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Author SHA1 Message Date
Marius Bakke
4f55441fe3
gnu: transmission: Update to 2.92. 
* gnu/packages/bittorrent.scm (transmission): Update to 2.92.
[inputs]: Add cyrus-sasl.
 2016-11-26 12:32:01 +01:00
Ben Woodcroft
5e0a0f4226
gnu: roary: Update to 3.7.0. 
* gnu/packages/bioinformatics.scm (roary): Update to 3.7.0.
 2016-11-26 20:15:39 +10:00
Ben Woodcroft
31a9d653ad
gnu: Add proteinortho. 
* gnu/packages/bioinformatics.scm (proteinortho): New variable.
 2016-11-26 20:15:37 +10:00
Julien Lepiller
d3eff97afd
gnu: Add python-polib. 
* gnu/packages/python.scm (python-polib, python2-polib): New variables.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2016-11-26 10:29:29 +01:00
John Darrington
fc5dc4e81c
gnu: Whitespace changes 
* gnu/services/kerberos.scm: Fold lines to 80 character limit.
 2016-11-26 07:37:33 +01:00
Leo Famulari
53d892dd92
gnu: imagemagick: Update to 6.9.6-6 [fixes CVE-2016-9556]. 
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.6-6.
 2016-11-26 00:38:45 -05:00
宋文武
f88371e866
services: Add opensmtpd service. 
* gnu/services/mail.scm (<opensmtpd-configuration>): New record type.
(%default-opensmtpd-config-file, %opensmtpd-accounts): New variables.
(opensmtpd-shepherd-service, opensmtpd-activation): New procedures.
(opensmtpd-service-type): New variable.
* doc/guix.texi (Mail Services): Document it.
 2016-11-26 12:50:11 +08:00
Leo Famulari
0959478c72
gnu: Add missing module import to (gnu packages ldc). 
This is a followup to commit e44b511298.

* gnu/packages/ldc.scm: Import (gnu packages python).
 2016-11-25 23:18:29 -05:00
Danny Milosavljevic
e44b511298
gnu: ldc: Update to 0.17.2. 
* gnu/packages/ldc.scm (ldc): Update to 0.17.2.
* gnu/packages/patches/ldc-disable-tests.patch: Fix timezone file name.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2016-11-25 23:54:51 +01:00
Ludovic Courtès
6634180f9e
gnu: guile-ssh: Update to 0.10.2. 
* gnu/packages/ssh.scm (guile-ssh): Update to 0.10.2.
[home-page]: Update.
[source]: Use the 'url-fetch' method and a GitHub generated
tarball.
[arguments] <autoreconf>: Remove now unneeded 'chmod' call.
 2016-11-25 23:44:20 +01:00
Ricardo Wurmus
7276b5604d
gnu: hydrogen: Update to 0.9.7. 
* gnu/packages/music.scm (hydrogen): Update to 0.9.7.
 2016-11-25 21:44:16 +01:00
Leo Famulari
c415f76302
gnu: python-betamax: Fix typo. 
* gnu/packages/python.scm (python-betamax): Fix typo.
 2016-11-25 11:31:43 -05:00
Leo Famulari
de32aa74b4
Merge branch 'master' into python-build-system 2016-11-25 11:20:21 -05:00
Tobias Geerinckx-Rice
d66cbd1adc
gnu: btrfs-progs: Update to 4.8.4. 
* gnu/packages/linux.scm (btrfs-progs): Update to 4.8.4.
 2016-11-25 17:00:51 +01:00
Tobias Geerinckx-Rice
fc89cb691d
gnu: lz4: Update to 1.7.4.2. 
* gnu/packages/compression.scm (lz4): Update to 1.7.4.2.
 2016-11-25 16:31:20 +01:00
Tobias Geerinckx-Rice
dead1067c3
gnu: hplip: Update to 3.16.11. 
* gnu/packages/cups.scm (hplip): Update to 3.16.11.
 2016-11-25 16:31:10 +01:00
Ricardo Wurmus
aaaf8b3844
gnu: qtractor: Update to 0.8.0. 
* gnu/packages/music.scm (qtractor): Update to 0.8.0.
 2016-11-25 13:08:06 +01:00
Alex Kost
1e34721435
gnu: qemu: Install all required info files. 
* gnu/packages/qemu.scm (qemu)[arguments]: Adjust 'install-info' phase
to find all info files (including "*.info-N").
 2016-11-25 16:09:22 +03:00
Theodoros Foradis
8f528bd442
gnu: Add kicad-library. 
* gnu/packages/engineering.scm (kicad-library): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-11-25 00:38:11 -05:00
Theodoros Foradis
befc9ff643
gnu: Add kicad. 
* gnu/packages/engineering.scm (kicad): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-11-25 00:38:11 -05:00
Theodoros Foradis
b353c7d201
gnu: Add python2-wxpython. 
* gnu/packages/wxwidgets.scm (python2-wxpython): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-11-25 00:38:10 -05:00
Theodoros Foradis
2cd3b6fd03
gnu: Add wxwidgets-gtk2. 
* gnu/packages/wxwidgets.scm (wxwidgets-gtk2): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-11-25 00:38:10 -05:00
Leo Famulari
88d45b74c1
gnu: nginx: Update to 1.11.6. 
* gnu/packages/web.scm (nginx): Update to 1.11.6.
[arguments]: Remove the obsolete option --with-ipv6 from #:configure-flags.
 2016-11-25 00:07:40 -05:00
Tobias Geerinckx-Rice
e0f8a520ed
gnu: miniupnpc: Improve synopsis and description. 
* gnu/packages/upnp.scm (miniupnp)[synopsis, description]: Edit, fix typos,
add some relevant (search) terms from the home page, and expand acronyms.
 2016-11-25 02:21:51 +01:00
Tobias Geerinckx-Rice
5af82630fe
gnu: miniupnpc: Use the correct ‘upnpc’ in ‘external-ip’. 
* gnu/packages/upnp.scm (miniupnpc)[arguments]: Add ‘qualify-paths’ phase.
 2016-11-25 02:21:51 +01:00
Tobias Geerinckx-Rice
cdbdaf7b6b
gnu: miniupnpc: Use ‘modify-phases’ syntax. 
* gnu/packages/upnp.scm (miniupnpc)[arguments]: Use ‘modify-phases’.
 2016-11-25 02:21:50 +01:00
Tobias Geerinckx-Rice
2d3b0203f4
gnu: miniupnpc: Update to 2.0. 
* gnu/packages/upnp.scm (miniupnpc): Update to 2.0.
 2016-11-25 02:21:50 +01:00
Tobias Geerinckx-Rice
ade5848576
gnu: vim: Update to 8.0.0101. 
* gnu/packages/vim.scm (vim, vim-full): Update to 8.0.0101.
 2016-11-25 02:21:49 +01:00
Ludovic Courtès
13fb1bd94e
doc: Document encrypted root partitions. 
This is a followup to f7f292d359.

* doc/guix.texi (Preparing for Installation): Give commands for
encrypted root installation.
(Proceeding with the Installation): Add item about mapped devices.
(File Systems): Mention that 'dependencies' can list <mapped-device>
objects.
* gnu/system/examples/desktop.tmpl (mapped-devices): New field.
(file-systems): Add 'dependencies' field.
 2016-11-24 23:20:41 +01:00
Ludovic Courtès
030f59fac9
services: network-manager: Depend on 'wpa-supplicant'. 
Suggested by Chris Marusich <cmmarusich@gmail.com>.

* gnu/services/networking.scm (network-manager-shepherd-service)
[requirement]: Add 'wpa-supplicant'.
 2016-11-24 21:43:48 +01:00
Ludovic Courtès
89007a0bb7
services: network-manager: Install polkit actions. 
Reported by Chris Marusich <cmmarusich@gmail.com>
at <https://lists.gnu.org/archive/html/help-guix/2016-11/msg00038.html>.

* gnu/services/networking.scm (network-manager-service-type)[extensions]:
Add POLKIT-SERVICE-TYPE.
 2016-11-24 21:43:47 +01:00
Ludovic Courtès
2e32869824
services: Move polkit to (gnu services dbus). 
* gnu/services/desktop.scm (<polkit-configuration>, %polkit-accounts)
(%polkit-pam-services, polkit-directory, polkit-etc-files)
(polkit-setuid-programs, polkit-service-type, polkit-service): Move
to...
* gnu/services/dbus.scm: ... here.
 2016-11-24 21:43:47 +01:00
Ludovic Courtès
62126576fc
gnu: hdf5: Build the C++ interface. 
* gnu/packages/maths.scm (hdf5)[arguments]: Add #:configure-flags.
 2016-11-24 21:43:47 +01:00
Tobias Geerinckx-Rice
6f09c100d9
gnu: vim: Update to 8.0.0096. 
* gnu/packages/vim.scm (vim, vim-full): Update to 8.0.0096.
 2016-11-24 16:57:22 +01:00
Tobias Geerinckx-Rice
c50f2af9f8
gnu: ir: Use archived tarball and home page. 
* gnu/packages/audio.scm (ir)[source]: Use a list of archive mirrors.
[home-page]: Link to an Internet Archive snapshot.
 2016-11-24 06:34:37 +01:00
Tobias Geerinckx-Rice
2df984f278
gnu: ir: Use ‘modify-phases’ syntax. 
* gnu/packages/audio.scm (ir)[arguments]: Use ‘modify-phases’.
 2016-11-24 06:34:37 +01:00
Ludovic Courtès
cc73339b97
tests: Remove 'GUIX_LOCPATH' hack that had been added for glibc@2.23. 
* gnu/tests/base.scm (run-basic-test)[test]("locale"): Remove
'GUIX_LOCPATH' hack, which is no longer needed since
commit 9f58fe3d1c.
 2016-11-23 21:13:18 +01:00
Ludovic Courtès
f7f292d359
install: Enable "cryptodisk" handling in GRUB. 
This allows 'grub-install' to do the right thing when / or /boot is a
LUKS-encrypted partition.

Fixes <http://bugs.gnu.org/21843>.

* gnu/build/install.scm (install-grub): Add 'setenv' to set
'GRUB_ENABLE_CRYPTODISK'.
(wait-for-screen-text): New test.
* gnu/tests/base.scm (run-basic-test): Add #:initialization parameter
and honor it.
* gnu/tests/install.scm (%encrypted-root-os)[kernel-arguments]: Remove.
(%encrypted-root-installation-script): Pass '--uuid' to 'cryptsetup
luksFormat'.  Remove 'sed' invocation.
(enter-luks-passphrase): New procedure.
(%test-encrypted-os)[value]: Pass #:initialization to 'run-basic-test'.
 2016-11-23 21:13:18 +01:00
Ludovic Courtès
b7d408ec1b
mapped-devices: Use 'cryptsetup-static' in 'luks-device-mapping'. 
* gnu/system/mapped-devices.scm (open-luks-device): Use
CRYPTSETUP-STATIC instead of CRYPTSETUP.  Use 'file-append'.
(close-luks-device): Likewise.
 2016-11-23 21:13:18 +01:00
Ludovic Courtès
fe93383350
marionette: Add 'marionette-screen-text' using OCR. 
* gnu/build/marionette.scm (marionette-screen-text): New procedure.
* gnu/tests/base.scm (run-basic-test)["screen text"]: New test.
 2016-11-23 21:13:18 +01:00
Ludovic Courtès
f25c9ebc80
marionette: Delay synchronization with the host's REPL. 
* gnu/build/marionette.scm (<marionette>)[marionette-repl]: Rename to...
[%marionette-repl]: ... this.
(marionette-repl): New macro.
(make-marionette): Wrap last 'read' call into 'delay', making the last
argument to 'marionette' a promise of a port.
(marionette-eval): Use 'force' in 'match' clause.
 2016-11-23 21:13:18 +01:00
Leo Famulari
1c9f78eca1
gnu: python-passlib: Update to 1.7.0. 
* gnu/packages/python.scm (python-passlib, python2-passlib): Update to 1.7.0.
 2016-11-23 14:38:05 -05:00
Efraim Flashner
262c2d33bc
gnu: perl-digest-md5: Fix typo. 
* gnu/packages/perl.scm (perl-digest-md5)[arguments]: Remove extra ')'.
 2016-11-23 18:16:53 +02:00
ng0
8a28e717ba
gnu: Add perl-digest-md5. 
* gnu/packages/perl.scm (perl-digest-md5): New variable.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2016-11-23 16:46:47 +01:00
Efraim Flashner
bc05caee77
gnu: chez.scm: Add '#:use-module srfi srfi-1'. 
This is a follow-up to 1e16648f82.

