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126897 commits

Author SHA1 Message Date
Ricardo Wurmus
0282bb3aa6
gnu: r-abseqr: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-abseqr): Update to 1.20.0.

Change-Id: Id4fea6a81954388c46417e1de5ea5c3b54b60025
2023-11-03 22:49:21 +01:00
Ricardo Wurmus
d478ba2bfb
gnu: r-a4: Update to 1.50.0.
* gnu/packages/bioconductor.scm (r-a4): Update to 1.50.0.

Change-Id: I23de20743d631b3ef3b18707d1c3c1cae67108be
2023-11-03 22:49:21 +01:00
Ricardo Wurmus
d69276f7e2
gnu: r-a4base: Update to 1.50.0.
* gnu/packages/bioconductor.scm (r-a4base): Update to 1.50.0.

Change-Id: I5c2ecfe6e888af18fced6571461b4278a1e188fe
2023-11-03 22:49:21 +01:00
Ricardo Wurmus
c6ad1d6186
gnu: r-a4reporting: Update to 1.50.0.
* gnu/packages/bioconductor.scm (r-a4reporting): Update to 1.50.0.

Change-Id: Ifb88020fcd8812937e1d4cf2d63f7e2141285c5a
2023-11-03 22:49:21 +01:00
Ricardo Wurmus
c5a7e436a4
gnu: r-a4preproc: Update to 1.50.0.
* gnu/packages/bioconductor.scm (r-a4preproc): Update to 1.50.0.

Change-Id: I2b73b3e793131c8d07258bb5f3c0e1304f8b788f
2023-11-03 22:49:21 +01:00
Ricardo Wurmus
b89491fcfb
gnu: r-a4classif: Update to 1.50.0.
* gnu/packages/bioconductor.scm (r-a4classif): Update to 1.50.0.

Change-Id: Ib9624648a85cd945eeb4de4f78b1d3c214b3efc4
2023-11-03 22:49:21 +01:00
Ricardo Wurmus
17290efded
gnu: r-a4core: Update to 1.50.0.
* gnu/packages/bioconductor.scm (r-a4core): Update to 1.50.0.

Change-Id: I94addc286eca817db8220eaa83b69742c89f0b25
2023-11-03 22:49:21 +01:00
Ricardo Wurmus
7e82848893
gnu: r-annaffy: Update to 1.74.0.
* gnu/packages/bioconductor.scm (r-annaffy): Update to 1.74.0.

Change-Id: Ib9e106212783df75fbc03eea51d1c768720f0340
2023-11-03 22:49:21 +01:00
Ricardo Wurmus
97a6b7b971
gnu: r-mlinterfaces: Update to 1.82.0.
* gnu/packages/bioconductor.scm (r-mlinterfaces): Update to 1.82.0.

Change-Id: I1c2812f02206e6026ca4b133f46bb45e45c5d827
2023-11-03 22:49:21 +01:00
Ricardo Wurmus
c7d59ff365
gnu: r-clusterexperiment: Update to 2.22.0.
* gnu/packages/bioconductor.scm (r-clusterexperiment): Update to 2.22.0.

Change-Id: I79d2df6fb405ec2870363fd9f63d6d72a3c17b5d
2023-11-03 22:49:21 +01:00
Ricardo Wurmus
c112d7bdf0
gnu: r-clusterprofiler: Update to 4.10.0.
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 4.10.0.
[propagated-inputs]: Add r-httr and r-igraph.

Change-Id: I87ea2a45b028483551ba936030f002d4bf1d97f0
2023-11-03 22:49:21 +01:00
Ricardo Wurmus
5342489b80
gnu: r-enrichplot: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-enrichplot): Update to 1.22.0.

Change-Id: I68187ecaeb0530cd5a6e8f80663a3428dd019f0a
2023-11-03 22:49:21 +01:00
Ricardo Wurmus
109a63f7b8
gnu: r-enrichedheatmap: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-enrichedheatmap): Update to 1.32.0.

Change-Id: I9fb9f51ff7c386d0beaec6c1e5384b48c7a9a4ad
2023-11-03 22:49:21 +01:00
Ricardo Wurmus
9dcb82f7e7
gnu: r-dose: Update to 3.28.0.
* gnu/packages/bioconductor.scm (r-dose): Update to 3.28.0.
[propagated-inputs]: Add r-hpo-db and r-mpo-db.

Change-Id: I6c64242cf13cd30274024727571dc0ae7cbc0c94
2023-11-03 22:49:21 +01:00
Ricardo Wurmus
77f4a907b3
gnu: r-fgsea: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-fgsea): Update to 1.28.0.

Change-Id: I32e23fb87f56f9013fe0505c0068a70ce2afa371
2023-11-03 22:49:21 +01:00
Ricardo Wurmus
7cca324d3b
gnu: r-fcscan: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-fcscan): Update to 1.16.0.

Change-Id: I2ea797017fdca22b7aa08b26f5e8f7d9d75de5d5
2023-11-03 22:49:21 +01:00
Ricardo Wurmus
27dd42cc07
gnu: r-anota2seq: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-anota2seq): Update to 1.24.0.

