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gnu: Add r-bigmemoryextras.
* gnu/packages/bioconductor.scm (r-bigmemoryextras): New variable.
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@ -6783,3 +6783,35 @@ (define-public r-biggr
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analysis} (FBA) and the sampling of feasible flux distributions. Metabolic
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networks and estimated fluxes can be visualized with hypergraphs.")
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(license license:gpl3+)))
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(define-public r-bigmemoryextras
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(package
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(name "r-bigmemoryextras")
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(version "1.34.0")
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(source
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(origin
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(method url-fetch)
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(uri (bioconductor-uri "bigmemoryExtras" version))
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(sha256
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(base32
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"17dk7c44ikphcrpi8hnxyvlmj30qmj098kc0ihfi69bp9rw1cibq"))))
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(properties
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`((upstream-name . "bigmemoryExtras")))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-bigmemory" ,r-bigmemory)))
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(home-page "https://github.com/phaverty/bigmemoryExtras")
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(synopsis "Extension of the bigmemory package")
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(description
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"This package defines a @code{BigMatrix} @code{ReferenceClass} which adds
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safety and convenience features to the @code{filebacked.big.matrix} class from
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the @code{bigmemory} package. @code{BigMatrix} protects against segfaults by
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monitoring and gracefully restoring the connection to on-disk data and it also
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protects against accidental data modification with a filesystem-based
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permissions system. Utilities are provided for using @code{BigMatrix}-derived
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classes as @code{assayData} matrices within the @code{Biobase} package's
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@code{eSet} family of classes. @code{BigMatrix} provides some optimizations
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related to attaching to, and indexing into, file-backed matrices with
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dimnames. Additionally, the package provides a @code{BigMatrixFactor} class,
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a file-backed matrix with factor properties.")
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(license license:artistic2.0)))
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