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Author SHA1 Message Date
Leo Famulari
75b775e81b
Merge branch 'staging' 2021-02-01 14:18:38 -05:00
Oleg Pykhalov
847c816ddd
doc: Explain how to set custom Shepherd package. 
* doc/guix.texi (Shepherd Services): Give example on how to set custom
Shepherd package.
 2021-02-01 21:49:43 +03:00
Mathieu Othacehe
85843123de
gnu: cuirass: Update to 0.0.1-64.79b77b4. 
* gnu/packages/ci.scm (cuirass): Update to 0.0.1-64.79b77b4.
 2021-02-01 18:20:19 +01:00
Kei Kebreau
1f1c525ac9
gnu: openbabel: Update to 3.1.1. 
* gnu/packages/chemistry.scm (openbabel): Update to 3.1.1.
[source]: Update URI.
[arguments]: Temporarily skip tests on i686-linux.
 2021-02-01 12:07:01 -05:00
Kei Kebreau
35bb3d5ffd
gnu: inchi: Update to 1.06. 
* gnu/packages/chemistry.scm (inchi): Update to 1.06.
[source]: Use HTTPS.
[native-inputs]: Update inchi-doc hash.
 2021-02-01 12:07:01 -05:00
Efraim Flashner
877ab0266c
gnu: vcflib: Fix generated pkg-config file. 
* gnu/packages/bioinformatics.scm (vcflib)[arguments]: In custom
generated pkg-config file, link with all needed libraries and
fix linker library.
* gnu/packages/patches/freebayes-devendor-deps.patch: Adjust accordingly.
 2021-02-01 19:02:14 +02:00
Ludovic Courtès
15078567c1
news: Add entry for '--export-manifest' and '--export-channels'. 
* etc/news.scm: Add entry.
 2021-02-01 17:58:05 +01:00
Maxim Cournoyer
1b91868288
gnu: python-attrs: Update to 20.3.0. 
* gnu/packages/python-xyz.scm (python-attrs): Update to 20.3.0.
 2021-02-01 11:54:05 -05:00
Maxim Cournoyer
f2b2280108
gnu: meson-for-build: Remove package. 
The meson-for-build package doesn't carry any special patch anymore; it
appears to be obsolete.

* gnu/packages/build-tools.scm (meson-for-build): Remove variable.
* guix/build-system/meson.scm (default-meson): Use meson.
* doc/guix.texi (Build Systems): Update doc.
 2021-02-01 11:54:04 -05:00
Maxim Cournoyer
e04cfc7beb
gnu: mpd: Update comment. 
* gnu/packages/mpd.scm (mpdris2): Replace mention of PYTHONPATH by
GUIX_PYTHONPATH.
 2021-02-01 11:54:04 -05:00
Maxim Cournoyer
bc17fadbb6
gnu: ceph: Streamline use of PYTHONPATH. 
* gnu/packages/storage.scm (ceph)
[phases]{set-install-environment}: Just add what's needed to PYTHONPATH.
 2021-02-01 11:54:04 -05:00
Maxim Cournoyer
cf264b404c
gnu: manuskript: Wrap with GUIX_PYTHONPATH. 
* gnu/packages/text-editors.scm (manuskript):
[phases]{install}: Replace PYTHONPATH with GUIX_PYTHONPATH.
 2021-02-01 11:54:04 -05:00
Maxim Cournoyer
ef302ba9c3
gnu: kaldi-gstreamer-server: Wrap with GUIX_PYTHONPATH. 
* gnu/packages/machine-learning.scm (kaldi-gstreamer-server):
[phases]{install}: Replace PYTHONPATH with GUIX_PYTHONPATH.
 2021-02-01 11:54:04 -05:00
Maxim Cournoyer
98f147dbda
gnu: ganeti: Remove PYTHONPATH-altering patch. 
* gnu/packages/patches/ganeti-preserve-PYTHONPATH.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Un-register it.
* gnu/packages/virtualization.scm (ganeti): Remove patch.
 2021-02-01 11:54:03 -05:00
Maxim Cournoyer
a0658f1a33
gnu: seahorse-adventures: Wrap with GUIX_PYTHONPATH. 
* gnu/packages/games.scm (seahorse-adventures):
[phases]{install}: Replace PYTHONPATH with GUIX_PYTHONPATH.
 2021-02-01 11:54:03 -05:00
Maxim Cournoyer
dd4d826538
gnu: roguebox-adventures: Wrap with GUIX_PYTHONPATH. 
