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106876 commits

Author SHA1 Message Date
Ricardo Wurmus
031dbcbd0e
gnu: r-opencyto: Update to 2.10.1.
* gnu/packages/bioconductor.scm (r-opencyto): Update to 2.10.1.
[propagated-inputs]: Remove r-clue, r-flowstats, r-gtools, r-ks, r-lattice, r-mass,
r-plyr, r-r-utils, r-rcpp, and r-rrcov; add r-bh and r-cpp11.
2022-12-20 12:09:34 +01:00
Ricardo Wurmus
7edcbf84bf
gnu: r-ggcyto: Update to 1.26.4.
* gnu/packages/bioconductor.scm (r-ggcyto): Update to 1.26.4.
2022-12-20 12:09:33 +01:00
Ricardo Wurmus
5ac36a82e8
gnu: r-rsubread: Update to 2.12.2.
* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.12.2.
2022-12-20 12:09:33 +01:00
Ricardo Wurmus
90b10b37e8
gnu: r-iclusterplus: Update to 1.34.2.
* gnu/packages/bioconductor.scm (r-iclusterplus): Update to 1.34.2.
2022-12-20 12:09:33 +01:00
Ricardo Wurmus
7f45db2df8
gnu: r-aucell: Update to 1.20.2.
* gnu/packages/bioconductor.scm (r-aucell): Update to 1.20.2.
[propagated-inputs]: Add r-matrix.
2022-12-20 12:09:33 +01:00
Ricardo Wurmus
da24c1c949
gnu: r-clusterexperiment: Update to 2.18.1.
* gnu/packages/bioconductor.scm (r-clusterexperiment): Update to 2.18.1.
2022-12-20 12:09:33 +01:00
Ricardo Wurmus
2e10df101f
gnu: r-enrichplot: Update to 1.18.3.
* gnu/packages/bioconductor.scm (r-enrichplot): Update to 1.18.3.
2022-12-20 12:09:33 +01:00
Ricardo Wurmus
7205384533
gnu: r-sigpathway: Update to 1.66.1.
* gnu/packages/bioconductor.scm (r-sigpathway): Update to 1.66.1.
2022-12-20 12:09:33 +01:00
Ricardo Wurmus
ceffbc313f
gnu: r-linnorm: Update to 2.22.1.
* gnu/packages/bioconductor.scm (r-linnorm): Update to 2.22.1.
2022-12-20 12:09:33 +01:00
Ricardo Wurmus
2eb81c0888
gnu: r-lpsymphony: Update to 1.26.2.
* gnu/packages/bioconductor.scm (r-lpsymphony): Update to 1.26.2.
2022-12-20 12:09:33 +01:00
Ricardo Wurmus
b51001141b
gnu: r-dnacopy: Update to 1.72.2.
* gnu/packages/bioconductor.scm (r-dnacopy): Update to 1.72.2.
2022-12-20 12:09:33 +01:00
Ricardo Wurmus
96508fa43a
gnu: r-glmgampoi: Update to 1.10.1.
* gnu/packages/bioconductor.scm (r-glmgampoi): Update to 1.10.1.
2022-12-20 12:09:33 +01:00
Ricardo Wurmus
c47fd0c47c
gnu: r-diffbind: Update to 3.8.3.
* gnu/packages/bioconductor.scm (r-diffbind): Update to 3.8.3.
2022-12-20 12:09:33 +01:00
Ricardo Wurmus
a13f5a52d0
gnu: r-oligo: Update to 1.62.1.
* gnu/packages/bioconductor.scm (r-oligo): Update to 1.62.1.
2022-12-20 12:09:33 +01:00
Ricardo Wurmus
9e18e3a372
gnu: r-tximport: Update to 1.26.1.
* gnu/packages/bioconductor.scm (r-tximport): Update to 1.26.1.
2022-12-20 12:09:32 +01:00
Ricardo Wurmus
dc6f9ab3ab
gnu: r-scmap: Update to 1.20.1.
* gnu/packages/bioconductor.scm (r-scmap): Update to 1.20.1.
2022-12-20 12:09:32 +01:00
Ricardo Wurmus
5fc338637b
gnu: r-lfa: Update to 1.28.1.
* gnu/packages/bioconductor.scm (r-lfa): Update to 1.28.1.
