gnu: Add r-raggedexperiment.

* gnu/packages/bioconductor.scm (r-raggedexperiment): New variable.
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Ricardo Wurmus 2023-07-19 15:03:01 +02:00
parent 9d45783d77
commit 5a20a14c3e
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@ -7363,6 +7363,39 @@ (define-public r-hpar
the Human Protein Atlas project.") the Human Protein Atlas project.")
(license license:artistic2.0))) (license license:artistic2.0)))
(define-public r-raggedexperiment
(package
(name "r-raggedexperiment")
(version "1.24.0")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "RaggedExperiment" version))
(sha256
(base32
"1xs7dz5mkh9zs078g2a0izij8vxrwhzh7gyjglp057gicsca0hal"))))
(properties `((upstream-name . "RaggedExperiment")))
(build-system r-build-system)
(propagated-inputs (list r-biocgenerics
r-genomeinfodb
r-genomicranges
r-iranges
r-matrix
r-matrixgenerics
r-s4vectors
r-summarizedexperiment))
(native-inputs (list r-knitr))
(home-page "https://bioconductor.org/packages/RaggedExperiment")
(synopsis "Representation of sparse experiments and assays across samples")
(description
"This package provides a flexible representation of copy number,
mutation, and other data that fit into the ragged array schema for genomic
location data. The basic representation of such data provides a rectangular
flat table interface to the user with range information in the rows and
samples/specimen in the columns. The @code{RaggedExperiment} class derives
from a @code{GRangesList} representation and provides a semblance of a
rectangular dataset.")
(license license:artistic2.0)))
(define-public r-rhtslib (define-public r-rhtslib
(package (package
(name "r-rhtslib") (name "r-rhtslib")