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gnu: Add python-openturns.
* gnu/packages/statistics.scm (python-openturns): New variable.
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@ -43,6 +43,7 @@ (define-module (gnu packages statistics)
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#:use-module (guix git-download)
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#:use-module (guix git-download)
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#:use-module (guix utils)
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#:use-module (guix utils)
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#:use-module (guix build-system ant)
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#:use-module (guix build-system ant)
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#:use-module (guix build-system cmake)
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#:use-module (guix build-system emacs)
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#:use-module (guix build-system emacs)
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#:use-module (guix build-system gnu)
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#:use-module (guix build-system gnu)
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#:use-module (guix build-system r)
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#:use-module (guix build-system r)
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@ -54,12 +55,15 @@ (define-module (gnu packages statistics)
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#:use-module (gnu packages algebra)
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#:use-module (gnu packages algebra)
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#:use-module (gnu packages autotools)
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#:use-module (gnu packages autotools)
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#:use-module (gnu packages bash)
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#:use-module (gnu packages bash)
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#:use-module (gnu packages bison)
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#:use-module (gnu packages boost)
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#:use-module (gnu packages check)
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#:use-module (gnu packages check)
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#:use-module (gnu packages compression)
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#:use-module (gnu packages compression)
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#:use-module (gnu packages cran)
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#:use-module (gnu packages cran)
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#:use-module (gnu packages curl)
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#:use-module (gnu packages curl)
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#:use-module (gnu packages emacs)
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#:use-module (gnu packages emacs)
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#:use-module (gnu packages emacs-xyz)
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#:use-module (gnu packages emacs-xyz)
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#:use-module (gnu packages flex)
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#:use-module (gnu packages fontutils)
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#:use-module (gnu packages fontutils)
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#:use-module (gnu packages gcc)
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#:use-module (gnu packages gcc)
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#:use-module (gnu packages gtk)
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#:use-module (gnu packages gtk)
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@ -90,6 +94,7 @@ (define-module (gnu packages statistics)
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#:use-module (gnu packages sphinx)
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#:use-module (gnu packages sphinx)
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#:use-module (gnu packages ssh)
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#:use-module (gnu packages ssh)
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#:use-module (gnu packages swig)
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#:use-module (gnu packages swig)
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#:use-module (gnu packages tbb)
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#:use-module (gnu packages tcl)
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#:use-module (gnu packages tcl)
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#:use-module (gnu packages tex)
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#:use-module (gnu packages tex)
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#:use-module (gnu packages texinfo)
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#:use-module (gnu packages texinfo)
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@ -2345,6 +2350,94 @@ (define-public python-statsmodels
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inference for statistical models.")
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inference for statistical models.")
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(license license:bsd-3)))
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(license license:bsd-3)))
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(define-public python-openturns
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(package
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(name "python-openturns")
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(version "1.21")
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(source
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(origin
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(method git-fetch)
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(uri (git-reference
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(url "https://github.com/openturns/openturns")
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(commit (string-append "v" version))))
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(file-name (git-file-name name version))
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(sha256
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(base32 "05lbx8npvvk7jyakvfpgi9ggdp6cnzwv2hjmjrkji2s42axv0q6d"))))
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(build-system cmake-build-system)
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(arguments
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(list
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#:phases
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#~(modify-phases %standard-phases
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(delete 'check)
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;; This is a Python package which is fully managed by CMake. In
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;; cmake-build-system the check phase runs before install, but the
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;; Python modules required for testing are only installed in the
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;; install phase. Move check to after the install phase.
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(add-after 'install 'check
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(lambda* (#:key tests? #:allow-other-keys)
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(when tests?
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(invoke "ctest" "--exclude-regex"
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;; XXX: Cpp tests fail in 'No such file or directory',
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;; skip for now and only run the Python tests.
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;; TODO: To pass the Python tests below, Ipopt must be
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;; built with MUMPS support, but simply adding mumps
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;; to the inputs doesn't work for it to be found,
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;; possibly because MUMPS doesn't generate a .pc file.
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(string-join
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(list "^cpp"
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"pyinstallcheck_Bonmin_std"
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"pyinstallcheck_Bonmin_4dsoo"
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"pyinstallcheck_Bonmin_MIT15"
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"pyinstallcheck_Bonmin_swiler2014"
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"pyinstallcheck_Ipopt_std"
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"pyinstallcheck_example_plot_optimization_bonmin"
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"pyinstallcheck_coupling_tools")
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"|"))))))))
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(native-inputs
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(list bison
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dvisvgm
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flex
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python-numpydoc
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python-sphinx
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;; python-sphinx-gallery ;; Currently broken
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swig))
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(inputs
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(list openblas ; the only required dependency
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;; The dependecies below are all optional.
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bonmin
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boost
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cbc ;; Maybe this should be propagated by Bonmin?
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ceres
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cminpack
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dlib
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hdf5
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hmat
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ipopt
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libxml2
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mpc
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mpfr
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nlopt
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pagmo
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primesieve
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python-wrapper
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spectra
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tbb))
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(propagated-inputs
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(list python-chaospy
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python-dill
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python-matplotlib
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python-numpy
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python-pandas
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python-scipy))
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(home-page "https://openturns.github.io/www/")
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(synopsis "Uncertainty treatment library")
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(description
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"OpenTURNS is a scientific C++ and Python library including an internal
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data model and algorithms dedicated to the treatment of uncertainties. The
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main goal of this library is giving to specific applications all the
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functionalities needed to treat uncertainties in studies.")
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(license license:lgpl3+)))
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(define-public r-coda
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(define-public r-coda
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(package
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(package
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(name "r-coda")
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(name "r-coda")
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