2022-12-20 12:09:32 +01:00
Ricardo Wurmus
53fb765c85
gnu: r-impute: Update to 1.72.2.
* gnu/packages/bioconductor.scm (r-impute): Update to 1.72.2.
2022-12-20 12:09:32 +01:00
Ricardo Wurmus
b035f07cc2
gnu: r-genomicranges: Update to 1.50.2.
* gnu/packages/bioconductor.scm (r-genomicranges): Update to 1.50.2.
2022-12-20 12:09:32 +01:00
Ricardo Wurmus
a4362f4599
gnu: r-genomicfeatures: Update to 1.50.3.
* gnu/packages/bioconductor.scm (r-genomicfeatures): Update to 1.50.3.
2022-12-20 12:09:32 +01:00
Ricardo Wurmus
86fcb20aa8
gnu: r-genomeinfodb: Update to 1.34.4.
* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.34.4.
2022-12-20 12:09:32 +01:00
Ricardo Wurmus
a71a89ac39
gnu: r-genefilter: Update to 1.80.2.
* gnu/packages/bioconductor.scm (r-genefilter): Update to 1.80.2.
2022-12-20 12:09:32 +01:00
Ricardo Wurmus
6af97fcc0e
gnu: r-edger: Update to 3.40.1.
* gnu/packages/bioconductor.scm (r-edger): Update to 3.40.1.
2022-12-20 12:09:32 +01:00
Ricardo Wurmus
db6ae57157
gnu: r-deseq2: Update to 1.38.2.
* gnu/packages/bioconductor.scm (r-deseq2): Update to 1.38.2.
[propagated-inputs]: Remove r-genefilter; add r-matrixstats.
2022-12-20 12:09:32 +01:00
Ricardo Wurmus
74be5ec3e8
gnu: r-biocparallel: Update to 1.32.4.
* gnu/packages/bioconductor.scm (r-biocparallel): Update to 1.32.4.
2022-12-20 12:09:32 +01:00
Ricardo Wurmus
e757936b96
gnu: r-deconvr: Update to 1.4.3.
* gnu/packages/bioconductor.scm (r-deconvr): Update to 1.4.3.
[propagated-inputs]: Add r-minfi.
2022-12-20 12:09:32 +01:00
Ricardo Wurmus
d2666970d1
gnu: r-damefinder: Update to 1.10.1.
* gnu/packages/bioconductor.scm (r-damefinder): Update to 1.10.1.
2022-12-20 12:09:32 +01:00
Ricardo Wurmus
72f9c4312b
gnu: r-bandits: Update to 1.14.1.
* gnu/packages/bioconductor.scm (r-bandits): Update to 1.14.1.
2022-12-20 12:09:32 +01:00
Ricardo Wurmus
d7fda90354
gnu: r-bambu: Update to 3.0.5.
* gnu/packages/bioconductor.scm (r-bambu): Update to 3.0.5.
2022-12-20 12:09:31 +01:00
Ricardo Wurmus
64ed2e8380
gnu: r-ancombc: Update to 2.0.2.
* gnu/packages/bioconductor.scm (r-ancombc): Update to 2.0.2.
2022-12-20 12:09:31 +01:00
Nicolas Goaziou
f4e4e82483
gnu: emacs-org-contrib: Update to 0.4.1.
* gnu/packages/emacs-xyz.scm (emacs-org-contrib): Update to 0.4.1.
2022-12-20 12:06:56 +01:00
Nicolas Goaziou
1102b5de69
gnu: emacs-consult-notmuch: Update to 0.8.1.
* gnu/packages/emacs-xyz.scm (emacs-consult-notmuch): Update to 0.8.1.
2022-12-20 12:00:03 +01:00
Nicolas Goaziou
69dade5bbf
gnu: emacs-citeproc-el: Update to 0.9.2.
* gnu/packages/emacs-xyz.scm (emacs-citeproc-el): Update to 0.9.2.
2022-12-20 11:58:54 +01:00
Nicolas Goaziou
260743991f
gnu: emacs-bfuture: Update to 1.0.2.
* gnu/packages/emacs-xyz.scm (emacs-bfuture): Update to 1.0.2.
2022-12-20 11:57:49 +01:00
Nicolas Goaziou
50024eeef1
gnu: emacs-vertico-posframe: Update to 0.6.0.
