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Author SHA1 Message Date
Ricardo Wurmus
02fd07b305
gnu: Add texlive-latex-jknapltx. 
* gnu/packages/tex.scm (texlive-latex-jknapltx): New variable.
 2017-07-09 17:07:32 +02:00
Ricardo Wurmus
b2bc1daf98
gnu: Add texlive-latex-listings. 
* gnu/packages/tex.scm (texlive-latex-listings): New variable.
 2017-07-09 17:07:32 +02:00
Ricardo Wurmus
3921bc7c24
gnu: Add texlive-latex-footmisc. 
* gnu/packages/tex.scm (texlive-latex-footmisc): New variable.
 2017-07-09 17:07:31 +02:00
Ricardo Wurmus
df2b9bb4de
gnu: Add texlive-latex-float. 
* gnu/packages/tex.scm (texlive-latex-float): New variable.
 2017-07-09 17:07:31 +02:00
Ricardo Wurmus
18ce343773
gnu: Add texlive-latex-fancyvrb. 
* gnu/packages/tex.scm (texlive-latex-fancyvrb): New variable.
 2017-07-09 17:07:31 +02:00
Ricardo Wurmus
20282111e5
gnu: Add texlive-latex-fancyhdr. 
* gnu/packages/tex.scm (texlive-latex-fancyhdr): New variable.
 2017-07-09 17:07:30 +02:00
Ricardo Wurmus
36ce05ffdd
gnu: Add texlive-latex-fancybox. 
* gnu/packages/tex.scm (texlive-latex-fancybox): New variable.
 2017-07-09 17:07:30 +02:00
Ricardo Wurmus
e003a5f06d
gnu: Add texlive-latex-colortbl. 
* gnu/packages/tex.scm (texlive-latex-colortbl): New variable.
 2017-07-09 17:07:30 +02:00
Ricardo Wurmus
b92ac281e5
gnu: Add texlive-latex-changebar. 
* gnu/packages/tex.scm (texlive-latex-changebar): New variable.
 2017-07-09 17:07:29 +02:00
Ricardo Wurmus
1d3be84e73
gnu: Add texlive-latex-appendix. 
* gnu/packages/tex.scm (texlive-latex-appendix): New variable.
 2017-07-09 17:07:29 +02:00
Ricardo Wurmus
bda61541d5
gnu: Add texlive-latex-anysize. 
* gnu/packages/tex.scm (texlive-latex-anysize): New variable.
 2017-07-09 17:07:29 +02:00
Ricardo Wurmus
137f9cbc88
gnu: Add texlive-latex-amsfonts. 
* gnu/packages/tex.scm (texlive-latex-amsfonts): New variable.
 2017-07-09 17:07:29 +02:00
Ricardo Wurmus
98b4aca156
gnu: Add texlive-fonts-amsfonts. 
* gnu/packages/tex.scm (texlive-fonts-amsfonts): New variable.
 2017-07-09 17:07:28 +02:00
Ricardo Wurmus
beb476ed77
gnu: texlive-generic-ifxetex: Fix description. 
* gnu/packages/tex.scm (texlive-generic-ifxetex)[description]: Fix typo.
 2017-07-09 17:07:28 +02:00
Ricardo Wurmus
05d28068ed
gnu: texlive-latex-oberdiek: Build ifpdf package. 
* gnu/packages/tex.scm (texlive-latex-oberdiek)[arguments]: Only build the
"oberdiek.ins" package (which includes all other packages); patch file to
build "ifpdf.dtx" instead of "ifpdf.ins".
 2017-07-09 17:07:28 +02:00
Ricardo Wurmus
702f23b3b8
gnu: texlive-latex-base: Fix xetex and xelatex formats. 
* gnu/packages/tex.scm (texlive-latex-base)[arguments]: Build xetex and
xelatex formats with matching interpreters.
 2017-07-09 17:07:27 +02:00
Ricardo Wurmus
bb3b35975c
build-system: texlive: Build union in configure phase. 
This allows us to use texmf.cnf instead of having to set all required
environment variables manually.