* gnu/packages/games.scm (roguebox-adventures):
[phases]{install}: Replace PYTHONPATH with GUIX_PYTHONPATH.
 2021-02-01 11:54:03 -05:00
Maxim Cournoyer
3123c281a5
gnu: avogadro: Wrap with GUIX_PYTHONPATH. 
* gnu/packages/chemistry.scm (avogadro)
[phases]: Delete trailing #t.
{wrap-program}: Replace PYTHONPATH with GUIX_PYTHONPATH.
 2021-02-01 11:54:02 -05:00
Maxim Cournoyer
8454438e05
gnu: freecad: Wrap with GUIX_PYTHONPATH. 
* gnu/packages/engineering.scm (freecad)
[phases]{restore-pythonpath}: Delete phase.
{wrap-pythonpath}: Replace PYTHONPATH with GUIX_PYTHONPATH.
 2021-02-01 11:54:02 -05:00
Maxim Cournoyer
6275b9bc2e
gnu: hplip: Adjust to use GUIX_PYTHONPATH. 
* gnu/packages/cups.scm (hplip): Delete trailing #t.
[phases]{wrap-binaries}: Streamline and use GUIX_PYTHONPATH.
 2021-02-01 11:54:02 -05:00
Maxim Cournoyer
44ddafe167
gnu: python-cloudpickle: Do not alter PYTHONPATH. 
* gnu/packages/python.scm (python-cloudpickle)
[phases]{do-not-override-PYTHONPATH}: Delete phase.  Remove trailing #t.
 2021-02-01 11:54:02 -05:00
Maxim Cournoyer
aa7056f1f3
gnu: gnuradio: Use GUIX_PYTHONPATH in search path. 
* gnu/packages/radio.scm (gnuradio)[native-search-paths]: Use GUIX_PYTHONPATH
instead of PYTHONPATH.
 2021-02-01 11:54:02 -05:00
Maxim Cournoyer
cdd5fb526f
gnu: gajim: Use GUIX_PYTHONPATH in search path. 
* gnu/packages/messaging.scm (gajim)[native-search-paths]: Use GUIX_PYTHONPATH
instead of PYTHONPATH.
 2021-02-01 11:54:01 -05:00
Maxim Cournoyer
6867644250
gnu: pypy3: Do not alter PYTHONPATH. 
* gnu/packages/python.scm (pypy3): Do not alter PYTHONPATH.
 2021-02-01 11:54:01 -05:00
Maxim Cournoyer
792935c8da
gnu: assword: Do not alter PYTHONPATH. 
* gnu/packages/password-utils.scm (assword): Do not alter PYTHONPATH.
 2021-02-01 11:54:01 -05:00
Maxim Cournoyer
cfdfd5fe4c
gnu: gpodder: Do not alter PYTHONPATH. 
* gnu/packages/gpodder.scm (gpodder): Do not alter PYTHONPATH.
 2021-02-01 11:54:01 -05:00
Maxim Cournoyer
b03b5456b3
gnu: enjarify: Do not alter PYTHONPATH. 
* gnu/packages/android.scm (enjarify): Do not alter PYTHONPATH.
 2021-02-01 11:54:01 -05:00
Maxim Cournoyer
d42245d401
gnu: Adjust package collection to Wrap using GUIX_PYTHONPATH. 
This change was automated using:

$ git ls-files | grep .scm | \
  xargs sed 's/(getenv "PYTHONPATH")/(getenv "GUIX_PYTHONPATH")/' -i

$ git ls-files | grep .scm | \
  xargs sed 's/`("PYTHONPATH"/`("GUIX_PYTHONPATH"/' -i

* gnu/packages/admin.scm (nmap):
(dstat): Wrap using GUIX_PYTHONPATH.
* gnu/packages/audio.scm (jack-2):
(carla): Likewise.
* gnu/packages/benchmark.scm (fio): Likewise.
* gnu/packages/bioinformatics.scm (couger): Likewise.
(gess, find-circ, filtlong, nanopolish): Likewise.
* gnu/packages/cdrom.scm (cdemu-client): Likewise.
* gnu/packages/chemistry.scm (avogadro): Likewise.
* gnu/packages/connman.scm (econnman): Likewise.
* gnu/packages/cups.scm (hplip): Likewise.
* gnu/packages/debug.scm (scanmem): Likewise.
* gnu/packages/display-managers.scm (lightdm): Likewise.
* gnu/packages/ebook.scm (cozy): Likewise.
* gnu/packages/education.scm (anki): Likewise.
* gnu/packages/engineering.scm (kicad, volk, freecad): Likewise.
