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gnu: Add r-demuxmix.
* gnu/packages/bioinformatics.scm (r-demuxmix): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
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@ -9708,6 +9708,37 @@ (define-public r-demultiplex2
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read counts derived from the physical mechanism of tag cross-contamination.")
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(license license:cc0))))
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(define-public r-demuxmix
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(let ((commit "09a7918ca6e0cd23e6bbaed2b97388bc499e248e")
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(revision "1"))
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(package
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(name "r-demuxmix")
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(version (git-version "1.1.1" revision commit))
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(source (origin
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(method git-fetch)
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(uri (git-reference
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(url "https://github.com/huklein/demuxmix")
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(commit commit)))
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(file-name (git-file-name name version))
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(sha256
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(base32
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"03kfnns7m2447jsc3xplyv9qx8hvvdjmii7j837g3bb6smyxss96"))))
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(properties `((upstream-name . "demuxmix")))
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(build-system r-build-system)
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(propagated-inputs (list r-ggplot2 r-gridextra r-mass r-matrix))
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(native-inputs (list r-knitr))
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(home-page "https://github.com/huklein/demuxmix")
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(synopsis
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"Demultiplexing oligo-barcoded scRNA-seq data using regression mixture models")
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(description
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"This package is used for demultiplexing single-cell sequencing
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experiments of pooled cells. These cells are labeled with barcode
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oligonucleotides. The package implements methods to fit regression mixture
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models for a probabilistic classification of cells, including multiplet
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detection. Demultiplexing error rates can be estimated, and methods for
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quality control are provided.")
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(license license:artistic2.0))))
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(define-public gdc-client
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(package
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(name "gdc-client")
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