mirror of
https://git.in.rschanz.org/ryan77627/guix.git
synced 2024-11-16 19:57:39 -05:00
gnu: r-mzr: Update to 2.30.0.
* gnu/packages/bioconductor.scm (r-mzr): Update to 2.30.0. [propagated-inputs]: Remove r-zlibbioc. [inputs]: Replace boost-for-mysql with boost.
This commit is contained in:
parent
3eb763c2ba
commit
d1134b61fd
1 changed files with 6 additions and 12 deletions
|
@ -4497,19 +4497,17 @@ (define-public r-mzid
|
|||
(define-public r-mzr
|
||||
(package
|
||||
(name "r-mzr")
|
||||
(version "2.28.0")
|
||||
(version "2.30.0")
|
||||
(source
|
||||
(origin
|
||||
(method url-fetch)
|
||||
(uri (bioconductor-uri "mzR" version))
|
||||
(sha256
|
||||
(base32
|
||||
"1azq0wjjy6n5xc721gjz6afm43ajz15b4p34vgsdjzwg9qn1vrs1"))
|
||||
"1dqa03hb42kbqfg15ksijdkyf9pr54gcl3in4mzjkld5sdi8ncds"))
|
||||
(modules '((guix build utils)))
|
||||
(snippet
|
||||
'(begin
|
||||
(delete-file-recursively "src/boost")
|
||||
#t))))
|
||||
'(delete-file-recursively "src/boost"))))
|
||||
(properties `((upstream-name . "mzR")))
|
||||
(build-system r-build-system)
|
||||
(arguments
|
||||
|
@ -4523,12 +4521,9 @@ (define-public r-mzr
|
|||
(("\\ARCH_OBJS=" line)
|
||||
(string-append line
|
||||
"\nBOOST_LIBS=-lboost_system -lboost_regex \
|
||||
-lboost_iostreams -lboost_thread -lboost_filesystem -lboost_chrono\n")))
|
||||
#t)))))
|
||||
-lboost_iostreams -lboost_thread -lboost_filesystem -lboost_chrono\n"))))))))
|
||||
(inputs
|
||||
(list ;; Our default boost package won't work here, unfortunately, even with
|
||||
;; mzR version 2.28.0.
|
||||
boost-for-mysql ; use this instead of the bundled boost sources
|
||||
(list boost ; use this instead of the bundled boost sources
|
||||
zlib))
|
||||
(propagated-inputs
|
||||
(list r-biobase
|
||||
|
@ -4536,8 +4531,7 @@ (define-public r-mzr
|
|||
r-ncdf4
|
||||
r-protgenerics
|
||||
r-rcpp
|
||||
r-rhdf5lib
|
||||
r-zlibbioc))
|
||||
r-rhdf5lib))
|
||||
(native-inputs
|
||||
(list r-knitr))
|
||||
(home-page "https://github.com/sneumann/mzR/")
|
||||
|
|
Loading…
Reference in a new issue