gnu: Add r-adamgui.

* gnu/packages/bioconductor.scm (r-adamgui): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
This commit is contained in:
Mădălin Ionel Patrașcu 2022-04-26 12:19:54 +02:00 committed by Ricardo Wurmus
parent 1c3c00a8a1
commit 936f23a654
No known key found for this signature in database
GPG key ID: 197A5888235FACAC

View file

@ -1616,6 +1616,54 @@ (define-public r-adam
functionally associated genes} (GFAG).")
(license license:gpl2+)))
(define-public r-adamgui
(package
(name "r-adamgui")
(version "1.10.0")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "ADAMgui" version))
(sha256
(base32
"0n06bb9djigha0249lxx84pn9q0xiryxbv25qsc3p2h46iaxi3wq"))))
(properties `((upstream-name . "ADAMgui")))
(build-system r-build-system)
(propagated-inputs
(list r-adam
r-colorramps
r-data-table
r-dplyr
r-dt
r-ggplot2
r-ggpubr
r-ggrepel
r-ggsignif
r-go-db
r-gridextra
r-knitr
r-rcolorbrewer
r-reshape2
r-shiny
r-shinyjs
r-stringi
r-stringr
r-testthat
r-varhandle))
(native-inputs (list r-knitr))
(home-page "https://bioconductor.org/packages/ADAMgui/")
(synopsis "GUI for gene activity and diversity analysis")
(description
"This package @code{ADAMgui} is a @dfn{graphical user interface} (GUI)
for the @code{ADAM} package. The @code{ADAMgui} package provides two
shiny-based applications that allows the user to study the output of the
@code{ADAM} package files through different plots. It's possible, for
example, to choose a specific @dfn{group of functionally associated
genes} (GFAG) and observe the gene expression behavior with the plots created
with the @code{GFAGtargetUi} function. Features such as differential
expression and fold change can be easily seen with aid of the plots made with
the @code{GFAGpathUi} function.")
(license license:gpl2+)))
(define-public r-aneufinder
(package
(name "r-aneufinder")