* gnu/packages/chez.scm: Add '#:use-module srfi srfi-1'.
 2016-11-23 12:42:36 +02:00
Efraim Flashner
8553fe5734
gnu: Add aspell-dict-he. 
* gnu/packages/aspell.scm (aspell-dict-he): New variable.
 2016-11-23 12:38:28 +02:00
Efraim Flashner
1e16648f82
gnu: chez-scheme: Remove support for armhf. 
* gnu/packages/chez.scm (chez-scheme)[supported-systems]: Remove
armhf-linux from the list of supported systems.
 2016-11-23 12:37:17 +02:00
Mark H Weaver
08b3e4a970
gnu: linux-libre: Update to 4.8.10. 
* gnu/packages/linux.scm (%linux-libre-version, %linux-libre-hash)
(linux-libre): Update to 4.8.10.
 2016-11-22 21:59:54 -05:00
Mark H Weaver
4263eb4dd0
gnu: linux-libre@4.4: Update to 4.4.34. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.34.
 2016-11-22 21:49:39 -05:00
Ludovic Courtès
66ebb5bca3
gnu: guix: Update development snapshot. 
* gnu/packages/package-management.scm (guix-devel): Update to 1f410017.
 2016-11-23 00:03:18 +01:00
Ludovic Courtès
35b2f18c5f
Revert "gnu: Update mit-krb5 to version 1.14.4." 
This reverts commit 2947ff6430, which
would have caused too many rebuilds for 'master'.
 2016-11-23 00:03:17 +01:00
Ludovic Courtès
ad17470551
marionette: Avoid use of SIGALRM for timeouts. 
* gnu/build/marionette.scm (make-marionette)[accept*]: New procedures.
Remove calls to 'sigaction'.  Use 'accept*' instead of 'accept'.
 2016-11-22 23:45:08 +01:00
Ludovic Courtès
106b389e52
gnu: Add 'cryptsetup-static'. 
* gnu/packages/cryptsetup.scm (static-library): New procedure.
(cryptsetup-static): New variable.
 2016-11-22 23:45:01 +01:00
Ludovic Courtès
01f94cca19
gnu: Add 'lvm2-static'. 
* gnu/packages/patches/lvm2-static-link.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/linux.scm (lvm2)[source](patches): New field.
(lvm2-static): New variable.
 2016-11-22 22:59:31 +01:00
Ludovic Courtès
10da75dff8
gnu: grub: Add dependency on LVM2. 
* gnu/packages/grub.scm (grub)[inputs]: Add LVM2.
 2016-11-22 22:59:31 +01:00
Christopher Allan Webber
8957af324b
gnu: python-pyld: Update to 0.7.1. 
* gnu/packages/python.scm (python-pyld): Update to 0.7.1.
 2016-11-22 15:29:33 -06:00
John Darrington
2947ff6430
gnu: Update mit-krb5 to version 1.14.4. 
* gnu/packages/mit-krb5.scm (mit-krb5): Update to 1.14.4
 2016-11-22 21:27:19 +01:00
Marius Bakke
1f410017ff
gnu: notmuch: Update to 0.23.2. 
* gnu/packages/mail.scm (notmuch): Update to 0.23.2.
 2016-11-22 20:44:53 +01:00
Marius Bakke
6317d36f3b
gnu: notmuch: Skip tests that fail with gnupg-2.1.16. 
* gnu/packages/mail.scm (notmuch)[arguments]: Add environment variable
to skip tests that broke after gnupg-2.1.16.
 2016-11-22 20:44:48 +01:00
Leo Famulari
be72eb98fa
gnu: libtiff: Update replacement to 4.0.7. 
* gnu/packages/image.scm (libtiff)[replacement]: Update to 4.0.7.
(libtiff-4.0.7): New variable. Update home-page and source URLs.
(libtiff/fixed): Delete variable.
* gnu/packages/patches/libtiff-CVE-2016-5652.patch,
gnu/packages/patches/libtiff-CVE-2016-9273.patch,
gnu/packages/patches/libtiff-CVE-2016-9297.patch,
gnu/packages/patches/libtiff-CVE-2016-9448.patch,
gnu/packages/patches/libtiff-uint32-overflow.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
 2016-11-22 12:30:36 -05:00
Marius Bakke
d8e3bb082d
gnu: vim: Update to 8.0.0095. 
* gnu/packages/vim.scm (vim, vim-full): Update to 8.0.0095.
 2016-11-22 17:33:07 +01:00
Kei Kebreau
c3cc7d412a
gnu: Add espeak. 
* gnu/packages/audio.scm (espeak): New variable.
 2016-11-22 11:24:41 -05:00
Eric Bavier
52db41aff8
gnu: system: Add openfwwf-firmware to %base-firmware. 
* gnu/system.scm (%base-firmware): Add openfwwf-firmware.
* doc/guix.texi (Hardware Considerations): Mention b43-open support.
(operating-system Reference)[firmware]: Likewise.
 2016-11-22 09:38:36 -06:00
Eric Bavier
e36a67c91a
gnu: Add openfwwf-firmware. 
* gnu/packages/firmware.scm (b43-tools, openfwwf-firmware): New
variables.
 2016-11-22 09:38:36 -06:00
Efraim Flashner
4a5ec78d5f
gnu: w3m: Update to 0.5.3+git20161120 [fixes security issues]. 
Fixes CVE-2016-9439 and others.

* gnu/packages/w3m.scm (w3m): Update to 0.5.3+git20161120.
 2016-11-22 14:00:11 +02:00
Efraim Flashner
83a3e805be
gnu: w3m: Use 'modify-phases' syntax. 
* gnu/packages/w3m.scm (w3m)[arguments]: Use 'modify-phases' syntax.
 2016-11-22 14:00:11 +02:00
Ben Woodcroft
ee7518a009
gnu: ruby: Update replacement to 2.3.3. 
* gnu/packages/ruby.scm (ruby)[replacement]: Update to 2.3.3.
(ruby-2.3.2): Replace this ...
(ruby-2.3.3): ... with this.
 2016-11-22 21:39:18 +10:00
Ben Woodcroft
8e5f8c98e2
gnu: diamond: Update to 0.8.27. 
* gnu/packages/bioinformatics.scm (diamond): Update to 0.8.27.
 2016-11-22 21:01:21 +10:00
Ricardo Wurmus
1ea7969fa6
gnu: zynaddsubfx: Update to 3.0.0. 
* gnu/packages/music.scm (zynaddsubfx): Update to 3.0.0.
[inputs]: Add "mesa".
 2016-11-22 09:47:16 +01:00
Efraim Flashner
dd3f8fe660
gnu: connman: Update to 1.33. 
* gnu/packages/connman.scm (connman): Update to 1.33.
 2016-11-21 23:52:19 +02:00
Petter
daf72603eb
gnu: Remove redundancy where mkdir-p <dir> is followed by install-file <file> <dir>. 
* gnu/packages/bioinformatics.scm (bwa)[arguments]: Remove redundant mkdir-p.
(eigensoft)[arguments]: Likewise.
(snap-aligner)[arguments]: Likewise.
(pardre)[arguments]: Likewise.
(piranha)[arguments]: Likewise.
* gnu/packages/maths.scm (hypre)[arguments]: Likewise.
* gnu/packages/mp3.scm (mpc123)[arguments]: Likewise.
* gnu/packages/music.scm (tuxguitar)[arguments]: Likewise.
* gnu/packages/pdf.scm (impressive)[arguments]: Likewise.
* gnu/packages/qemu.scm (qemu)[arguments]: Likewise.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-11-21 14:39:54 -05:00
Alex Kost
7c90d0f40e
gnu: packages: Use gettext-minimal. 
* gnu/packages/crypto.scm (tomb): Use 'gettext-minimal' instead of
'gnu-gettext'.
* gnu/packages/emacs.scm (m17n-db): Likewise.
* gnu/packages/ftp.scm (weex): Likewise.
* gnu/packages/games.scm (chromium-bsu): Likewise.
* gnu/packages/image.scm (steghide): Likewise.
* gnu/packages/linux.scm (radeontop): Likewise.
* gnu/packages/mpd.scm (sonata): Likewise.
* gnu/packages/networking.scm (whois): Likewise.
* gnu/packages/package-management.scm (guix-0.11.0): Likewise.
* gnu/packages/psyc.scm (psyclpc): Likewise.
* gnu/packages/syndication.scm (newsbeuter): Likewise.
* gnu/packages/vim.scm (vim-full): Likewise.
 2016-11-21 19:47:30 +03:00
Leo Famulari
dc6d1b9609
gnu: libtiff: Fix URL in 'libtiff-uint32-overflow.patch'. 
* gnu/packages/patches/libtiff-uint32-overflow.patch: Fix URL.
 2016-11-21 11:16:37 -05:00
Ludovic Courtès
c9eae83ffa
gnu: dico: Update to 2.4. 
* gnu/packages/dico.scm (dico): Update to 2.4.
[source]: Remove 'snippet'.
 2016-11-21 15:25:38 +01:00
Ludovic Courtès
b3131e2318
services: static-networking: Remove unused parameter. 
This is a followup to e48fcd7b8d.

* gnu/services/networking.scm (static-networking-service): Remove #:net-tools.
(static-networking-service-type): Remove outdated comment.
 2016-11-21 15:25:38 +01:00
ng0
e01e2c6c52
gnu: services: Add git-service. 
* gnu/services/version-control.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* doc/guix.texi (Misellaneous Services)[Version Control]: New section.

Co-authored-by: 宋文武 <iyzsong@member.fsf.org>
 2016-11-21 20:37:43 +08:00
Ricardo Wurmus
2316078a4e
gnu: Add emacs-emms-mode-line-cycle. 
* gnu/packages/emacs.scm (emacs-emms-mode-line-cycle): New variable.
 2016-11-21 11:52:26 +01:00
Efraim Flashner
83b294b6d6
gnu: opusfile: Update to 0.8. 
* gnu/packages/xiph.scm (opusfile): Update to 0.8.
 2016-11-21 10:49:45 +02:00
Efraim Flashner
b1e25b08f2
gnu: obs: Update to 0.16.6. 
* gnu/packages/video.scm (obs): Update to 0.16.6.
 2016-11-21 07:14:05 +02:00
Efraim Flashner
89a30625b9
gnu: mpv: Update to 0.22.0. 
* gnu/packages/video.scm (mpv): Update to 0.22.0.
 2016-11-21 06:57:16 +02:00
Efraim Flashner
7ceee88c43
gnu: chez-scheme: Properly identify system architecture. 
* gnu/packages/chez.dcm (chez-scheme)[arguments]: Substitute `uname -m'
for `uname -a' in configure, allowing proper identification of the
machine architecture.
 2016-11-21 06:57:16 +02:00
Ludovic Courtès
e48fcd7b8d
services: static-networking: Avoid use of net-tools. 
* gnu/services/networking.scm (<static-networking>)[net-tools]: Remove.
(static-networking-service-type): Use 'add-network-route/gateway' and
'delete-network-route' instead of NET-TOOLS.
(static-networking-service): Adjust accordingly.
 2016-11-21 00:34:49 +01:00
Julien Lepiller
1845c2a436
gnu: Add php. 
* gnu/packages/php.scm: New file.
* gnu/packages/patches/gd-fix-chunk-size-on-boundaries.patch: New file.
* gnu/packages/patches/gd-fix-truecolor-format-correction.patch: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add php.
(dist_patch_DATA): Add gd patches.

