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gnu: r-methylkit: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-methylkit): Move from here... * gnu/packages/bioconductor.scm (r-methylkit): ...to here.
This commit is contained in:
zimoun
Ricardo Wurmus
parent
7ab44aeed6
commit
c294c0d782
2 changed files with 47 additions and 47 deletions
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@ -3307,6 +3307,53 @@ (define-public r-limma
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different technologies, including microarrays, RNA-seq, and quantitative PCR.")
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different technologies, including microarrays, RNA-seq, and quantitative PCR.")
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(license license:gpl2+)))
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(license license:gpl2+)))
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(define-public r-methylkit
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(package
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(name "r-methylkit")
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(version "1.16.1")
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(source (origin
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(method url-fetch)
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(uri (bioconductor-uri "methylKit" version))
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(sha256
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(base32
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"1c9b11gfh3cc37iwym9rgsba3mh2xkp78a1gvnjqhzlkiz667mn3"))))
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(properties `((upstream-name . "methylKit")))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-data-table" ,r-data-table)
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("r-emdbook" ,r-emdbook)
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("r-fastseg" ,r-fastseg)
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("r-genomeinfodb" ,r-genomeinfodb)
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("r-genomicranges" ,r-genomicranges)
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("r-gtools" ,r-gtools)
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("r-iranges" ,r-iranges)
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("r-kernsmooth" ,r-kernsmooth)
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("r-limma" ,r-limma)
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("r-mclust" ,r-mclust)
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("r-mgcv" ,r-mgcv)
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("r-qvalue" ,r-qvalue)
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("r-r-utils" ,r-r-utils)
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("r-rcpp" ,r-rcpp)
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("r-rhtslib" ,r-rhtslib)
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("r-rsamtools" ,r-rsamtools)
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("r-rtracklayer" ,r-rtracklayer)
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("r-s4vectors" ,r-s4vectors)
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("r-zlibbioc" ,r-zlibbioc)))
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(native-inputs
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`(("r-knitr" ,r-knitr))) ; for vignettes
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(home-page "https://github.com/al2na/methylKit")
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(synopsis
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"DNA methylation analysis from high-throughput bisulfite sequencing results")
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(description
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"MethylKit is an R package for DNA methylation analysis and annotation
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from high-throughput bisulfite sequencing. The package is designed to deal
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with sequencing data from @dfn{Reduced representation bisulfite
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sequencing} (RRBS) and its variants, but also target-capture methods and whole
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genome bisulfite sequencing. It also has functions to analyze base-pair
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resolution 5hmC data from experimental protocols such as oxBS-Seq and
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TAB-Seq.")
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(license license:artistic2.0)))
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(define-public r-motifrg
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(define-public r-motifrg
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(package
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(package
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(name "r-motifrg")
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(name "r-motifrg")
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@ -8486,53 +8486,6 @@ (define-public variant-tools
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manipulate and analyze genetic variants.")
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manipulate and analyze genetic variants.")
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(license license:gpl3+)))
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(license license:gpl3+)))
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(define-public r-methylkit
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(package
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(name "r-methylkit")
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(version "1.16.1")
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(source (origin
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(method url-fetch)
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(uri (bioconductor-uri "methylKit" version))
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(sha256
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(base32
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"1c9b11gfh3cc37iwym9rgsba3mh2xkp78a1gvnjqhzlkiz667mn3"))))
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(properties `((upstream-name . "methylKit")))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-data-table" ,r-data-table)
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("r-emdbook" ,r-emdbook)
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("r-fastseg" ,r-fastseg)
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("r-genomeinfodb" ,r-genomeinfodb)
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("r-genomicranges" ,r-genomicranges)
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("r-gtools" ,r-gtools)
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("r-iranges" ,r-iranges)
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("r-kernsmooth" ,r-kernsmooth)
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("r-limma" ,r-limma)
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("r-mclust" ,r-mclust)
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("r-mgcv" ,r-mgcv)
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("r-qvalue" ,r-qvalue)
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("r-r-utils" ,r-r-utils)
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("r-rcpp" ,r-rcpp)
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("r-rhtslib" ,r-rhtslib)
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("r-rsamtools" ,r-rsamtools)
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("r-rtracklayer" ,r-rtracklayer)
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("r-s4vectors" ,r-s4vectors)
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("r-zlibbioc" ,r-zlibbioc)))
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(native-inputs
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`(("r-knitr" ,r-knitr))) ; for vignettes
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(home-page "https://github.com/al2na/methylKit")
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(synopsis
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"DNA methylation analysis from high-throughput bisulfite sequencing results")
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(description
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"MethylKit is an R package for DNA methylation analysis and annotation
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from high-throughput bisulfite sequencing. The package is designed to deal
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with sequencing data from @dfn{Reduced representation bisulfite
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sequencing} (RRBS) and its variants, but also target-capture methods and whole
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genome bisulfite sequencing. It also has functions to analyze base-pair
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resolution 5hmC data from experimental protocols such as oxBS-Seq and
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TAB-Seq.")
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(license license:artistic2.0)))
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(define-public r-raremetals2
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(define-public r-raremetals2
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(package
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(package
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(name "r-raremetals2")
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(name "r-raremetals2")
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