* guix/build/texlive-build-system.scm (configure): New procedure.
(build): Simplify.
(%standard-phases): Add configure phase.
* guix/build-system/texlive.scm (texlive-build): Include (guix build union) in
modules.
(%texlive-build-system-modules): Likewise.
 2017-07-09 17:07:27 +02:00
Ricardo Wurmus
1678be097b
build-system: texlive: Only build packages in the current directory. 
* guix/build/texlive-build-system.scm (build): Use scandir instead of
find-files.
 2017-07-09 17:07:27 +02:00
Ricardo Wurmus
fed7200862
gnu: deeptools: Update to 2.5.1. 
* gnu/packages/bioinformatics.scm (deeptools): Update to 2.5.1.
[arguments]: Remove.
[native-inputs]: Use "python-" instead of "python2-" variants.
[inputs]: Likewise; add python-py2bit.
 2017-07-09 17:07:27 +02:00
Ricardo Wurmus
eb2200f3bd
gnu: Add python-py2bit. 
* gnu/packages/bioinformatics.scm (python-py2bit): New variable.
 2017-07-09 17:07:23 +02:00
Ricardo Wurmus
bdb31853f0
gnu: Add java-jgit-4.2. 
* gnu/packages/version-control.scm (java-jgit-4.2): New variable.
 2017-07-09 16:57:05 +02:00
Ricardo Wurmus
2613f5aff0
gnu: Add java-jgit. 
* gnu/packages/version-control.scm (java-jgit): New variable.
 2017-07-09 16:57:05 +02:00
Ricardo Wurmus
f8e4d0224b
gnu: Add java-slf4j-api. 
* gnu/packages/java.scm (java-slf4j-api): New variable.
 2017-07-09 16:57:04 +02:00
Ricardo Wurmus
eb270ecfdd
gnu: Add java-javaewah. 
* gnu/packages/java.scm (java-javaewah): New variable.
 2017-07-09 16:57:04 +02:00
Ricardo Wurmus
218d093b15
gnu: Add java-classpathx-servletapi 
* gnu/packages/java.scm (java-classpathx-servletapi): New variable.
 2017-07-09 16:57:03 +02:00
Tobias Geerinckx-Rice
efd5a841e5
gnu: youtube-dl: Update to 2017.07.09. 
* gnu/packages/video.scm (youtube-dl): Update to 2017.07.09.
 2017-07-09 15:58:35 +02:00
Marius Bakke
ed40e7c5eb
gnu: libjpeg-turbo: Update to 1.5.2. 
* gnu/packages/image.scm (libjpeg-turbo): Update to 1.5.2.
[arguments]<#:phases>: Remove.
 2017-07-09 15:12:53 +02:00
Feng Shu
e2155f58c0
gnu: you-get: Update to 0.4.775. 
* gnu/packages/video.scm (you-get): Update to 0.4.775.

Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
 2017-07-09 21:27:37 +10:00
Leo Famulari
b3cc304b30
gnu: poppler: Use an ABI-compatible replacement to fix CVE-2017-9776. 
This is a followup to commit 95bbaa02aa.
See <https://bugs.gnu.org/27621> for more information.

Poppler 0.56.0's ABI is not compatible with Poppler 0.52.0, so it's not
possible to graft the newer version in place of the older one.

This change leaves CVE-2017-9775 unfixed for now.