Co-authored-by: Marius Bakke <mbakke@fastmail.com>
 2016-11-20 17:54:14 +01:00
Marius Bakke
b28a33512f
gnu: Add sqlite-3.15.1. 
* gnu/packages/databases.scm (sqlite-3.15.1): New variable.
 2016-11-20 17:46:32 +01:00
Nicolas Goaziou
43ffe220c8
gnu: lilypond: Update to 2.19.51. 
* gnu/packages/music.scm (lilypond): Update to 2.19.51.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2016-11-20 17:46:21 +01:00
Leo Famulari
25291aca74
gnu: python-icalendar: Update to 3.11. 
* gnu/packages/python.scm (python-icalendar): Update to 3.11.
 2016-11-20 11:22:27 -05:00
Leo Famulari
764c566221
gnu: gnupg: Update to 2.1.16. 
* gnu/packages/gnupg.scm (gnupg): Update to 2.1.16.
[arguments]: Remove obsolete substitution from 'patch-paths' phase.
Remove 'set-home' phase. Add 'set-gnupg-home' phase.
 2016-11-19 23:43:32 -05:00
宋文武
9fff9e6484
gnu: gtk-engines: Don't propagate GTK+. 
* gnu/packages/gtk.scm (gtk-engines): Move gtk+ to 'inputs'.
 2016-11-20 12:02:04 +08:00
Mark H Weaver
5a1ef07d3e
gnu: linux-libre: Update to 4.8.9. 
* gnu/packages/linux.scm (%linux-libre-version, %linux-libre-hash)
(linux-libre): Update to 4.8.9.
 2016-11-19 22:29:38 -05:00
Mark H Weaver
13172f0d79
gnu: linux-libre@4.4: Update to 4.4.33. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.33.
 2016-11-19 22:28:07 -05:00
Ben Woodcroft
9b62c5a8fb
gnu: ruby: Replace with ruby-2.3.2 [fixes CVE-2015-3900]. 
* gnu/packages/ruby.scm (ruby)[replacement]: New field.
(ruby-2.3.2): New variable.
 2016-11-20 11:38:12 +10:00
Ludovic Courtès
966a543b36
gnu: Use 'mirror://' URLs in several places. 
* gnu/packages/emacs.scm (m17n-lib)[source]: Use 'mirror://'.
* gnu/packages/games.scm (extremetuxracer)[source]: Likewise.
* gnu/packages/gcc.scm (%gcc-infrastructure): Likewise.
* gnu/packages/gtk.scm (python2-pygtk)[source]: Likewise.
* gnu/packages/perl.scm (perl)[source]: Likewise.
* gnu/packages/telephony.scm (exosip)[source]: Likewise.
* gnu/packages/wm.scm (xmonad)[source]: Likewise.
(ghc-xmonad-contrib)[source]: Likewise.
 2016-11-19 18:44:54 +01:00
Ludovic Courtès
6129dd8b59
vm: Disable initrd-time QEMU networking for VM images. 
Fixes <http://bugs.gnu.org/24943>.
Reported by dian_cecht@zoho.com.

* gnu/system/vm.scm (system-qemu-image)[initrd]: Remove
 #:qemu-networking? #t.
(virtualized-operating-system): Likewise
 2016-11-19 18:44:54 +01:00
Ricardo Wurmus
18675264c6
gnu: Add samplv1. 
* gnu/packages/music.scm (samplv1): New variable.
 2016-11-19 17:54:50 +01:00
Ricardo Wurmus
cf9af706fb
gnu: Add drumkv1. 
* gnu/packages/music.scm (drumkv1): New variable.
 2016-11-19 17:54:50 +01:00
Leo Famulari
2fedcd1895
gnu: libtiff: Fix CVE-2016-9448. 
* gnu/packages/patches/libtiff-CVE-2016-9448.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/image.scm (libtiff/fixed)[source]: Use it.
 2016-11-19 11:31:00 -05:00
Leo Famulari
b7e0f65b40
gnu: imagemagick: Update to 6.9.6-5. 
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.6-5.
 2016-11-19 10:48:51 -05:00
Rene Saavedra
3446ffb57c
gnu: gnome-control-center: Add gdk-pixbuf input. 
* gnu/packages/gnome.scm (gnome-control-center)[inputs]: Add gdk-pixbuf.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-11-19 10:38:01 -05:00
ng0
8f49395064
gnu: Add emacs-danneskjold-theme. 
* gnu/packages/emacs.scm (emacs-danneskjold-theme): New variable.

Signed-off-by: 宋文武 <iyzsong@gmail.com>
 2016-11-19 21:31:20 +08:00
ng0
5cd4129221
gnu: emacs-cyberpunk-theme: Update to 1.18. 
* gnu/packages/emacs.scm (emacs-cyberpunk-theme): Update to 1.18.

Signed-off-by: 宋文武 <iyzsong@gmail.com>
 2016-11-19 20:19:03 +08:00
Nicolas Goaziou
fd057b84ec
gnu: emacs-org: Update to 20161118. 
* gnu/packages/emacs.scm (emacs-org): Update to 20161118.

Signed-off-by: 宋文武 <iyzsong@gmail.com>
 2016-11-19 20:09:50 +08:00
宋文武
e5aade794a
services: dicod-service: Honor 'dicod-configuration-dico'. 
* gnu/services/dict.scm (dicod-shepherd-service): Use
'dicod-configuration-dico' of config.
 2016-11-19 19:37:30 +08:00
宋文武
ae1e2133b9
gnu: opensmtpd: Correct CA certificates file path. 
* gnu/packages/mail.scm (opensmtpd)[arguments]: Pass
'--with-path-CAfile=/etc/ssl/certs/ca-certificates.crt' to #:configure-flags.
 2016-11-19 19:19:16 +08:00
Ricardo Wurmus
cfcef2c2ac
gnu: gx-switchless-wah-lv2: Update to 0-2.7b0869120. 
* gnu/packages/music.scm (gx-switchless-wah-lv2): Update to
0-2.7b0869120.
[arguments]: Remove "escape-shell-commands" phase.
 2016-11-19 11:26:16 +01:00
Ricardo Wurmus
8e6f6503f0
gnu: gx-slow-gear-lv2: Update to 0-2.cb852e042. 
* gnu/packages/music.scm (gx-slow-gear-lv2): Update to 0-2.cb852e042.
[arguments]: Remove "escape-shell-commands" phase.
 2016-11-19 11:26:16 +01:00
Ricardo Wurmus
a7cd2d44e1
gnu: gx-vintage-fuzz-master-lv2: Update to 0-2.0fec0bc1e. 
* gnu/packages/music.scm (gx-vintage-fuzz-master-lv2): Update to
0-2.0fec0bc1e.
[arguments]: Remove "escape-shell-commands" phase.
 2016-11-19 11:26:16 +01:00
Ricardo Wurmus
1df4d85f8b
gnu: gx-super-fuzz-lv2: Update to 0-2.f40389575. 
* gnu/packages/music.scm (gx-super-fuzz-lv2): Update to 0-2.f40389575.
[arguments]: Remove "escape-shell-commands" phase.
 2016-11-19 11:26:16 +01:00
Ricardo Wurmus
c1802b0834
gnu: gx-voodoo-fuzz-lv2: Update to 0-2.aec7889b4. 
* gnu/packages/music.scm (gx-voodoo-fuzz-lv2): Update to 0-2.aec7889b4.
[arguments]: Remove "escape-shell-commands" phase.
 2016-11-19 11:26:15 +01:00
Ricardo Wurmus
dad6cb50da
gnu: gx-hyperion-lv2: Update to 0-2.6a096a664. 
* gnu/packages/music.scm (gx-hyperion-lv2): Update to 0-2.6a096a664.
[arguments]: Remove "escape-shell-commands" phase.
 2016-11-19 11:26:15 +01:00
Ricardo Wurmus
31de5e2244
gnu: gx-saturator-lv2: Update to 0-2.0b581ac85. 
* gnu/packages/music.scm (gx-saturator-lv2): Update to 0-2.0b581ac85.
[arguments]: Remove "escape-shell-commands" phase.
 2016-11-19 11:26:15 +01:00
Ricardo Wurmus
4ed4bb11cb
gnu: qsynth: Update to 0.4.3. 
* gnu/packages/audio.scm (qsynth): Update to 0.4.3.
 2016-11-19 11:26:15 +01:00
Ricardo Wurmus
f2bd238bcd
gnu: synthv1: Update to 0.8.0. 
* gnu/packages/music.scm (synthv1): Update to 0.8.0.
 2016-11-19 11:26:15 +01:00
Nicolas Goaziou
2c453091e4
gnu: wireshark: Update to 2.2.2. 
* gnu/packages/networking.scm (wireshark): Update to 2.2.2.

Signed-off-by: 宋文武 <iyzsong@gmail.com>
 2016-11-19 16:33:55 +08:00
Nicolas Goaziou
ce53f5cbf0
gnu: giac-xcas: Update to 1.2.2-103 
* gnu/packages/algebra.scm (giac-xcas): Update to 1.2.2-103.

Signed-off-by: 宋文武 <iyzsong@gmail.com>
 2016-11-19 16:28:58 +08:00
Muriithi Frederick Muriuki
6689c636d0
gnu: Add ruby-net-http-digest-auth. 
* gnu/packages/ruby.scm (ruby-net-http-digest-auth): New variable.
 2016-11-19 15:16:19 +10:00
Ben J Woodcroft
4af80275a8
gnu: ruby-2.2: Update to 2.2.6. 
* gnu/packages/ruby.scm (ruby-2.2): Update to 2.2.6.
 2016-11-19 07:48:01 +10:00
ng0
175d626478
gnu: mps-youtube: Disable tests. 
* gnu/packages/video.scm (mps-youtube): Disable tests.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-11-18 15:16:48 -05:00
ng0
ed3fee5f7b
gnu: python-pafy: Disable tests. 
* gnu/packages/python.scm (python-pafy): Disable tests.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-11-18 15:16:48 -05:00
Petter
01278f16a9
gnu: Add xcalib. 
* gnu/packages/xdisorg (xcalib): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2016-11-18 15:05:59 -05:00
Ludovic Courtès
c2662820f3
gnu: emacs-org: Update to 20161102. 
* gnu/packages/emacs.scm (emacs-org)[source]: Switch to elpa.gnu.org so
'guix refresh' can pick it up.  Update to 20161102.
 2016-11-18 18:28:03 +01:00
Ludovic Courtès
8134dc1f74
gnu: guile@2.0.13: Fix non-determinism issue in REPL server test. 
* gnu/packages/patches/guile-repl-server-test.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/guile.scm (guile-2.0.13)[source]: Use it.
 2016-11-18 18:28:02 +01:00
Danny Milosavljevic
651049789f
gnu: xonsh: Update to 0.4.7. 
* gnu/packages/shells.scm (xonsh): Update to 0.4.7.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2016-11-18 17:02:30 +01:00
宋文武
d7da76044b
gnu: opensmtpd: Build man pages. 
* gnu/packages/mail.scm (opensmtpd)[native-inputs]: Add groff.
 2016-11-18 22:19:49 +08:00
Efraim Flashner
4d17fe2ad3
gnu: python-gst: Update to 1.10.1. 
* gnu/packages/gstreamer.scm (python-gst, python2-gst): Update to 1.10.1.
 2016-11-18 14:26:40 +02:00
Efraim Flashner
950548b0f7
gnu: gst-libav: Update to 1.10.1. 
* gnu/packages/gstreamer.scm (gst-libav): Update to 1.10.1.
 2016-11-18 14:26:40 +02:00
Efraim Flashner
2e747a3ff6
gnu: gst-plugins-ugly: Update to 1.10.1. 
* gnu/packages/gstreamer.scm (gst-plugins-ugly): Update to 1.10.1.
 2016-11-18 14:26:39 +02:00
Efraim Flashner
95e89a4510
gnu: gst-plugins-bad: Update to 1.10.1 (Fixes security issues). 
* gnu/packages/gstreamer.scm (gst-plugins-bad): Update to 1.10.1.
 2016-11-18 14:26:39 +02:00
Efraim Flashner
faa3c13920
gnu: gst-plugins-good: Update to 1.10.1. 
* gnu/packages/gstreamer.scm (gst-plugins-good): Update to 1.10.1.
 2016-11-18 10:01:29 +02:00
Efraim Flashner
de0e591a53
gnu: gst-plugins-base: Update to 1.10.1. 
* gnu/packages/gstreamer.scm (gst-plugins-base): Update to 1.10.1.
 2016-11-18 10:01:29 +02:00
Efraim Flashner
28e3663134
gnu: gstreamer: Update to 1.10.1. 
* gnu/packages/gstreamer.scm (gstreamer): Update to 1.10.1.
 2016-11-18 10:01:17 +02:00
Ludovic Courtès
1f9803c2a4
services: static-networking: Add netmask. 
Reported by Mathieu Lirzin and Andreas Enge.

