtracklayer)
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("r-s4vectors" ,r-s4vectors)
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("r-xvector" ,r-xvector)))
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(home-page "https://bioconductor.org/packages/BSgenome")
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(synopsis "Infrastructure for Biostrings-based genome data packages")
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(description
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"This package provides infrastructure shared by all Biostrings-based
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genome data packages and support for efficient SNP representation.")
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(license license:artistic2.0)))
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(define-public r-category
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(define-public r-category
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(package
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(package
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(name "r-category")
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(name "r-category")
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@ -7976,37 +7976,6 @@ (define-public r-go-db
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information about the latest version of the Gene Ontologies.")
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information about the latest version of the Gene Ontologies.")
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(license license:artistic2.0)))
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(license license:artistic2.0)))
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(define-public r-bsgenome
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(package
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(name "r-bsgenome")
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(version "1.58.0")
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(source (origin
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(method url-fetch)
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(uri (bioconductor-uri "BSgenome" version))
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(sha256
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(base32
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"1gbvmxr6r57smgvhqgwspbcnwyk4hsfkxkpzzcs6470q03zfb4wq"))))
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(properties
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`((upstream-name . "BSgenome")))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-biocgenerics" ,r-biocgenerics)
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("r-biostrings" ,r-biostrings)
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("r-genomeinfodb" ,r-genomeinfodb)
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("r-genomicranges" ,r-genomicranges)
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("r-iranges" ,r-iranges)
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("r-matrixstats" ,r-matrixstats)
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("r-rsamtools" ,r-rsamtools)
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("r-rtracklayer" ,r-rtracklayer)
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("r-s4vectors" ,r-s4vectors)
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("r-xvector" ,r-xvector)))
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(home-page "https://bioconductor.org/packages/BSgenome")
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(synopsis "Infrastructure for Biostrings-based genome data packages")
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(description
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"This package provides infrastructure shared by all Biostrings-based
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genome data packages and support for efficient SNP representation.")
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(license license:artistic2.0)))
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(define-public r-impute
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(define-public r-impute
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(package
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(package
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(name "r-impute")
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(name "r-impute")
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