Change-Id: I2b0d13fee4644e88828d47562bd2bae5d290fbb3
2023-11-03 22:49:21 +01:00
Ricardo Wurmus
520fc2a345
gnu: r-anota: Update to 1.50.0.
* gnu/packages/bioconductor.scm (r-anota): Update to 1.50.0.

Change-Id: Ie9b856c11a181edbf6b7d349a7cdc67eb201dbd0
2023-11-03 22:49:21 +01:00
Ricardo Wurmus
b3f89195e9
gnu: r-gosemsim: Update to 2.28.0.
* gnu/packages/bioconductor.scm (r-gosemsim): Update to 2.28.0.
[propagated-inputs]: Add r-rlang.

Change-Id: I039ed379e9fa3870bd40a68dbfd6446ca35dafc0
2023-11-03 22:49:21 +01:00
Ricardo Wurmus
aa61c81823
gnu: r-heatplus: Update to 3.10.0.
* gnu/packages/bioconductor.scm (r-heatplus): Update to 3.10.0.

Change-Id: I753528f67b5b7e3640a6e59caac755fcd755b5c5
2023-11-03 22:49:21 +01:00
Ricardo Wurmus
c3d0f015cf
gnu: r-varianttools: Update to 1.44.0.
* gnu/packages/bioconductor.scm (r-varianttools): Update to 1.44.0.

Change-Id: Ib9dc77f1ba4962d9cbb8cad7ebb8026d8e124ffa
2023-11-03 22:49:21 +01:00
Ricardo Wurmus
db11b1bbe0
gnu: r-tradeseq: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-tradeseq): Update to 1.16.0.

Change-Id: I65377ca43aa3075f7ce401494f1a335b3302306d
2023-11-03 22:49:21 +01:00
Ricardo Wurmus
5c7985b3b7
gnu: r-ioniser: Update to 2.26.0.
* gnu/packages/bioconductor.scm (r-ioniser): Update to 2.26.0.

Change-Id: I19866002eb8259be80d4f3541fd37020af802f39
2023-11-03 22:49:21 +01:00
Ricardo Wurmus
f1c930495b
gnu: r-linnorm: Update to 2.26.0.
* gnu/packages/bioconductor.scm (r-linnorm): Update to 2.26.0.

Change-Id: Ie39f7252178e41bcd103ea8a6c857992eeed7b90
2023-11-03 22:49:21 +01:00
Ricardo Wurmus
038df629a9
gnu: r-lumi: Update to 2.54.0.
* gnu/packages/bioconductor.scm (r-lumi): Update to 2.54.0.

Change-Id: I74cb1e60a1ba2e9c62b412eec51b71c9b19aa8c7
2023-11-03 22:49:21 +01:00
Ricardo Wurmus
e55a61949e
gnu: r-lefser: Update to 1.11.5.
* gnu/packages/bioconductor.scm (r-lefser): Update to 1.11.5.

Change-Id: I30883461fef45b2e535175c8534276372e1ef9e4
2023-11-03 22:49:21 +01:00
Ricardo Wurmus
e6f93e58c9
gnu: r-methylumi: Update to 2.48.0.
* gnu/packages/bioconductor.scm (r-methylumi): Update to 2.48.0.

Change-Id: Ie17336e7bbfe5b9c74beb3887596d2993adbfb4c
2023-11-03 22:49:21 +01:00
Ricardo Wurmus
8dc6103399
gnu: r-missmethyl: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-missmethyl): Update to 1.36.0.

Change-Id: I94d8bedcc262015a50d865191f0d4c70d96e77af
2023-11-03 22:49:21 +01:00
Ricardo Wurmus
f7152456ee
gnu: r-minfi: Update to 1.48.0.
* gnu/packages/bioconductor.scm (r-minfi): Update to 1.48.0.

Change-Id: Iac319a3da6a8a434517e9286a8753cef7113c4c7
2023-11-03 22:49:20 +01:00
Ricardo Wurmus
3bc5dbe892
gnu: r-milor: Update to 1.10.0.
* gnu/packages/bioconductor.scm (r-milor): Update to 1.10.0.

Change-Id: I20c89307a59ab7659a35fc1c5c4f2c5c10cf7181
2023-11-03 22:49:20 +01:00
Ricardo Wurmus
a997efca8c
gnu: r-microbiome: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-microbiome): Update to 1.24.0.

Change-Id: Ifca782fec5346f00a866daaaf10760a962e5a36e
2023-11-03 22:49:20 +01:00
Ricardo Wurmus
c192f994c4
gnu: r-mia: Update to 1.10.0.
* gnu/packages/bioconductor.scm (r-mia): Update to 1.10.0.
[propagated-inputs]: Add r-bluster and r-matrixgenerics.

Change-Id: I667de5184501a283f1090f3e49cd796537177882
2023-11-03 22:49:20 +01:00
Ricardo Wurmus
919fad614e
gnu: r-bumpymatrix: Update to 1.10.0.
* gnu/packages/bioconductor.scm (r-bumpymatrix): Update to 1.10.0.