* gnu/services/networking.scm (<static-networking>)[netmask]: New
field.
(static-networking-service-type): Honor it.
* gnu/services/networking.scm (static-networking-service): Add #:netmask
and honor it.
* doc/guix.texi (Networking Services): Adjust accordingly.
 2016-11-17 23:21:48 +01:00
Ludovic Courtès
056d0b4034
tests: basic: Fix harmless thinko. 
* gnu/tests/base.scm (run-basic-test)["login on tty1"]: Move the
file-waiting loop inside the 'marionette-eval' body.  Before that, we
were waiting for the file to appear on the host, which would never
happen, meaning that we were always waiting for 15 seconds.
 2016-11-17 23:21:48 +01:00
Leo Famulari
175c910380
gnu: mpop: Use 'sourceforge' mirror. 
This is a followup to commit 5837e69936.

* gnu/packages/mail.scm (mpop)[source]: Use 'sourceforge' mirror.
 2016-11-17 15:56:06 -05:00
Arun Isaac
5837e69936
gnu: mpop: Update to 1.2.6. 
* gnu/packages/mail.scm (mpop): Update to 1.2.6.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2016-11-17 17:45:38 +01:00
Efraim Flashner
e5294500d6
gnu: obs: Update to 0.16.5. 
* gnu/packages/video.scm (obs): Update to 0.16.5.
 2016-11-17 07:26:20 +02:00
Efraim Flashner
ca569eb89f
gnu: aria2: Update to 1.29.0. 
* gnu/packages/bittorrent.scm (aria2): Update to 1.29.0.
 2016-11-17 07:26:20 +02:00
Mark H Weaver
2f63e087fe
Revert "gnu: icecat: Enable gtk3 support." 
This reverts commit eaf72e218e.

IceCat misbehaves with gtk+3, most notably the scroll bar handles are
invisible.  Here we revert back to gtk+2 until these problems can be
addressed.
 2016-11-16 22:34:11 -05:00
Eric Bavier
fe047e1380
gnu: Add Handbrake. 
* gnu/packages/video.scm (handbrake): New variable.
* gnu/packages/patches/handbrake-pkg-config-path.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Add it.
 2016-11-16 20:58:12 -06:00
Leo Famulari
1339a8ed1c
gnu: libtiff: Fix some buffer overflows. 
* gnu/packages/patches/libtiff-uint32-overflow.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/image.scm (libtiff/fixed)[source]: Use it.
 2016-11-16 19:59:28 -05:00
Leo Famulari
7cea56e2ac
gnu: libtiff: Fix CVE-2016-9297. 
* gnu/packages/patches/libtiff-CVE-2016-9297.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/image.scm (libtiff/fixed)[source]: Use it.
 2016-11-16 19:59:24 -05:00
Efraim Flashner
d87c201f96
gnu: jasper: Update to 1.900.29. 
* gnu/packages/image.scm (jasper): Update to 1.900.29.
[inputs]: Add libjpeg.
 2016-11-16 22:06:33 +02:00
Mark H Weaver
9cdb405b81
gnu: icecat: Remove unneeded patch. 
This is a followup to commit 1a87aa7567.

* gnu/packages/gnuzilla.scm (icecat)[sources][patches]: Remove patch for
CVE-2016-5296, which is for a bundled copy of pixman that is
subsequently deleted by a snippet.
 2016-11-16 14:14:25 -05:00
Marius Bakke
d3e5dc0a44
gnu: perl-dbd-mysql: Update to 4.039 [Fixes CVE-2016-1249]. 
* gnu/packages/databases.scm (perl-dbd-mysql): Update to 4.039.
[source]: Update CPAN URI.
 2016-11-16 18:33:57 +00:00
Leo Famulari
1d87fdf531
gnu: ncmpcpp: Update to 0.7.7. 
* gnu/packages/mpd.scm (ncmpcpp): Update to 0.7.7.
 2016-11-16 13:09:36 -05:00
Leo Famulari
0ffa8b8e7b
gnu: shotwell: Update to 0.25.0.1. 
* gnu/packages/gnome.scm (shotwell): Update to 0.25.0.1.
 2016-11-16 13:09:36 -05:00
Mark H Weaver
1a87aa7567
gnu: icecat: Add fixes from Firefox ESR 45.5.0. 
Includes fixes for CVE-2016-5290, CVE-2016-5291, CVE-2016-5297, CVE-2016-9064,
and CVE-2016-9066.

* gnu/packages/gnuzilla.scm (icecat)[source][patches]: Add fixes for
aforementioned CVEs and other selected fixes from Firefox ESR 45.5.0.  Note
that the first six patches of CVE-2016-5290 and the patch for CVE-2016-9066
were already present, but were labeled by mozilla bug number instead of CVE.
* gnu/packages/patches/icecat-CVE-2016-9064.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2016-11-16 13:04:02 -05:00
Mark H Weaver
56ac2bf442
gnu: pixman: Add fix for CVE-2016-5296. 
* gnu/packages/patches/pixman-CVE-2016-5296.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/xdisorg.scm (pixman)[replacement]: New field.
(pixman/fixed): New variable.
 2016-11-16 13:03:56 -05:00
宋文武
eb4b3e4bef
gnu: opensmtpd: Update to 6.0.2p1. 
* gnu/packages/mail.scm (opensmtpd): Update to 6.0.2p1.
[arguments]: Pass '--with-path-sock=/var/run' to #:configure-flags.
 2016-11-16 21:00:40 +08:00
Mark H Weaver
d55019136e
gnu: linux-libre: Update to 4.8.8. 
* gnu/packages/linux.scm (%linux-libre-version, %linux-libre-hash)
(linux-libre): Update to 4.8.8.
 2016-11-16 00:08:19 -05:00
Mark H Weaver
7d154949c9
gnu: linux-libre@4.4: Update to 4.4.32. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.32.
 2016-11-16 00:06:46 -05:00
Hartmut Goebel
d46491779e
gnu: python-awscli: fix inputs. 
* gnu/packages/python.scm (python-awscli): [inputs] change to
  [native-inputs].
 2016-11-15 22:36:22 +01:00
Hartmut Goebel
8fa6890b6c
gnu: python-botocore: fix inputs. 
* gnu/packages/python.scm (python-botocore): [inputs] change to
  [native-inputs].
 2016-11-15 22:36:21 +01:00
Hartmut Goebel
05e2e4cf00
gnu: python-pip: fix inputs. 
* gnu/packages/python.scm (python-pip): [inputs] change to
  [native-inputs].
 2016-11-15 22:36:21 +01:00
Hartmut Goebel
e62600feb6
gnu: python2-ipython: fix inputs. 
* gnu/packages/python.scm (python2-ipython): [inputs] change to
  [native-inputs].
 2016-11-15 22:36:20 +01:00
Hartmut Goebel
5b1416d983
gnu: python-betamax: fix inputs. 
* gnu/packages/python.scm (python-betamax): [inputs] change to
  [propagated-inputs].
 2016-11-15 22:36:19 +01:00
Hartmut Goebel
1b5241c515
gnu: python-scikit-learn: Remove useless property "python2-variant". 
The Python 2 packages does not change the definition, thus the
propery is useless.

* gnu/packages/python.scm (python-scikit-learn): [properties]:
  Remove  "python2-variant". (python2-scikit-learn): Remove
  now needless "strip-python2-variant".
 2016-11-15 22:36:18 +01:00
Hartmut Goebel
bac23672ee
gnu: python-tables: Remove python byte-code files from source. 
* gnu/packages/python.scm (python-tables)[source]: Add snippet.
 2016-11-15 22:36:18 +01:00
Hartmut Goebel
b9c8ccce04
gnu: python-flake8-2.2.4: Remove python byte-code files from source. 
* gnu/packages/python.scm (python-flake8-2.2.4)[source]: Add snippet.
 2016-11-15 22:36:17 +01:00
Hartmut Goebel
011271c769
gnu: python-flake8: Remove python byte-code files from source. 
* gnu/packages/python.scm (python-flake8)[source]: Add snippet.
 2016-11-15 22:36:09 +01:00
Hartmut Goebel
bac6816879
gnu: python-pytest-django: Remove needless propagated input "python-py". 
This is already propagated by python-pytest.

* gnu/packages/python.scm (python-pytest-django) [propagated-inputs]:
  Remove python-py.
 2016-11-15 22:32:02 +01:00
Hartmut Goebel
de5bc89093
gnu: python2-pbcore: Fix inputs: 
* gnu/packages/bioinformatics.scm (python2-pbcore) [inputs] change to
  [propagated-inputs]. [native-inputs]: Remove python-docutils, which
  comes with sphinx. [former propagated-inputs]: move all (which is only
  pyxb) to [inputs].
 2016-11-15 22:32:01 +01:00
Hartmut Goebel
54c85e12fd
gnu: python2-warpedlmm: Remove phase remove-bin-directory. 
This directory did contain contain wrappers for `nose`, which should not
be there anyway (since nose already was a native-input). The new
python build system no longer creates this directory, while the old one
did. (This difference is due to the bloody details of how packages are
installed.)

* gnu/packages/bioinformatics.scm (python2-warpedlmm)
  [modify-phases] Remove, since remove-bin-directory was the only
  modification here.
 2016-11-15 22:32:00 +01:00
Hartmut Goebel
3221207417
gnu: khal: Fix build. 
The old one was plain wrong and only worked by luck since the old
python build system did manipulate PYTHONPATH.

* gnu/packages/calendar.scm(khal)[phase manpage]: Use
  add-installed-pythonpath.
 2016-11-15 22:31:59 +01:00
Hartmut Goebel
632735f215
gnu: python-testlib: Remove useless self-defined phase "unpack". 
Unzipping is now done by standard-phase "unpack" automatically.

