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gnu: Add r-toast.
* gnu/packages/bioconductor.scm (r-toast): New variable. Change-Id: I922508bce0bdf0304e2f40d93a63ffdb58d03aa6
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@ -10867,6 +10867,44 @@ (define-public r-tkwidgets
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"This package implements widgets to provide user interfaces.")
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(license license:artistic2.0)))
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(define-public r-toast
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(package
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(name "r-toast")
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(version "1.16.0")
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(source
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(origin
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(method url-fetch)
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(uri (bioconductor-uri "TOAST" version))
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(sha256
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(base32 "00wpgs2zdrgrh9xmp6m5h9xgv85mhdi36qvwg9gwbz9i7cfabmy1"))))
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(properties `((upstream-name . "TOAST")))
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(build-system r-build-system)
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(propagated-inputs (list r-corpcor
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r-doparallel
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r-epidish
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r-ggally
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r-ggplot2
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r-limma
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r-nnls
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r-quadprog
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r-summarizedexperiment
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r-tidyr))
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(native-inputs (list r-knitr))
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(home-page "https://bioconductor.org/packages/TOAST")
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(synopsis "Tools for the analysis of heterogeneous tissues")
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(description
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"This package is devoted to analyzing high-throughput data (e.g. gene
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expression microarray, DNA methylation microarray, RNA-seq) from complex
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tissues. Current functionalities include
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@enumerate
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@item detect cell-type specific or cross-cell type differential signals
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@item tree-based differential analysis
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@item improve variable selection in reference-free deconvolution
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@item partial reference-free deconvolution with prior knowledge.
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@end enumerate")
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(license license:gpl2)))
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;; TODO: check javascript
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(define-public r-trackviewer
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(package
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