Change-Id: I9ce9b6d0e765dcef1ef9b7eaa8ceadca19ba66f3
2023-11-03 22:49:20 +01:00
Ricardo Wurmus
e2f2927666
gnu: r-bumphunter: Update to 1.44.0.
* gnu/packages/bioconductor.scm (r-bumphunter): Update to 1.44.0.

Change-Id: I259937e8d0e7934986b174b0607411ffe1e62bde
2023-11-03 22:49:20 +01:00
Ricardo Wurmus
9d69d64b46
gnu: r-siggenes: Update to 1.76.0.
* gnu/packages/bioconductor.scm (r-siggenes): Update to 1.76.0.

Change-Id: I89ebcf7df2771f8ab19bd74d93ba15b72e1a70a3
2023-11-03 22:49:20 +01:00
Ricardo Wurmus
54a13eff99
gnu: r-illuminaio: Update to 0.44.0.
* gnu/packages/bioconductor.scm (r-illuminaio): Update to 0.44.0.

Change-Id: I8da181164ac8e9c98ecc892a7d1fe878cdced4f0
2023-11-03 22:49:20 +01:00
Ricardo Wurmus
cb94125b4c
gnu: r-geoquery: Update to 2.70.0.
* gnu/packages/bioconductor.scm (r-geoquery): Update to 2.70.0.

Change-Id: I9d58b9ed1ad004177a354c7c688ec431368373f8
2023-11-03 22:49:20 +01:00
Ricardo Wurmus
dffab6110f
gnu: r-scone: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-scone): Update to 1.26.0.

Change-Id: Iae18ed324d7925e647a664e1547fa0eeaedab6a3
2023-11-03 22:49:20 +01:00
Ricardo Wurmus
61a2dc87d8
gnu: r-scdd: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-scdd): Update to 1.26.0.

Change-Id: I631b260c9a8069fc88140c2a0c9f700f1f321a1a
2023-11-03 22:49:20 +01:00
Ricardo Wurmus
005c3a7ec9
gnu: r-noiseq: Update to 2.46.0.
* gnu/packages/bioconductor.scm (r-noiseq): Update to 2.46.0.

Change-Id: Ie5e5043de7def381411ae1637ebc224f82818eee
2023-11-03 22:49:20 +01:00
Ricardo Wurmus
444871c0f2
gnu: r-sangerseqr: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-sangerseqr): Update to 1.38.0.

Change-Id: I53de38940e7ce55f35de24e2f9b5dbf83fcc4f90
2023-11-03 22:49:20 +01:00
Ricardo Wurmus
1b63a91e57
gnu: r-monocle: Update to 2.30.0.
* gnu/packages/bioconductor.scm (r-monocle): Update to 2.30.0.

Change-Id: Ib0a52eae3545712f3b96e42addf2d9c647eb29f9
2023-11-03 22:49:20 +01:00
Ricardo Wurmus
0c92b1d860
gnu: r-mast: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-mast): Update to 1.28.0.

Change-Id: I53175447d543c51fba4bf34a11cbebfabf483d61
2023-11-03 22:49:20 +01:00
Ricardo Wurmus
22b1839f1a
gnu: r-batchelor: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-batchelor): Update to 1.18.0.

Change-Id: I0d8513f7d4ba32a5c642afce49724b0e88954b40
2023-11-03 22:49:20 +01:00
Ricardo Wurmus
7af7d3d4e2
gnu: r-residualmatrix: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-residualmatrix): Update to 1.12.0.

Change-Id: I011255d102774dfc396e41102f6f3fe4c90b9b2b
2023-11-03 22:49:20 +01:00
Ricardo Wurmus
1d4787f8fa
gnu: r-icobra: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-icobra): Update to 1.30.0.

Change-Id: I952db827b7b11d54004aadff3420a9a6ca595141
2023-11-03 22:49:20 +01:00
Ricardo Wurmus
82d8784abe
gnu: r-ihw: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-ihw): Update to 1.30.0.

Change-Id: Iee49effa9aa29957af7823a93712e459ca249975
2023-11-03 22:49:20 +01:00
Ricardo Wurmus
09d9d27c6a
gnu: r-lpsymphony: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-lpsymphony): Update to 1.30.0.
[native-inputs]: Remove gfortran.

Change-Id: I404d33ce76764d76e6cc5f50ce297c2cab193d52
2023-11-03 22:49:20 +01:00
Ricardo Wurmus
5b36a69e0f
gnu: r-karyoploter: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-karyoploter): Update to 1.28.0.

Change-Id: I22ef7507f4255cee55c502117994fe96e63458e5
2023-11-03 22:49:20 +01:00
Ricardo Wurmus
9e5d778400
gnu: r-ebseq: Update to 2.0.0.
* gnu/packages/bioconductor.scm (r-ebseq): Update to 2.0.0.
[propagated-inputs]: Add r-bh, r-rcpp, and r-rcppeigen.

Change-Id: I013ea3d56a794c0dc28e159b787b7615ff5ebadd
2023-11-03 22:49:20 +01:00