* gnu/packages/python.scm (python-testlib, python2-testlib)[phases] No longer
  replace "unpack".
 2016-11-15 22:31:59 +01:00
Hartmut Goebel
251ed7f2fe
gnu: python-sphinxcontrib-newsfeed: Remove needless input. 
* gnu/packages/python.scm (python-sphinxcontrib-newsfeed) [propagated-inputs]:
  Remove python-docutils, already porpagated by python-sphinx.
 2016-11-15 22:31:58 +01:00
Hartmut Goebel
38ceb106bd
gnu: python-nautilus: Correct inputs 
* gnu/packages/python.scm(python-nautilus, python2-nautilus):
  [propagated-inputs] remove python-graphql-core, python-graphql-relay,
  python-requests: not listed and already propagated by others. Remove
  pycparser: not listed, not used in source. Move python-nose2 to
  [native-inputs] (used for tests only).
 2016-11-15 22:31:57 +01:00
Hartmut Goebel
4e0969686c
gnu: python-freezegun: Correct input. 
* u/packages/python.scm(python-freezegun)[native-inputs] move
  python-dateutils-2 to [propagated-inputs].
 2016-11-15 22:31:56 +01:00
Hartmut Goebel
fd1d6de729
gnu: python-consul: Correct inputs. 
* gnu/packages/python.scm(python-consul)[native-inuts] move python-requests
  and python-six to [propagated-inputs].
 2016-11-15 22:31:55 +01:00
Hartmut Goebel
2c199b5527
gnu: python-prompt-toolkit: Correct inputs 
* gnu/packages/python.scm(python-prompt-toolkit)[native-inputs] move
  python-six to [propagated-inputs]. Remove now empty [native-inputs].
 2016-11-15 22:31:55 +01:00
Hartmut Goebel
d8ea5f2f27
gnu: python-responses: Correct inputs 
* gnu/packages/python.scm(python-responses)[native-inputs] move python-cookies
  to [propagated-inputs]
 2016-11-15 22:31:54 +01:00
Hartmut Goebel
a0a0985978
gnu: python-sphinxcontrib-programoutput: Remove needless input. 
This is an indirect requirement and propagated by python-sphinx already.

* gnu/packages/python.scm(python-sphinxcontrib-programoutput)
  [propagated-inputs]: Remove python-docutils.
 2016-11-15 22:31:53 +01:00
Hartmut Goebel
47c7dc4a3f
gnu: python-sphinx-repoze-autointerface: Remove needless input. 
This is an indirect requirement and propagated by python-sphinx already.

* gnu/packages/python.scm(python-sphinx-repoze-autointerface)
  [propagated-inputs]: Remove python-docutils.
 2016-11-15 22:31:52 +01:00
Hartmut Goebel
06f1d73ed4
gnu: python-celery: Remove needless inputs. 
These are indirect requirements and propagated by python-kombu.

* gnu/packages/python.scm(python-celery)[propagated-inputs] Remove python-amqp
  and python-anyjson.
 2016-11-15 22:31:51 +01:00
Hartmut Goebel
f7989b8bb0
gnu: Remove some outdated comments. 
These comments were about setuptools used at runtime for pkg_resources.

* gnu/packages/python.scm: Remove some outdated comments.
 2016-11-15 22:31:50 +01:00
Hartmut Goebel
7ba07edfb1
gnu: python-tox: Update FIXME comments. 
* gnu/packages/python.scm(python-tox)[arguments]: Update FIXME
  comment. [inputs]: Add FIXME comment.
 2016-11-15 22:31:49 +01:00
Hartmut Goebel
8322749a1c
gnu: python-urllib3: update comment. 
* gnu/packages/python.scm(python-urllib3)[propagated-inputs]: Update comment.
 2016-11-15 22:31:49 +01:00
Hartmut Goebel
b9fc496ff6
gnu: python-wsgi-intercept: Correct inputs. 
* gnu/packages/python.scm(python-wsgi-intercept): [native-inputs]: move
  python-six to [propagated-inputs].  [propagated-inputs] move
  python-httplib2, python-requests to [native-inputs].
 2016-11-15 22:31:48 +01:00
Hartmut Goebel
a5333f7c61
gnu: python-websocket-client: Correct inputs. 
* gnu/packages/python.scm (python-websocket-client)[native-inputs] change to
  [propagated-inputs], remove a wrong comment.
 2016-11-15 22:31:47 +01:00
Hartmut Goebel
fd8e23b7b3
gnu: python-zope-security: Correct inputs. 
* gnu/packages/python.scm(python-zope-security)[native-inputs] New element,
  move python-zope-component, python-zope-configuration, python-zope-location,
  python-zope-testrunner, python-zope-testing here.
 2016-11-15 22:31:46 +01:00
Hartmut Goebel
861f70c9da
gnu: python-configobj: Correct inputs. 
* gnu/packages/python.scm(python-configobj)[native-inputs] change to
  [propagated-inputs].
 2016-11-15 22:31:46 +01:00
Hartmut Goebel
d27f176a72
gnu: python-zope-location: Correct inputs. 
* gnu/packages/python.scm(python-zope-location)[native-inputs] change to
  [propagated-inputs].
 2016-11-15 22:31:45 +01:00
Hartmut Goebel
38d480a8a6
gnu: python-zope-interface: Correct inputs. 
* gnu/packages/python.scm(python-zope-interface)[propagated-inputs] change to
  [native-inputs].
 2016-11-15 22:31:44 +01:00
Hartmut Goebel
2887700e4d
gnu: python-pathpy: Build documentation. 
* gnu/packages/python.scm (python-pathpy, python2-pathpy)
  [output] Add output "doc".
  [native-inputs]: Add python-sphinx and python-rst.linker
  [build-doc], [install-doc]: New build phases.
 2016-11-15 22:31:43 +01:00
Hartmut Goebel
fe94cf0cdd
gnu: Add python-rst.linker, python2-rst.linker. 
* gnu/packages/python.scm (python-rst.linker, python2-rst.linker): New
  variables.
 2016-11-15 22:31:43 +01:00
Hartmut Goebel
213d1745c6
gnu: python-numpydoc: Correct inputs. 
* gnu/packages/python.scm (python-numpydoc, python-numpydoc)
  [native-inputs]: Remove python-docutils. Move python-shpinx to
  [propagated-inputs].
 2016-11-15 22:31:42 +01:00
Hartmut Goebel
cf8124b017
gnu: python-redis: Remove unused input. 
* gnu/packages/python.scm (python-redis, python2-redis) Comment out
  [native-inputs] since these are used only for running tests, which
  is disabled since it requires a Redis server.
 2016-11-15 22:31:41 +01:00
Hartmut Goebel
1273359455
gnu: python2-scikit-image: Remove needless native-input and inheritance. 
Remove last additional [native-inputs] python-mock, thus there is no
need to inherit python-scikit-image package. Simply use
package-with-python2.

* gnu/packages/python.scm: (python-scikit-image): [properties]: Remove
  python2-variant. (python2-scikit-image) Use simply
  "package-with-python2" after removing last [native-inputs] python-mock.
 2016-11-15 22:31:40 +01:00
Hartmut Goebel
ddd1dc3d2d
gnu: python2-scikit-image: Remove needless propagated-input. 
* gnu/packages/python.scm: (python2-scikit-image)
  [propagated-inputs]: Remove python-pytz, it does not occur anywhere in
  the source.
 2016-11-15 22:31:39 +01:00
Hartmut Goebel
b83e23337b
gnu: python-scikit-image: Correct inputs. 
* gnu/packages/python.scm: (python-scikit-image, python2-scikit-image)
  [propagated-inputs]: Move python-numpy and python-six to [native-inputs].
  Add comment.
 2016-11-15 22:31:39 +01:00
Hartmut Goebel
9fbe7b2bca
gnu: python-blinker: No longer disable tests. 
The package does not provide tests, but there is no need to disable them.
Having them enabled allows running them if some newer version may provide
tests.

* gnu/package/python.scm (python-blinker, python2-blinker):
  [arguments]: Remove.
 2016-11-15 22:31:38 +01:00
Hartmut Goebel
7c88bcf4bb
gnu: python-feedgenerator: Remove python byte-code files from source. 
* gnu/packages/python.scm (python-feedgenerator, python2-feedgenerator)
  [source]: Add snippet.
 2016-11-15 22:31:37 +01:00
Hartmut Goebel
f052ec9a50
gnu: python-joblib: Add comment. 
* gnu/packages/python.scm (python-joblib): Add comment.
 2016-11-15 22:31:36 +01:00
Hartmut Goebel
6aa5f1ca24
gnu: python-joblib: Remove python byte-code files from source. 
* gnu/packages/python.scm (python-joblib, python2-joblib)[source]:
  Add snippet.
 2016-11-15 22:31:36 +01:00
Hartmut Goebel
bb06aa3446
gnu: python-oauthlib, python-oauthlib2: Correct inputs. 
* gnu/packages/python.scm (python-oauthlib) [propagated-inputs] Move all to
  [native-inputs]. [native-inputs]: Remove python-mock, python-coverage.
  (python2-oauthlib)[native-inputs]: Add python2-mock.
 2016-11-15 22:31:35 +01:00
Hartmut Goebel
130fe99410
gnu: python-pyjwt: Add missing inputs and enable test-suite. 
* gnu/packages/python.scm (python-pyjwt) [native-inputs]: Add
  python-pytest and python-pytest-cov. [arguments]. Remove.
 2016-11-15 22:31:34 +01:00
Hartmut Goebel
f78e1c27ef
gnu: python-cov-core: Fix imports. 
* gnu/packages/python.scm (python-cov-core) [inputs]: change
  to [propagated-inputs].
 2016-11-15 22:31:33 +01:00
Hartmut Goebel
25b2c47d75
gnu: python-statsmodels: Fix build 
* gnu/packages/statistics.scm (python-statsmodels): [check] set
  PYTHONPATH prior to running tests.
 2016-11-15 22:31:33 +01:00
Hartmut Goebel
d5e41cf28c
gnu: pytest-mock: remove needless propagated input "python-py". 
This is not listed as an requirement and is already propagated by
python-pytest.

* gnu/packages/python.scm (python-pytest-mock, python2-pytest-mock):
  [propagated-inputs]: Remove python-py.
 2016-11-15 22:31:32 +01:00
Hartmut Goebel
8e73d3baab
gnu: python-testscenarios: remove needless input "mimetools". 
This does not occur in the source.

* gnu/packages/python.scm (python-testscenarios, python2-testscenarios)
  [propagated-inputs]: Remove python-mimeparse.
 2016-11-15 22:31:31 +01:00
Hartmut Goebel
e0ed457944
gnu: python-setuptools: remove pre-built binaries from source. 
These are used to build self-extracting installers for Windows.

* gnu/packages/python.scm (python-setuptools, python2-setuptools) [source]:
  Add snippet to delete *.exe files.
 2016-11-15 22:31:30 +01:00
Hartmut Goebel
c4516ad206
gnu: python-pytest-xdist: Remove needless input python-apipkg. 
* gnu/packages/python.scm (python-pytest-xdist): Remove input
  python-apipkg.
 2016-11-15 22:31:29 +01:00
Hartmut Goebel
b52ad3714a
gnu: python-subunit, python-testrepository: Fix inputs 
* gnu/packages/python.scm (python-subunit, python2-subunit):
  [propagated-inputs]:: Add python-extras, remove python-testtools, move
  python-testscenarios to [native-inputs].  (python-testrepository,
  python2-testrepository): [native-inputs] move python-fixtures and
  python-subunit to [propagated-inputs]
 2016-11-15 22:31:29 +01:00
Hartmut Goebel
521b77729e
gnu: python-scripttest: Correct inputs. 
python-pytest is only required for testing, not at run-time.

