ryan77627/guix
1
0
Fork 0
mirror of https://git.in.rschanz.org/ryan77627/guix.git synced 2024-12-24 21:38:07 -05:00
Code Issues Projects Releases Packages Wiki Activity Actions

gnu: Add r-tximport.

Browse source
This commit is contained in:
Raoul Jean Pierre Bonnal 2016-12-27 22:11:28 +01:00 committed by Ricardo Wurmus
parent f5c8cf3be7
commit d4af25b51b
No known key found for this signature in database
GPG key ID: 197A5888235FACAC
1 changed files with 22 additions and 0 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

22
gnu/packages/bioinformatics.scm
View file

@ -7800,6 +7800,28 @@ (define-public r-gkmsvm
kernels, including: gkmSVM, kmer-SVM, mismatch kernel and wildcard kernel.")
(license license:gpl2+)))
(define-public r-tximport
(package
(name "r-tximport")
(version "1.2.0")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "tximport" version))
(sha256
(base32
"1k5a7dad6zqg936s17f6cmwgqp11x24z9zhxndsgwbscgpyhpcb0"))))
(build-system r-build-system)
(home-page "http://bioconductor.org/packages/tximport")
(synopsis "Import and summarize transcript-level estimates for gene-level analysis")
(description
"This package provides tools to import transcript-level abundance,
estimated counts and transcript lengths, and to summarize them into matrices
for use with downstream gene-level analysis packages. Average transcript
length, weighted by sample-specific transcript abundance estimates, is
provided as a matrix which can be used as an offset for different expression
of gene-level counts.")
(license license:gpl2+)))
(define-public emboss
(package
(name "emboss")