* gnu/packages/emacs-xyz.scm (emacs-vertico-posframe): Update to 0.6.0.
2022-12-20 11:56:47 +01:00
Nicolas Goaziou
f5d53ac4ae
gnu: emacs-rec-mode: Update to 1.9.1.
* gnu/packages/databases.scm (emacs-rec-mode): Update to 1.9.1.
2022-12-20 11:56:42 +01:00
Nicolas Goaziou
326d485c29
gnu: emacs-posframe: Update to 1.3.2.
* gnu/packages/emacs-xyz.scm (emacs-posframe): Update to 1.3.2.
2022-12-20 11:56:27 +01:00
jgart via Guix-patches via
9dbd12f629
gnu: Add emacs-fzf.
* gnu/packages/emacs-xyz.scm (emacs-fzf): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2022-12-20 11:15:07 +01:00
Nicolas Goaziou
49b68c9842
gnu: emacs-eldev: Update to 1.3.1.
* gnu/packages/emacs-xyz.scm (emacs-eldev): Update to 1.3.1.
2022-12-20 11:15:07 +01:00
Nicolas Goaziou
851fbac0a9
gnu: sfizz: Improve package style.
* gnu/packages/music.scm (sfizz)[arguments]: Use G-expressions.
[inputs]: Remove input labels.
2022-12-20 11:15:07 +01:00
Nicolas Goaziou
2ad9bf1661
gnu: sfizz: Update to 1.2.0.
* gnu/packages/music.scm (sfizz): Update to 1.2.0.
[arguments]<#:configure-flags>: Use system Pugixml.
2022-12-20 11:15:06 +01:00
Florian Pelz
bbd11199e6
services:·kmscon:·Display·CJK·characters.
Follow-up·to d7d049fdcd.

* gnu/services/base.scm·(kmscon-service-type):·Use·GNU·Unifont,
which bundles CJK glyphs from WenQuanYi and elsewhere.
2022-12-20 11:11:23 +01:00
Leo Famulari
bd6d76b8a4
gnu: linux-libre 5.4: Update to 5.4.228.
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.228.
(linux-libre-5.4-pristine-source): Update hash.
2022-12-19 22:54:23 -05:00
Leo Famulari
0e0f54416f
gnu: linux-libre 5.10: Update to 5.10.160.
* gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.160.
(linux-libre-5.10-pristine-source): Update hash.
2022-12-19 22:54:23 -05:00
Leo Famulari
6490835e4a
gnu: linux-libre 5.15: Update to 5.15.84.
* gnu/packages/linux.scm (linux-libre-5.15-version): Update to 5.15.84.
(linux-libre-5.15-pristine-source): Update hash.
2022-12-19 22:54:23 -05:00
Leo Famulari
416f9141db
gnu: linux-libre: Update to 6.0.14.
* gnu/packages/linux.scm (linux-libre-6.0-version): Update to 6.0.14.
(linux-libre-6.0-pristine-source): Update hash.
2022-12-19 22:54:22 -05:00
Marius Bakke
814214c369
gnu: QEMU: Unbundle SeaBIOS.
* gnu/packages/virtualization.scm (qemu)[source](snippet): Delete SeaBIOS
ROMs and source code.
[arguments]: Add replace-firmwares and delete-firmwares phases.
[inputs]: Add SEABIOS.
[native-inputs]: Add ACPICA.  While here, sort inputs.
2022-12-19 23:08:22 +01:00
Marius Bakke
b2fc209b2c
gnu: SeaBIOS: Prettify version string.
* gnu/packages/firmware.scm (seabios)[arguments]: Display version as
"1.16.1/GNU Guix" instead of "1.16.1-guix".
2022-12-19 23:08:22 +01:00
Marius Bakke
145aa7f04b
gnu: SeaBIOS: Build in parallel.
* gnu/packages/firmware.scm (seabios)[arguments]: Use N-PAR-FOR-EACH to build
the various targets.
2022-12-19 23:08:21 +01:00
Marius Bakke
5877dc88a2
gnu: SeaBIOS: Build more BIOSen.
* gnu/packages/firmware.scm (seabios)[arguments]: Build the "128k" and
"microvm" BIOSen expected by QEMU.  Fix installation of vgabios.
2022-12-19 23:08:21 +01:00