* gnu/packages/python.scm (python-singledispatch, python2-singledispatch):
  [propagated-inputs] Move python-pytest to [native-inputs].
 2016-11-15 22:31:28 +01:00
Hartmut Goebel
abcc7a0eb9
gnu: python-pandas: Fix build. 
* gnu/packages/python.scm (python-pandas): Add python-cython to
  native-inputs.
 2016-11-15 22:31:27 +01:00
Hartmut Goebel
e116d100fd
gnu: openstack: Correct inputs. 
* gnu/packages/openstack.scm (python-os-testr) Propagate input
  python-subunit, change all other inputs to native-inputs.
  (python-mox3): Remove needless input python-six.
  (python-stevedore, python-requests-mock): Move python-pbr to
  native-inputs.
 2016-11-15 22:31:27 +01:00
Hartmut Goebel
48160559a1
gnu: thefuck: Fix build. 
Requires setuptools >= 17.1 due to some features used, while our
python currently only includes 12.0.

* gnu/packages/admin.scm (thefuck): Add setuptools to native-inputs.
 2016-11-15 22:31:26 +01:00
Hartmut Goebel
a08a835034
gnu: vdirsyncer: Fix build by setting correct PYTHONPATH. 
For thus, use add-installed-pythonpath.

* gnu/packages/dav.scm (vdirsyncer): set PYTHONPATH using
  add-installed-pythonpath.
 2016-11-15 22:31:25 +01:00
Hartmut Goebel
eee5cd0440
gnu: python-ipython: Fix build. 
* gnu/packages/python.scm (python-ipython, python2-ipython) [check,
  install-doc] set PYTHONPATH prior to running tests.
 2016-11-15 22:31:24 +01:00
Hartmut Goebel
d548e6aa06
gnu: python-scipy: Fix build. 
* gnu/packages/python.scm (python-scipy) Use add-installed-pythonpath.  Add
  dummy newlines character to string to make emacs happy.
 2016-11-15 22:31:23 +01:00
Hartmut Goebel
ca33a3ad97
gnu: python-matplotlib: Fix build. 
* gnu/packages/python.scm (python-matplotlib, python2-matplotlib): Correct
  inputs. [install-doc] set PYTHONPATH prior to building docs.
 2016-11-15 22:31:23 +01:00
Hartmut Goebel
2efabc5589
gnu: python-numpy-bootstrap, python-numpy: Fix build. 
* gnu/packages/python.scm (python-numpy-bootstrap): Correct inputs, use
  modify-phases, add dummy newlines character to string to make emacs happy,
  set PYTHONPATH prior to running tests. (python-numpy): propagate inputs, set
  PYTHONPATH prior to building docs.
 2016-11-15 22:31:22 +01:00
Hartmut Goebel
9e8c6a37db
gnu: python-fonttools: Remove intervening directory in site-packges. 
* gnu/packages/python.scm (python-fonttools): Add phase patch-setuppy.
 2016-11-15 22:31:21 +01:00
Hartmut Goebel
b72ac1b54b
gnu: python2-pysnptools: Correct inputs. 
dateutil, pytz, and six do not occur in the code.

Remove python-dateutil, python-pytz, python-six from inputs;
Move python-cython to native-inputs; move python-pandas to
propagated-inputs.
 2016-11-15 22:31:21 +01:00
Hartmut Goebel
e408ffc302
gnu: python-zope-testing: Remove needless input. 
* gnu/packages.python.scm (python-zope-testing): Remove
  python-zope-interface from native-imports.
 2016-11-15 22:31:20 +01:00
Hartmut Goebel
47f77210fc
gnu: python-zope-schema: Add missing inputs. 
* gnu/packages.python.scm (python-zope-schema): Add python-coverage and
  python-nose to native-inputs.
 2016-11-15 22:31:19 +01:00
Hartmut Goebel
05c2fd3685
gnu: python-pytest-flakes: Fix build. 
* python.scm (python-pytest-flakes): Set PYTHONPATH prior to running tests.
 2016-11-15 22:31:18 +01:00
Hartmut Goebel
6151120a71
gnu: python-pillow: Fix build. 
* gnu/packages/python.scm (python-pillow)[check-installed]: Add
  installed site-package to PYTHONPATH.
 2016-11-15 22:31:17 +01:00
Hartmut Goebel
5e1c9d242a
gnu: python-singledispatch: correct inputs. 
python-six is only required for conversion, not at run-time

* gnu/packages/python.scm (python-singledispatch, python2-singledispatch):
  [inputs] Move python-six to [native-inputs].
 2016-11-15 22:31:17 +01:00
Hartmut Goebel
d2a8db92fe
gnu: python-pbr: Rework bootstrapping. 
For breaking the cyclic build, formerly a separate (older) version was used
for bootstrapping.  Now we use the same version just without tests and without
test dependencies.

* gnu/packages/python.scm (python-pbr-0.11, python2-pbr-0.11):
  replace by … (python-pbr-minimal, python2-pbr-minimal).
  (python-pbr) inherit from python-pbr-minimal, adding the requirements for
  testing and building the documentation.
  (python-fixtures) [native-inputs] Use python-pbr-minimal here.
  (python-testrepository): [native-inputs] Add it here, it was a missing
  dependency.
 2016-11-15 22:31:16 +01:00
Hartmut Goebel
b2e66edf52
gnu: python-testrepositoryfixture: Correct inputs. 
python-fixtures is required only for building.

* gnu/packages/python.scm (python-testrepository) [propagated-inputs] move
  python-fixtures to [native-inputs].
 2016-11-15 22:31:15 +01:00
Hartmut Goebel
424f0a4175
gnu: python-fixture: Enable tests. 
* gnu/packages/python.scm (python-fixtures) [arguments] remove
  keyword `#:tests?`.
 2016-11-15 22:31:14 +01:00
Hartmut Goebel
ae92caddc5
gnu: python-fixture: Correct inputs. 
python-pbr is required only for building.

* gnu/packages/python.scm (python-fixtures) [propagated-inputs] move
  python-pbr-0.11 to [native-inputs].
 2016-11-15 22:31:13 +01:00
Hartmut Goebel
6986669012
gnu: python-hdf5: Correct inputs. 
According to setup.py python-six is requried at run-time, thus has to be a
propagated input.

* gnu/packages/python.scm (python-hdf5) [inputs]: Move `python-six` to
  [propagated-inputs].
 2016-11-15 22:31:12 +01:00
Hartmut Goebel
9820a02858
gnu: python-h5py: Remove needless "python2-variant" property. 
* gnu/packages/python.scm (python-h5py) [python2-variant]: Remove
  property. (python2-h5py): Don't strip property "strip-python2-variant".
 2016-11-15 22:31:12 +01:00
Hartmut Goebel
d9a6e221e2
gnu: python-ccm: Update synopsis and description. 
* gnu/packages/python.scm (python-ccm): Update synopsis and description.
 2016-11-15 22:31:11 +01:00
Hartmut Goebel
e165f137d8
gnu: python-ccm: Add missing input python-psutil. 
* gnu/packages/python.scm (python-ccm) [propagated-inouts]: Add
  python-psutil.
 2016-11-15 22:31:10 +01:00
Hartmut Goebel
ef7451131a
gnu: python-sphinx-rtd-theme: Remove inputs. 
This package is a plugin for python-sphinx, it does not require python-sphinx
nor docutils, but is an add-on for python-sphinx and should not be installed
by it's own.

* gnu/packages/python/.scm (python-sphinx-rtd-theme)[inputs]: Remove.
 2016-11-15 22:31:09 +01:00
Hartmut Goebel
ce40b38395
gnu: python-pytest-cov: Use upstream options for testing. 
* gnu/packages/python.scm (python-pytest-cov): Replace phase "check"
  by one passing the options found in upstream's tox.ini-file
  to "python setup.py check".
 2016-11-15 22:31:08 +01:00
Hartmut Goebel
b3e8b4bd0f
gnu: scons: Do not use setuptools for building. 
* gnu/packages/python.scm (scons): Set "#:use-setuptools" to #f.
 2016-11-15 22:31:07 +01:00
Hartmut Goebel
f2516de2fc
gnu: Fix python inputs, part 7: Ensure python-cython is a native-input. 
* gnu/packages/audio.scm (python-pyliblo): [inputs] Move python-cyton to
  [native-inputs].
* gnu/packages/bioinformatics.scm (python2-pybedtools): dito.
* gnu/packages/music.scm (beast, python-pyportmidi): dito.
* gnu/packages/python.scm (python2-fastlmm, python-kivy): dito.
 2016-11-15 22:31:07 +01:00
Hartmut Goebel
328bb95d35
gnu: Fix python inputs, part 6: some inputs become native-inputs. 
This patch handles the inputs which are native-inputs almost always like nose,
sphinx, and pytest.

* gnu/packages/python.scm
  (python-jsonschema, python-numpydoc, python-mccabe, python-mistune,
  python-ptyprocess, python-webob, python-apipkg, python-flake8-2.2.4)[inputs]
  change to [native-inputs].
  (python-flake8, tox) Likewise, add a comment.
  (python-scikit-learn, python-numpy)[native-inputs] New element, move
  python-nose here.
  (python2-kombu)[inputs] change to [native-inputs], use python-kombu's
  package-native-inputs.
 2016-11-15 22:31:06 +01:00
Hartmut Goebel
482d95918e
gnu: Fix python inputs, part 5: some inputs become propagated-inputs 
* gnu/packages/openstack.scm
  (python-os-client-config)[inputs] change to
  [native-inputs]. [propagated-inputs]: New element, move python-appdirs,
  python-pyyaml here.
  (python-git-review)[propagated-inputs]: New element, move python-requests
  here.
* gnu/packages/python.scm
  (python-rpy2)[propagated-inputs]: New element, move python-six here.
  (python-xcffib)[inputs] move python-six to [propagated-inputs].
  (python-flake8)[propagated-inputs]: New element, move python-pep8,
  python-pyflakes, python-mccabe here.
  (python-flake8-2.2.4)[propagated-inputs]: New element, move python-pep8,
  python-pyflakes, python-mccabe here.
  (python-pytest)[propagated-inputs]: New element, move python-py here.
  (python-tox)[propagated-inputs]: New element, move all inputs except of
  python-pytest here.
  (python-botocore)[propagated-inputs]: New element, move python-dateutil,
  python-docutils, python-jmespath here.
  (awscli)[propagated-inputs]: New element, move python-colorama,
  python-botocore, python-s3transfer, python-docutils, python-rsa here.
  (python-mako)[propagated-inputs]: New element, move python-markupsafe here.
* gnu/packages/qemu.scm(python-libvirt)[propagated-inputs]: New element, move
  python-lxml here.
 2016-11-15 22:31:05 +01:00
Hartmut Goebel
dae73d9b9a
gnu: Fix python inputs, part 3: all native-inputs become propagated-inputs. 
This patch contains the changes in python.scm where all [native-inputs]
are changed to [propagated-inputs].

* gnu/packages/python.scm.scm (python-feedgenerator): All [native-inputs] are
  changed to [propagated-inputs].
 2016-11-15 22:31:04 +01:00
Hartmut Goebel
e7881f3db4
gnu: Fix python inputs, part 2: all inputs become native-inputs. 
This patch contains the changes where all [inputs] are changed to
[native-inputs].

