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gnu: Add r-battenberg.

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* gnu/packages/bioinformatics.scm (r-battenberg): New variable.
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Lars-Dominik Braun 2021-07-21 11:48:07 +02:00
parent ed636babfa
commit 73830b5da3
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gnu/packages/bioinformatics.scm
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@ -14689,3 +14689,33 @@ (define-public r-ascat
Number Analysis of Tumors} R package that can be used to infer tumour purity,
ploidy and allele-specific copy number profiles.")
(license license:gpl3)))
(define-public r-battenberg
(package
(name "r-battenberg")
(version "2.2.9")
(source (origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/Wedge-lab/battenberg.git")
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
(base32
"0nmcq4c7y5g8h8lxsq9vadz9bj4qgqn118alip520ny6czaxki4h"))))
(build-system r-build-system)
(propagated-inputs
`(("r-devtools" ,r-devtools)
("r-readr" ,r-readr)
("r-doparallel" ,r-doparallel)
("r-ggplot2" ,r-ggplot2)
("r-rcolorbrewer" ,r-rcolorbrewer)
("r-gridextra" ,r-gridextra)
("r-gtools" ,r-gtools)
("r-ascat" ,r-ascat)))
(home-page "https://github.com/Wedge-lab/battenberg")
(synopsis "Subclonal copy number estimation in R")
(description "This package contains the Battenberg R package for subclonal
copy number estimation, as described by
@url{doi:10.1016/j.cell.2012.04.023,Nik-Zainal et al.}")
(license license:gpl3)))