mirror of
https://git.in.rschanz.org/ryan77627/guix.git
synced 2025-01-13 22:50:23 -05:00
gnu: Add python-cellbender.
* gnu/packages/bioinformatics.scm (python-cellbender): New variable.
This commit is contained in:
parent
6416e77280
commit
d84bedd830
1 changed files with 38 additions and 0 deletions
|
@ -806,6 +806,44 @@ (define-public bioawk
|
|||
intended to behave exactly the same as the original BWK awk.")
|
||||
(license license:x11)))
|
||||
|
||||
(define-public python-cellbender
|
||||
(package
|
||||
(name "python-cellbender")
|
||||
(version "0.2.1")
|
||||
(source
|
||||
(origin
|
||||
(method git-fetch)
|
||||
(uri (git-reference
|
||||
(url "https://github.com/broadinstitute/CellBender")
|
||||
(commit (string-append "v" version))))
|
||||
(file-name (git-file-name name version))
|
||||
(sha256
|
||||
(base32
|
||||
"1zav2q8nnss80i25y06fccagkvrqsy7lpylsl4dxv4qkj8p4fnv3"))))
|
||||
(build-system python-build-system)
|
||||
(arguments
|
||||
(list #:tests? #false)) ;there are none
|
||||
(propagated-inputs
|
||||
(list python-anndata
|
||||
python-matplotlib
|
||||
python-numpy
|
||||
python-pandas
|
||||
python-pyro-ppl
|
||||
python-scikit-learn
|
||||
python-scipy
|
||||
python-sphinx
|
||||
python-sphinx-argparse
|
||||
python-sphinx-autodoc-typehints
|
||||
python-sphinx-rtd-theme
|
||||
python-sphinxcontrib-programoutput
|
||||
python-tables))
|
||||
(home-page "https://cellbender.rtfd.io/")
|
||||
(synopsis "Eliminate technical artifacts from single-cell RNA-seq data")
|
||||
(description
|
||||
"CellBender is a software package for eliminating technical artifacts
|
||||
from high-throughput single-cell RNA sequencing (scRNA-seq) data.")
|
||||
(license license:bsd-3)))
|
||||
|
||||
(define-public python-htsget
|
||||
(package
|
||||
(name "python-htsget")
|
||||
|
|
Loading…
Reference in a new issue