* gnu/packages/python.scm (python-pytest, python-fixtures,
  python-testrepository, python-virtualenv): All [inputs] are changed to
  [native-inputs].
* gnu/packages/openstack.scm (python-bandit, python-debtcollector,
  python-hacking, python-tempest-lib, python-oslo.config, python-oslo.context,
  python-oslo.i18n, python-oslo.log, python-oslo.serialization,
  python-oslosphinx, python-oslotest, python-oslo.utils): Likewise.
 2016-11-15 22:31:03 +01:00
Hartmut Goebel
f22efa0152
gnu: Fix python inputs, part 1: all inputs become propagated-inputs. 
This patch contains the changes where all [inputs] are changed to
[propagated-inputs]

* gnu/packages/python.scm (python-passlib, python-paramiko, python-ccm,
  python-babel, python-keyring python-pandas, python-tzlocal,
  python-parse-type, python-nose2, python-pytest, python-pytest-mock,
  python-pytest-xdist, python-scripttest, python-testtools, python-pytest-cov,
  python-testscenarios, python-pbr-0.11, python-oauthlib, python-jinja2,
  python-sphinx, python-tzlocal, python-bugz, python2-pytest-mock, behave,
  pelican, sqlalchemy-utils, python-pygridtools, python-urwidtrees,
  python-tornado, python2-tornado, python-debian, python-execnet,
  python-pytest-cache, pytest-localserver, python-clint, python-rply,
  python-hy, python-rauth, python-rsa, python-celery, python-vobject, s3cmd,
  python-prompt-toolkit, ptpython, python-requests-oauthlib, python-stem,
  python-binaryornot, python2-binaryornot, python-nltk, python-pymongo,
  python-schematics, python-url, python2-url, python-freezegun,
  python-glances, python-graphql-core, python-graphql-relay, python-graphene,
  python-nautilus, python-s3transfer): All [inputs] become
  [propagated-inputs].
* gnu/packages/bioinformatics.scm (python-biopython): Likewise.
* gnu/packages/django.scm (pytest-django): Likewise.
* gnu/packages/mail.scm (python-mailmanclient): Likewise.
* gnu/packages/password-utils.scm (python-bcrypt): Likewise.
* gnu/packages/propbuf.scm (python-protobuf): Likewise.
* gnu/packages/rdf.scm (python-rdflib): Likewise.

SQACH all become propagated
 2016-11-15 22:31:03 +01:00
Hartmut Goebel
b41a05ce49
gnu: Remove work-arounds for bug 20765 (ensure uncompressed eggs). 
Bug 20765 is solved since we build all Python packages using
option "--single-version-externally-managed".

* gnu/packages/bioinformatics.scm (pbtranscript-tofu): Remove
  configure-flags. (pepr): remove phase "disable-egg-generation".
* gnu/packages/pdf.scm (reportlab): Remove configure-flags.
* gnu/packages/python.scm (python-sphinx-rtd-theme, python2-elib.intl,
  python-pkgconfig, python-pytest-pep8, python-pytest-flakes): Remove
  configure-flags. (python-pillow) remove phase
  "disable-egg-generation". (python-libarchive-c) Remove patching
  setup.cfg.
* gnu/packages/statistics.scm (python-patsy): remove phase
  "prevent-generation-of-egg-archive".
* gnu/packages/tls.scm (python-acme): remove phase
  "disable-egg-compression".
* gnu/packages/tor.scm (onionshare): Remove configure-flags.
 2016-11-15 22:31:02 +01:00
Hartmut Goebel
d8013ee221
gnu: Remove needless inputs python-pip and python2-pip. 
This is installed together with Python 3 anyway and for our build
of Python 2.

* gnu/packages/python.scm (python2-fixtures): [inputs] remove "python-pip".
* gnu/packages/pdf.scm (python2-reportlab): [native-inputs] remove
  "python2-pip". (python-reportlab)[properties]: remove "python2-variant".
 2016-11-15 22:31:01 +01:00
Hartmut Goebel
f210e94432
gnu: Remove python-setuptools and python2-setuptools from inputs (part 4b) 
This patch contains the changes in python.scm where
setuptools are used in an inherited package and removing this input also
removes the need for inheriting the package. This is the case if adding
setuptools in the inherited packge was the only change.

Change this to not inherit and remove the new needless call to
"strip-python2-variant (where applicable).

* gnu/packages/python.scm.scm: Remove inheriting Python 2 packages inheriting
  from a Python 3 package if adding python-setuptools respective
  python2-setuptools to [inputs], [native-inputs] and [propagated-inputs] have
  been the sole reason for inheriting. Remove now needless [properties]
  "python2-variant" where applicable.
  (python2-lockfile, python2-keyring, python2-dateutil-2,
  python2-parsedatetime, python2-pandas, python2-pyicu, python2-pytest-cov,
  python2-pytest-runner, python2-pytest-xdist, python2-cov-core,
  python2-itsdangerous, python2-numexpr, python2-q, python2-sqlalchemy-utils,
  python2-alembic, python2-beautifulsoup4, python2-msgpack, python2-ipaddress,
  python2-atomicwrites, python2-apipkg, python2-execnet, python2-pytest-cache,
  python2-wtforms, python2-mako, python2-waitress, python2-wsgiproxy2,
  python2-pyquery, python2-webtest, python2-translitcodec, python2-editor,
  python2-sphinxcontrib-programoutput, python2-psycopg2, python2-vobject,
  python2-flask, python2-cookies, python2-responses, python2-future,
  python2-ply, python2-wcwidth, python2-prompt-toolkit, python2-jedi,
  python2-requests-oauthlib, python2-pyserial, python2-nltk, python2-pymongo,
  python2-sh, python2-schematics, python2-publicsuffix, python2-publicsuffix2,
  python2-url, python2-freezegun, python2-cachecontrol, python2-lit,
  python2-pytest-pep8, python2-pytest-flakes, python2-glances,
  python2-betamax, python2-file, python2-flask-babel, python2-furl,
  python2-imagesize python2-orderedmultidict, python2-pycodestyle,
  python2-vcversioner, python2-graphql-core, python2-graphql-relay,
  python2-validictory): Remove neesless input "python2-setuptools", don't
  inherit, don't call strip-python2-variant.
  (python-lockfile, python-keyring, python-dateutil-2, python-parsedatetime,
  python-pandas, python-pyicu, python-pytest-cov, python-pytest-runner,
  python-pytest-xdist, python-cov-core, python-itsdangerous, python-numexpr,
  python-q, python-sqlalchemy-utils, python-alembic, python-beautifulsoup4,
  python-msgpack, python-ipaddress, python-atomicwrites, python-apipkg,
  python-execnet, python-pytest-cache, python-wtforms, python-mako,
  python-waitress, python-wsgiproxy2, python-pyquery, python-webtest,
  python-translitcodec, python-editor, python-sphinxcontrib-programoutput,
  python-psycopg2, python-vobject, python-flask, python-cookies,
  python-responses, python-future, python-ply, python-wcwidth,
  python-prompt-toolkit, python-jedi, python-requests-oauthlib,
  python-pyserial, python-nltk, python-pymongo, python-sh, python-schematics,
  python-nltk, python-publicsuffix2, python-cachecontrol, python-lit,
  python-pytest-pep8, python-pytest-flakes, python-glances, python-betamax,
  python-file, python-flask-babel, python-furl, python-imagesize,
  python-orderedmultidict, python-pycodestyle, python-vcversioner,
  python-graphql-core, python-graphql-relay, python-validictory): Remove
  "python2-variant" property.
 2016-11-15 22:29:00 +01:00
Hartmut Goebel
5c31f4aa7c
gnu: Remove python-setuptools and python2-setuptools from inputs (part 4a) 
This patch contains the changes for all modules beside python.scm where
setuptools are used in an inherited package and removing this input also
removes the need for inheriting the package. This is the case if adding
setuptools in the inherited package was the only change.

Change this to not inherit and remove the new needless call to
"strip-python2-variant (if applicable).

* gnu/packages/bioinformatics.scm (python-biopython, python2-biopython,
  python-twobitreader, python2-twobitreader,
  python-plastid, python2-plastid,
  python2-pybigwig,
  python2-screed,
  sra-tools): No longer "inherit" Python 2 packages
  inheriting from a Python 3 package if the sole reason for inheriting was
  adding python-setuptools respective python2-setuptools to [inputs],
  [native-inputs] or [propagated-inputs]. Remove now needless [properties]
  "python2-variant" where applicable.
* gnu/packages/django.scm (python-pytest-django, python2-pytest-django,
  python-django-filter, python2-django-filter): Likewise.
* gnu/packages/gnupg.scm (python2-pygpgme): Likewise.
* gnu/packages/mail.scm (python-mailmanclient, python2-mailmanclient):
  Likewise.
* gnu/packages/mpd.scm (python-msp, python2-mpd2): Likewise.
* gnu/packages/music.scm (python-pylast, python2-pylast): Likewise.
* gnu/packages/openstack.scm (python-requests-mock, python2-requests-mock,
  python2-git-review): Likewise.
* gnu/packages/password-utils.scm (python2-bcrypt): Likewise.
* gnu/packages/protobuf.scm (python-protobuf, python2-protobuf): Likewise.
* gnu/packages/statistics.scm (python-patsy, python2-patsy): Likewise.
* gnu/packages/web.scm (python2-feedparser): Likewise.
 2016-11-15 22:28:59 +01:00
Hartmut Goebel
00e10c6e67
gnu: Remove python-setuptools and python2-setuptools from inputs (part 3) 
This patch contains the changes where setuptools are used in an inherited
package and removing this input keeps the need for inheriting the package.

* gnu/packages/bioinformatics.scm (python2-biom-format): Remove
  python-setuptools respective python2-setuptools from [inputs],
  [native-inputs] and [propagated-inputs] in Python 2 packages inheriting from
  a Python 3 package.
* gnu/packages/python.scm (python2-pytest-mock,
  python2-oauthlib,
  python2-seaborn,
  python2-tornado,
  python2-terminado,
  python2-rauth,
  python2-anyjson,
  python2-amqp,
  python2-kombu,
  python2-billiard,
  python2-celery,
  python2-jellyfish,
  python2-binaryornot,
  python2-natsort,
  python2-graphene): Likewise.
* gnu/packages/statistics.scm (python2-statsmodels): Likewise.
 2016-11-15 22:28:38 +01:00
Hartmut Goebel
f3b98f4fec
gnu: Remove python-setuptools and python2-setuptools from inputs (part 2) 
This patch contains the changes where removing setuptools from the inputs
affected some code-lines beside.

* gnu/packages/admin.scm (ansible): Remove all [inputs], [native-inputs] and
  [propagated-inputs] where python-setuptools or python2-setuptools are the
  sole entries. Remove python-setuptools and python2-setuptools listed on a
  line by its own from [inputs], [native-inputs] and [propagated-inputs].