* gnu/packages/game-development.scm (renpy): Likewise.
* gnu/packages/games.scm (roguebox-adventures)
(seahorse-adventures, kajongg): Likewise.
* gnu/packages/gimp.scm (gimp, glimpse): Likewise.
* gnu/packages/glib.scm (itstool): Likewise.
* gnu/packages/gnome.scm (gnome-music, gtg, rhythmbox): Likewise.
(eolie, d-feet, gedit, caribou, gnome-shell, authenticator)
(gnome-todo, orca, passwordsafe, terminator, setzer)
(libratbag, komikku): Likewise.
* gnu/packages/gps.scm (gpsd): Likewise.
* gnu/packages/gtk.scm (gtk-doc): Likewise.
* gnu/packages/ibus.scm (ibus, ibus-libpinyin, ibus-anthy)
(ibus-libhangul): Likewise.
* gnu/packages/inkscape.scm (inkscape-1.0): Likewise.
* gnu/packages/linux.scm (bcc): Likewise.
* gnu/packages/mail.scm (notifymuch): Likewise.
* gnu/packages/maths.scm (units): Likewise.
* gnu/packages/music.scm (solfege): Likewise.
* gnu/packages/networking.scm (blueman): Likewise.
* gnu/packages/patchutils.scm (patchwork): Likewise.
* gnu/packages/photo.scm (rapid-photo-downloader, entangle): Likewise.
* gnu/packages/plotutils.scm (asymptote): Likewise.
* gnu/packages/presentation.scm (presentty): Likewise.
* gnu/packages/screen.scm (byobu): Likewise.
* gnu/packages/storage.scm (ceph): Likewise.
* gnu/packages/syndication.scm (liferea): Likewise.
* gnu/packages/task-management.scm (blanket): Likewise.
* gnu/packages/text-editors.scm (manuskript): Likewise.
* gnu/packages/version-control.scm (gitless, cgit, git-when-merged)
(git-imerge): Likewise.
* gnu/packages/video.scm (pitivi): Likewise.
* gnu/packages/virtualization.scm (criu): Likewise.
* gnu/packages/xfce.scm (catfish): Likewise.
 2021-02-01 11:54:01 -05:00
Maxim Cournoyer
b6632b23d7
gnu: redshift: Wrap with GUIX_PYTHONPATH. 
* gnu/packages/xdisorg.scm (redshift): Streamline wrap phase and Wrap with
GUIX_PYTHONPATH.
 2021-02-01 11:54:00 -05:00
Maxim Cournoyer
df76386b12
gnu: 389-ds-base: Wrap with GUIX_PYTHONPATH. 
* gnu/packages/openldap.scm (389-ds-base): Remove trailing #t.  Do not alter
PYTHONPATH.  Wrap with GUIX_PYTHONPATH.
 2021-02-01 11:54:00 -05:00
Maxim Cournoyer
fa5673b013
doc: Update references to PYTHONPATH and some examples. 
The PYTHONPATH variable is replaced by GUIX_PYTHONPATH.  Refresh the packages
used or shown in some of the examples.
 2021-02-01 11:54:00 -05:00
Maxim Cournoyer
b79a186702
gnu: python-gunicorn: Do not set PYTHONPATH. 
* gnu/packages/python-web.scm (python-gunicorn)
[phases]: Delete trailing #t.
{check}: Do not set PYTHONPATH.
 2021-02-01 11:54:00 -05:00
Maxim Cournoyer
7b1832dffd
gnu: python-webassets: Do not set PYTHONPATH. 
* gnu/packages/python-web.scm (python-webassets)
[phases]: Delete trailing #t.
{check}: Do not set PYTHONPATH.
 2021-02-01 11:54:00 -05:00
Maxim Cournoyer
c30a3ca749
gnu: python-flask-wtf: Do not set PYTHONPATH. 
* gnu/packages/python-web.scm (python-flask-wtf)
[phases]{check}: Do not set PYTHONPATH.
 2021-02-01 11:53:59 -05:00
Maxim Cournoyer
24ea5a70d0
gnu: python-flask: Do not set PYTHONPATH. 
* gnu/packages/python-web.scm (python-flask)
[phases]{check}: Do not set PYTHONPATH.
 2021-02-01 11:53:59 -05:00
Maxim Cournoyer
fe89470780
gnu: python-databricks-cli: Do not set PYTHONPATH. 
* gnu/packages/python-web.scm (python-databricks-cli)
[phases]{check}: Do not set PYTHONPATH.
