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gnu: r-mutationalpatterns: Move to (gnu packages bioconductor).

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* gnu/packages/bioinformatics.scm (r-mutationalpatterns): Move from here...
* gnu/packages/bioconductor.scm (r-mutationalpatterns): ...to here.
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zimoun 2021-05-21 22:26:14 +02:00 committed by Ricardo Wurmus
parent 7360dea624
commit bf8f502956
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2 changed files with 45 additions and 45 deletions
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45
gnu/packages/bioconductor.scm
View file

@ -3218,6 +3218,51 @@ (define-public r-motifrg
throughput genetic sequencing data sets using regression methods.")
(license license:artistic2.0)))
(define-public r-mutationalpatterns
(package
(name "r-mutationalpatterns")
(version "3.0.1")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "MutationalPatterns" version))
(sha256
(base32
"1988kjjgq8af0hj7chhpxi88717wwmzs9qgrwapjh0hm2hjwhn35"))))
(build-system r-build-system)
(native-inputs
`(("r-knitr" ,r-knitr)))
(propagated-inputs
`(("r-biocgenerics" ,r-biocgenerics)
("r-biostrings" ,r-biostrings)
("r-bsgenome" ,r-bsgenome)
;; These two packages are suggested packages
("r-bsgenome-hsapiens-1000g" ,r-bsgenome-hsapiens-1000genomes-hs37d5)
("r-bsgenome-hsapiens-ucsc-hg19" ,r-bsgenome-hsapiens-ucsc-hg19)
("r-cowplot" ,r-cowplot)
("r-dplyr" ,r-dplyr)
("r-genomeinfodb" ,r-genomeinfodb)
("r-genomicranges" ,r-genomicranges)
("r-ggalluvial" ,r-ggalluvial)
("r-ggdendro" ,r-ggdendro)
("r-ggplot2" ,r-ggplot2)
("r-iranges" ,r-iranges)
("r-magrittr" ,r-magrittr)
("r-nmf" ,r-nmf)
("r-pracma" ,r-pracma)
("r-purrr" ,r-purrr)
("r-s4vectors" ,r-s4vectors)
("r-stringr" ,r-stringr)
("r-tibble" ,r-tibble)
("r-tidyr" ,r-tidyr)
("r-variantannotation" ,r-variantannotation)))
(home-page "https://bioconductor.org/packages/MutationalPatterns/")
(synopsis "Extract and visualize mutational patterns in genomic data")
(description "This package provides an extensive toolset for the
characterization and visualization of a wide range of mutational patterns
in SNV base substitution data.")
(license license:expat)))
(define-public r-msnbase
(package
(name "r-msnbase")

45
gnu/packages/bioinformatics.scm
View file

@ -8097,51 +8097,6 @@ (define-public rcas-web
@dfn{RNA-centric annotation system} (RCAS).")
(license license:agpl3+)))
(define-public r-mutationalpatterns
(package
(name "r-mutationalpatterns")
(version "3.0.1")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "MutationalPatterns" version))
(sha256
(base32
"1988kjjgq8af0hj7chhpxi88717wwmzs9qgrwapjh0hm2hjwhn35"))))
(build-system r-build-system)
(native-inputs
`(("r-knitr" ,r-knitr)))
(propagated-inputs
`(("r-biocgenerics" ,r-biocgenerics)
("r-biostrings" ,r-biostrings)
("r-bsgenome" ,r-bsgenome)
;; These two packages are suggested packages
("r-bsgenome-hsapiens-1000g" ,r-bsgenome-hsapiens-1000genomes-hs37d5)
("r-bsgenome-hsapiens-ucsc-hg19" ,r-bsgenome-hsapiens-ucsc-hg19)
("r-cowplot" ,r-cowplot)
("r-dplyr" ,r-dplyr)
("r-genomeinfodb" ,r-genomeinfodb)
("r-genomicranges" ,r-genomicranges)
("r-ggalluvial" ,r-ggalluvial)
("r-ggdendro" ,r-ggdendro)
("r-ggplot2" ,r-ggplot2)
("r-iranges" ,r-iranges)
("r-magrittr" ,r-magrittr)
("r-nmf" ,r-nmf)
("r-pracma" ,r-pracma)
("r-purrr" ,r-purrr)
("r-s4vectors" ,r-s4vectors)
("r-stringr" ,r-stringr)
("r-tibble" ,r-tibble)
("r-tidyr" ,r-tidyr)
("r-variantannotation" ,r-variantannotation)))
(home-page "https://bioconductor.org/packages/MutationalPatterns/")
(synopsis "Extract and visualize mutational patterns in genomic data")
(description "This package provides an extensive toolset for the
characterization and visualization of a wide range of mutational patterns
in SNV base substitution data.")
(license license:expat)))
(define-public r-chipkernels
(let ((commit "c9cfcacb626b1221094fb3490ea7bac0fd625372")
(revision "1"))