* gnu/packages/backup.scm (duplicity): Likewise.
* gnu/packages/bioinformatics.scm (bamm, python2-pybedtools,
  python2-bx-python, python2-dendropy, python-pysam, python2-pysam, clipper,
  crossmap, cutadapt, deeptools, grit, idr, python2-warpedlmm,
  pbtranscript-tofu, seqmagick): Likewise.
* gnu/packages/docbook.scm (dblatex): Likewise.
* gnu/packages/freedesktop.scm (python-pyxdg, python2-pyxdg): Likewise.
* gnu/packages/lirc.scm (python2-lirc): Likewise.
* gnu/packages/mp3.scm (eyed3): Likewise.
* gnu/packages/nutrition.scm (gourmet): Likewise.
* gnu/packages/openstack.scm (python-hacking, python2-hacking,
  python-os-testr, python2-os-testr,
  python-stevedore, python2-stevedore,
  python-tempest-lib, python2-tempest-lib,
  python-oslo.log, python2-oslo.log,
  python-keystoneclient, python2-keystoneclient): Likewise.
* gnu/packages/password-utils.scm (assword): Likewise.
* gnu/packages/python.scm (python-passlib, python2-passlib,
  python-babel, python2-babel,
  python-parse-type,
  python-pytest, python2-pytest,
  python-scripttest, python2-scripttest,
  python-testtools, python2-testtools,
  python-testscenarios, python2-testscenarios,
  python-subunit, python2-subunit,
  python-pbr-0.11,
  python-pbr, python2-pbr,
  python-testrepository, python2-testrepository,
  behave,
  python-wheel, python2-wheel,
  python-requests, python2-requests,
  python-jsonschema, python2-jsonschema,
  python-pyjwt, python2-pyjwt,
  python-virtualenv, python2-virtualenv,
  python-jinja2, python2-jinja2,
  python-joblib, python2-joblib,
  python-sphinx, python2-sphinx,
  python-feedgenerator, python2-feedgenerator,
  python-scikit-image, python2-scikit-image,
  python-redis, python2-redis,
  python2-fastlmm,
  python-numpydoc, python2-numpydoc,
  python-matplotlib, python2-matplotlib,
  python2-pysnptools,
  python-rpy2, python2-rpy2,
  python-pillow, python2-pillow,
  python-pycparser, python2-pycparser,
  python-cffi, python2-cffi,
  python-cairocffi, python2-cairocffi,
  python-drmaa, python2-drmaa,
  python-pathpy, python2-pathpy,
  python-simplegeneric, python2-simplegeneric,
  python-ipython, python2-ipython,
  python-apsw, python2-apsw,
  python-lxml, python2-lxml,
  python-networkx, python2-networkx,
  python-pyzmq, python2-pyzmq,
  python-mccabe, python2-mccabe,
  python-mccabe-0.2.1,
  python-flake8, python2-flake8,
  python-flake8-2.2.4,
  python-mistune, python2-mistune,
  python-ptyprocess, python2-ptyprocess,
  python-llfuse, python2-llfuse,
  python-webob, python2-webob,
  python-xlrd, python2-xlrd,
  python-tables, python2-tables,
  python-pip, python2-pip,
  python-libarchive-c, python2-libarchive-c,
  python-docopt, python2-docopt,
  python-pyrfc3339, python2-pyrfc3339,
  python-configobj, python2-configobj,
  python-clint, python2-clint,
  python-rply, python2-rply,
  python2-rpython,
  python-widgetsnbextension, python2-widgetsnbextension
  jupyter,
  python-jupyter-console, python2-jupyter-console,
  python-hy, python2-hy,
  python-urllib3, python2-urllib3,
  python-rsa, python2-rsa,
  python-tox, python2-tox,
  python2-hypothesis,
  python-paste, python2-paste,
  python-pastescript, python2-pastescript,
  python2-unicodecsv,
  python-pkgconfig, python2-pkgconfig,
  python2-rope,
  python-sqlparse, python2-sqlparse,
  python-gevent, python2-gevent,
  python-tabulate, python2-tabulate,
  python-arrow, python2-arrow,
  python-cleo, python2-cleo,
  python-fake-factory, python2-fake-factory,
  ptpython): Likewise.
* gnu/packages/rdf.scm (python-rdflib, python2-rdflib): Likewise.
* gnu/packages/terminals.scm (asciinema): Likewise.
* gnu/packages/version-control.scm (git-annex-remote-hubic): Likewise.
* gnu/packages/xdisorg.scm (arandr): Likewise.
 2016-11-15 22:27:31 +01:00
Hartmut Goebel
5d85493284
gnu: Remove python-setuptools and python2-setuptools from inputs (part 1b) 
This patch contains the changes in all modules beside python.scm where
removing setuptools from the inputs could be achieved by removing complete
lines.

* gnu/packages/admin.scm (graphios, thefuck): Remove all [inputs],
  [native-inputs] and [propagated-inputs] where python-setuptools or
  python2-setuptools are the sole entries. Remove python-setuptools and
  python2-setuptools listed on a line by its own from [inputs],
  [native-inputs] and [propagated-inputs].
* gnu/packages/backup.scm (rdiff-backup): Likewise.
* gnu/packages/bioinformatics.scm (htseq, macs, python2-pbcore, rseqc,
  multiqc): Likewise.
* gnu/packages/django.scm (python-django, python2-django,
  python-django-simple-math-captcha, python2-django-simple-math-captcha):
  Likewise.
* gnu/packages/docker.scm (python-docker-py, docker-compose): Likewise.
* gnu/packages/game-development.scm (python-pygame): Likewise.
* gnu/packages/key-mon.scm (key-mon): Likewise.
* gnu/packages/mail.scm (khard): Likewise.
* gnu/packages/music.scm (beets, python2-pyechonest): Likewise.
* gnu/packages/openstack.scm (python-bandit, python2-bandit,
  python-debtcollector, python2-debtcollector,
  python-mox3, python2-mox3,
  python-os-client-config, python2-os-client-config,
  python-oslo.config, python2-oslo.config,
  python-oslo.context, python2-oslo.context,
  python-oslo.i18n, python2-oslo.i18n,
  python-oslo.serialization, python2-oslo.serialization,
  python-oslosphinx, python2-oslosphinx,
  python-oslotest, python2-oslotest,
  python-oslo.utils, python2-oslo.utils,
  python-swiftclient, python2-swiftclient): Likewise.
* gnu/packages/pdf.scm (pdfposter): Likewise.
* gnu/packages/tls.scm (python-acme, python2-acme): Likewise.
 2016-11-15 21:58:44 +01:00
Hartmut Goebel
f54d6bacbf
gnu: Remove python-setuptools and python2-setuptools from inputs (part 1a) 
This patch contains the changes in python.scm where removing setuptools from
the inputs could be achieved by removing complete lines.

* gnu/packages/python.scm (python-psutil, python2-psutil,
  python-py-bcrypt, python2-py-bcrypt,
  python-paramiko, python2-paramiko,
  python-httplib2, python2-httplib2,
  python-ecdsa, python2-ecdsa,
  python-ccm, python2-ccm,
  python2-backport-ssl-match-hostname,
  python-pycrypto, python2-pycrypto,
  python-six, python2-six,
  python-dateutil, python2-dateutil,
  python2-mechanize,
  python-extras, python2-extras,
  python-mimeparse, python2-mimeparse,
  python-nose, python2-nose,
  python-nose2, python2-nose2,
  python-unittest2, python2-unittest2,
  python-py, python2-py,
  python-testresources, python2-testresources,
  python-fixtures-0.3.16,
  python-fixtures, python2-fixtures,
  python-coverage, python2-coverage,
  python-discover, python2-discover,
  python-exif-read, python2-exif-read,
  python-pyld, python2-pyld,
  python-certifi, python2-certifi,
  python-click, python2-click,
  python-vcversioner, python2-vcversioner,
  python-unidecode, python2-unidecode,
  python-pyyaml, python2-pyyaml,
  python-markupsafe, python2-markupsafe,
  python-pystache, python2-pystache,
  python-docutils, python2-docutils,
  python-pygments, python2-pygments,
  python-sphinx-rtd-theme, python2-sphinx-rtd-theme,
  python-blinker, python2-blinker,
  python-rq, python2-rq,
  python-numpy, python2-numpy,
  python-distutils-extra, python2-distutils-extra,
  python2-elib.intl,
  python-pillow, python2-pillow,
  python-xcffib, python2-xcffib,
  python-decorator, python2-decorator,
  python-gridmap, python2-gridmap,
  python-pickleshare, python2-pickleshare,
  python-isodate, python2-isodate,
  python-html5lib, python2-html5lib,
  python2-cssutils,
  python-cssselect, python2-cssselect,
  python-netifaces, python2-netifaces,
  python-sympy, python2-sympy,
  python-testlib, python2-testlib,
  python2-xlib,
  python-singledispatch, python2-singledispatch,
  python-backports-abc, python2-backports-abc,
  python-pep8, python2-pep8,
  python-pyflakes, python2-pyflakes,
  python-fonttools, python2-fonttools,
  python-ly,
  python-appdirs, python2-appdirs,
  python-netaddr, python2-netaddr,
  python-wrapt, python2-wrapt,
  python-iso8601, python2-iso8601,
  python-monotonic, python2-monotonic,
  python-prettytable, python2-prettytable,
  python-pyasn1-modules, python2-pyasn1-modules,
  python-idna, python2-idna,
  python-pretend, python2-pretend,
  python-cryptography-vectors, python2-cryptography-vectors,
  python-cryptography, python2-cryptography,
  python-pyopenssl, python2-pyopenssl,
  python-debian, python2-debian,
  python-chardet, python2-chardet,
  python-zope-event, python2-zope-event,
  python-zope-i18nmessageid, python2-zope-i18nmessageid,
  python-websocket-client, python2-websocket-client,
  python-args, python2-args,
  python-astor, python2-astor,
  python2-functools32,
  python2-futures,
  python2-promise,
  python-colorama, python2-colorama,
  python-pluggy, python2-pluggy,
  python-jmespath, python2-jmespath,
  python-botocore, python2-botocore,
  awscli,
  python-pytest-subtesthack, python2-pytest-subtesthack,
  python-pastedeploy, python2-pastedeploy,
  python-magic, python2-magic,
  python2-s3cmd,
  python2-bz2file,
  python-cysignals, python2-cysignals,
  python-py3status,
  python-tblib, python2-tblib,
  python-greenlet, python2-greenlet,
  python-twisted, python2-twisted,
  python-kazoo, python2-kazoo,
  python-pykafka, python2-pykafka,
  python2-jsonrpclib,
  python-chai, python2-chai,
  python-inflection, python2-inflection,
  python-pylev, python2-pylev,
  python-lazy-object-proxy, python2-lazy-object-proxy,
  python-dnspython, python2-dnspython,
  python-email-validator, python2-email-validator,
  python-ukpostcodeparser, python2-ukpostcodeparser,
  python-pyaml, python2-pyaml,
  python-flexmock, python2-flexmock,
  python-orator, python2-orator,
  python-bleach, python2-bleach,
  python-ipywidgets, python2-ipywidgets,
  python-nbconvert, python2-nbconvert,
  python-nbformat, python2-nbformat,
  python-axolotl-curve25519, python-axolotl2-curve25519,
  python-axolotl, python2-axolotl,
  python-nautilus, python-s3transfer): Remove python-setuptools and
  python2-setuptools from [inputs], [native-inputs] or [propagated-inputs].
  Remove [inputs], [native-inputs] and [propagated-inputs] where
  python-setuptools or python2-setuptools were the sole entry.
 2016-11-15 21:54:58 +01:00
ng0
e1b0b8f5b7
gnu: Fix name for ng0. 
* gnu/packages/gnupg.scm: Change name in copyright header.
 2016-11-15 14:36:58 -05:00
Tobias Geerinckx-Rice
bb6e641588
gnu: Add httptunnel. 
* gnu/packages/web.scm (httptunnel): New variable.
 2016-11-15 20:27:14 +01:00
Ricardo Wurmus
84590149e6
gnu: hisat: Fix typo. 
* gnu/packages/bioinformatics.scm (hisat)[arguments]: Fix directory
name in install phase.
 2016-11-15 20:21:08 +01:00
Ricardo Wurmus
49c2665f7b
gnu: Add pcb-rnd. 
* gnu/packages/engineering.scm (pcb-rnd): New variable.
 2016-11-15 20:21:03 +01:00
Hartmut Goebel
15e57f5762
gnu: python-2.7: Add all guix prefixes in PYTHONPATH to site-prefixes. 
* gnu/packages/patches/python-2.7-site-prefixes.patch: New file.
* gnu/packages/python.scm (python-2)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add patch.
 2016-11-15 17:37:48 +01:00
Hartmut Goebel
aaf75c890b
gnu: ensure pip and setuptools are installed even for Python 2. 
* gnu/packages/python.scm (python-2.7): Add "--with-ensurepip=install" to
  configure-flags.
* doc/guix.texi (Python Modules): Document it.
 2016-11-15 17:37:40 +01:00
Efraim Flashner
b02b9a520e
gnu: libmicrohttpd: Update to 0.9.52. 
* gnu/packages/gnunet.scm (libmicrohttpd): Update to 0.9.52.
[home-page]: Use https.
 2016-11-15 15:25:15 +02:00