* gnu/packages/patches/poppler-CVE-2017-9776.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/pdf.scm (poppler-0.56.0): Replace with ...
(poppler/fixed): ... new variable.
(poppler)[replacement]: Replaced with poppler/fixed.
 2017-07-09 02:25:27 -04:00
Tobias Geerinckx-Rice
447f75825f
gnu: sshuttle: Update to 0.78.3. 
* gnu/packages/vpn.scm (sshuttle): Update to 0.78.3.
 2017-07-09 01:59:25 +02:00
Kei Kebreau
5143517c99
gnu: wxmaxima: Update to 17.05.0. 
* gnu/packages/maths.scm (wxmaxima): Update to 17.05.0.
[source]: Update URL and add file-name.
[native-inputs]: Add autoconf, automake and gettext-minimal.
[arguments]: Add 'autoconf' phase.
 2017-07-08 17:05:55 -04:00
Efraim Flashner
fac2b430b9
gnu: font-gnu-unifont: Update to 10.0.04. 
* gnu/packages/fonts.scm (font-gnu-unifont): Update to 10.0.04.
 2017-07-08 23:49:29 +03:00
Oleg Pykhalov
dde1e152ce
doc: Add note about private-key during offload. 
* doc/guix.texi (Using the Offload Facility): Add note about private-key.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2017-07-08 18:29:35 +02:00
Ben Woodcroft
4732e6ee84
gnu: blast+: Update to 2.6.0. 
* gnu/packages/bioinformatics.scm (blast+): Update to 2.6.0.
[origin]: Remove bundled pcre.  Add patch.
[arguments]: Replace paths in run_with_lock.c.  Configure with pcre.
[inputs]: Add pcre, perl, python.
* gnu/packages/patches/blast+-fix-makefile.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2017-07-08 12:05:59 +10:00
Kei Kebreau
f2fa86cc82
gnu: maxima: Ensure gcc is available at runtime. 
* gnu/packages/maths.scm (maxima)[inputs]: Add gcc.
[arguments]: Use modify-phases syntax. Add 'set-gcc-path' phase.
 2017-07-07 20:47:28 -04:00
Leo Famulari
0ca1e77c14
gnu: perl-dbd-mysql: Update to 4.043. 
* gnu/packages/databases.scm (perl-dbd-mysql): Update to 4.043.
 2017-07-07 20:34:52 -04:00
Marius Bakke
d28f90bed9
gnu: python-pyopenssl: Fix test failure on 32-bit platforms. 
* gnu/packages/patches/python-pyopenssl-17.1.0-test-overflow.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/python.scm (python-pyopenssl)[source]: Use it.
 2017-07-07 18:43:16 +02:00
Leo Famulari
4909eadfad
gnu: irssi: Update to 1.0.4 [fixes CVE-2017-{10965,10966}]. 
* gnu/packages/irc.scm (irssi): Update to 1.0.4.
 2017-07-07 12:36:00 -04:00
Danny Milosavljevic
acc0f6bb58
guix system: Add file system label and uuid to iso9660-image. 
* gnu/system/vm.scm (system-disk-image): Pass root-label to ...
(iso9660-image): ... here.  Add keyword arguments #:file-system-label
and #:file-system-uuid.
 2017-07-07 18:04:31 +02:00
Mark H Weaver
0b1e2ecb25
gnu: webkitgtk: Update to 2.16.5. 
* gnu/packages/webkit.scm (webkitgtk): Update to 2.16.5.
 2017-07-07 11:54:01 -04:00
Tobias Geerinckx-Rice
5826e7b11b
gnu: rdma-core: Update to 14. 
* gnu/packages/linux.scm (rdma-core): Update to 14.
 2017-07-07 15:24:14 +02:00
Tobias Geerinckx-Rice
5d3474c5a9
gnu: catimg: Update to 2.3.2. 
* gnu/packages/image-viewers.scm (catimg): Update to 2.3.2.
 2017-07-07 15:24:14 +02:00
Leo Famulari
642656a144
gnu: python-parsedatetime: Update to 2.4. 
* gnu/packages/python.scm (python-parsedatetime, python2-parsedatetime):
Update to 2.4.
 2017-07-07 01:23:12 -04:00
Leo Famulari
93013f1e79
gnu: python-icalendar: Update to 3.11.5. 
* gnu/packages/python.scm (python-icalendar): Update to 3.11.5.
 2017-07-07 01:23:08 -04:00
Alex Vong
dab536fe1a
gnu: libtiff: Fix CVE-2017-{9936,10688}. 
* gnu/packages/patches/libtiff-CVE-2017-9936.patch,
gnu/packages/patches/libtiff-CVE-2017-10688.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/image.scm (libtiff-4.0.8)[source]: Use them.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-07-07 00:06:37 -04:00
Kei Kebreau
ab104672e1
gnu: xorg-server: Fix CVE-2017-{10971,10972}. 
* gnu/packages/patches/xorg-server-CVE-2017-10971.patch,
gnu/packages/patches/xorg-server-CVE-2017-10972.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/xorg.scm (xorg-server)[source]: Use them.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-07-06 23:52:22 -04:00
Alex Vong
96dcaa0ca9
gnu: youtube-dl: Update to 2017.07.02. 
* gnu/packages/video.scm (youtube-dl): Update to 2017.07.02.

Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
 2017-07-07 01:50:27 +02:00
Leo Famulari
0a66c38764
Revert "gnu: blast+: Update to 2.6.0." 
This reverts commit 18dea67dc3.
 2017-07-06 19:38:55 -04:00
Ludovic Courtès
5dfbd76971
gnu: shadow: Correctly match the system type. 
* gnu/packages/admin.scm (shadow)[inputs]: Use 'string-contains' instead
of 'string-prefix?' when matching the system type.
 2017-07-07 00:44:55 +02:00
Mark H Weaver
879b89d1ae
gnu: linux-libre@4.9: Update to 4.9.36. 
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.36.
 2017-07-06 18:41:45 -04:00