gnu: Add python-openturns.

* gnu/packages/statistics.scm (python-openturns): New variable.
This commit is contained in:
Vinicius Monego 2023-07-29 21:38:27 -03:00
parent 9c4e8a868d
commit 9f41aa021f
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@ -43,6 +43,7 @@ (define-module (gnu packages statistics)
#:use-module (guix git-download)
#:use-module (guix utils)
#:use-module (guix build-system ant)
#:use-module (guix build-system cmake)
#:use-module (guix build-system emacs)
#:use-module (guix build-system gnu)
#:use-module (guix build-system r)
@ -54,12 +55,15 @@ (define-module (gnu packages statistics)
#:use-module (gnu packages algebra)
#:use-module (gnu packages autotools)
#:use-module (gnu packages bash)
#:use-module (gnu packages bison)
#:use-module (gnu packages boost)
#:use-module (gnu packages check)
#:use-module (gnu packages compression)
#:use-module (gnu packages cran)
#:use-module (gnu packages curl)
#:use-module (gnu packages emacs)
#:use-module (gnu packages emacs-xyz)
#:use-module (gnu packages flex)
#:use-module (gnu packages fontutils)
#:use-module (gnu packages gcc)
#:use-module (gnu packages gtk)
@ -90,6 +94,7 @@ (define-module (gnu packages statistics)
#:use-module (gnu packages sphinx)
#:use-module (gnu packages ssh)
#:use-module (gnu packages swig)
#:use-module (gnu packages tbb)
#:use-module (gnu packages tcl)
#:use-module (gnu packages tex)
#:use-module (gnu packages texinfo)
@ -2345,6 +2350,94 @@ (define-public python-statsmodels
inference for statistical models.")
(license license:bsd-3)))
(define-public python-openturns
(package
(name "python-openturns")
(version "1.21")
(source
(origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/openturns/openturns")
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
(base32 "05lbx8npvvk7jyakvfpgi9ggdp6cnzwv2hjmjrkji2s42axv0q6d"))))
(build-system cmake-build-system)
(arguments
(list
#:phases
#~(modify-phases %standard-phases
(delete 'check)
;; This is a Python package which is fully managed by CMake. In
;; cmake-build-system the check phase runs before install, but the
;; Python modules required for testing are only installed in the
;; install phase. Move check to after the install phase.
(add-after 'install 'check
(lambda* (#:key tests? #:allow-other-keys)
(when tests?
(invoke "ctest" "--exclude-regex"
;; XXX: Cpp tests fail in 'No such file or directory',
;; skip for now and only run the Python tests.
;; TODO: To pass the Python tests below, Ipopt must be
;; built with MUMPS support, but simply adding mumps
;; to the inputs doesn't work for it to be found,
;; possibly because MUMPS doesn't generate a .pc file.
(string-join
(list "^cpp"
"pyinstallcheck_Bonmin_std"
"pyinstallcheck_Bonmin_4dsoo"
"pyinstallcheck_Bonmin_MIT15"
"pyinstallcheck_Bonmin_swiler2014"
"pyinstallcheck_Ipopt_std"
"pyinstallcheck_example_plot_optimization_bonmin"
"pyinstallcheck_coupling_tools")
"|"))))))))
(native-inputs
(list bison
dvisvgm
flex
python-numpydoc
python-sphinx
;; python-sphinx-gallery ;; Currently broken
swig))
(inputs
(list openblas ; the only required dependency
;; The dependecies below are all optional.
bonmin
boost
cbc ;; Maybe this should be propagated by Bonmin?
ceres
cminpack
dlib
hdf5
hmat
ipopt
libxml2
mpc
mpfr
nlopt
pagmo
primesieve
python-wrapper
spectra
tbb))
(propagated-inputs
(list python-chaospy
python-dill
python-matplotlib
python-numpy
python-pandas
python-scipy))
(home-page "https://openturns.github.io/www/")
(synopsis "Uncertainty treatment library")
(description
"OpenTURNS is a scientific C++ and Python library including an internal
data model and algorithms dedicated to the treatment of uncertainties. The
main goal of this library is giving to specific applications all the
functionalities needed to treat uncertainties in studies.")
(license license:lgpl3+)))
(define-public r-coda
(package
(name "r-coda")