 2021-02-01 11:53:59 -05:00
Maxim Cournoyer
5cc3d512be
gnu: python-jsonpickle: Do not set PYTHONPATH. 
* gnu/packages/python-web.scm (python-jsonpickle)
[phases]{check}: Do not set PYTHONPATH.
 2021-02-01 11:53:59 -05:00
Maxim Cournoyer
65add29c0a
gnu: python-cfn-lint: Do not set PYTHONPATH. 
* gnu/packages/python-web.scm (python-cfn-lint)
[phases]{check}: Do not set PATH nor PYTHONPATH.
 2021-02-01 11:53:59 -05:00
Maxim Cournoyer
011cd722ba
gnu: python-aws-xray-sdk: Do not set PYTHONPATH. 
* gnu/packages/python-web.scm (python-aws-xray-sdk)
[phases]{check}: Do not set PYTHONPATH.
 2021-02-01 11:53:59 -05:00
Maxim Cournoyer
d529a60090
gnu: python-asgiref: Do not set PYTHONPATH. 
* gnu/packages/python-web.scm (python-asgiref)
[phases]{check}: Do not set PYTHONPATH.
 2021-02-01 11:53:58 -05:00
Maxim Cournoyer
6bef08bb81
gnu: python-aiohttp: Do not set PYTHONPATH. 
* gnu/packages/python-web.scm (python-aiohttp)
[phases]{check}: Do not set PYTHONPATH.
 2021-02-01 11:53:58 -05:00
Maxim Cournoyer
905b1b1081
gnu: python2-send2trash: Do not set PYTHONPATH. 
* gnu/packages/python-xyz.scm (python2-send2trash): Do not override the
arguments field.
 2021-02-01 11:53:58 -05:00
Maxim Cournoyer
cdbe4a7c70
gnu: python-flasgger: Do not set PYTHONPATH. 
* gnu/packages/python-check.scm (python-flasgger)
[phases]{check}: Do not set PYTHONPATH.
 2021-02-01 11:53:58 -05:00
Maxim Cournoyer
9e906e8d3b
gnu: python-apispec: Do not set PYTHONPATH. 
* gnu/packages/python-xyz.scm (python-apispec)
{disable-prance-tests}: Remove phase.
[phases]{check}: Do not set PYTHONPATH.  Exclude the tests using the CLI of
Pytest.
 2021-02-01 11:53:58 -05:00
Maxim Cournoyer
a0557f7ed7
gnu: python-rfc3986: Do not set PYTHONPATH. 
* gnu/packages/python-xyz.scm (python-rfc3986)
[arguments]: Remove the '#:modules' argument.
[phases]{check}: Do not set PYTHONPATH.
 2021-02-01 11:53:58 -05:00
Maxim Cournoyer
693a001da7
gnu: python-pbkdf2: Do not set PYTHONPATH. 
* gnu/packages/python-check.scm (python-pbkdf2)
[phases]{check}: Do not set PYTHONPATH.
 2021-02-01 11:53:57 -05:00
Maxim Cournoyer
ce9253b38c
gnu: python-cheetah: Do not set PYTHONPATH. 
* gnu/packages/python-xyz.scm (python-cheetah)
[arguments]: Remove the '#:modules' argument.
[phases]: Delete trailing #t.
{check}: Do not set PATH nor PYTHONPATH.
 2021-02-01 11:53:57 -05:00
Maxim Cournoyer
0f878656fc
gnu: python-pyelftools: Do not set PYTHONPATH. 
* gnu/packages/protobuf.scm (python-pyelftools)
[phases]{set-pythonpath}: Delete phase.
 2021-02-01 11:53:57 -05:00
Maxim Cournoyer
2c890df26a
gnu: python-validictory: Do not set PYTHONPATH. 
* gnu/packages/python-xyz.scm (python-validictory)
[phases]{check}: Do not set PYTHONPATH.
 2021-02-01 11:53:57 -05:00
Maxim Cournoyer
3533016ae3
gnu: python-natsort: Do not set PYTHONPATH. 
* gnu/packages/python-xyz.scm (python-natsort)
[arguments]: Remove the '#:modules' argument.
[phases]{check}: Do not set PYTHONPATH.
 2021-02-01 11:53:57 -05:00
Maxim Cournoyer
0e1cffad12
gnu: python-odfpy: Do not set PYTHONPATH. 
* gnu/packages/python-xyz.scm (python-odfpy)
[phases]{generate-test-data}: Do not set PYTHONPATH.
 2021-02-01 11:53:56 -05:00