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Author SHA1 Message Date
Ricardo Wurmus
084c651cbf
gnu: r-oligo: Update to 1.50.0. 
* gnu/packages/bioconductor.scm (r-oligo): Update to 1.50.0.
 2019-12-15 15:38:53 +01:00
Ricardo Wurmus
79820b9fe9
gnu: r-oligoclasses: Update to 1.48.0. 
* gnu/packages/bioconductor.scm (r-oligoclasses): Update to 1.48.0.
 2019-12-15 15:38:53 +01:00
Ricardo Wurmus
7778e91a2d
gnu: r-geneplotter: Update to 1.64.0. 
* gnu/packages/bioconductor.scm (r-geneplotter): Update to 1.64.0.
 2019-12-15 15:38:53 +01:00
Ricardo Wurmus
7ccbaf1b6e
gnu: r-reportingtools: Update to 2.26.0. 
* gnu/packages/bioconductor.scm (r-reportingtools): Update to 2.26.0.
 2019-12-15 15:38:53 +01:00
Ricardo Wurmus
2e73ea955b
gnu: r-regioner: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-regioner): Update to 1.18.0.
 2019-12-15 15:38:53 +01:00
Ricardo Wurmus
ddd3673928
gnu: r-hpar: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-hpar): Update to 1.28.0.
 2019-12-15 15:38:53 +01:00
Ricardo Wurmus
7a111924ee
gnu: r-annotate: Update to 1.64.0. 
* gnu/packages/bioconductor.scm (r-annotate): Update to 1.64.0.
 2019-12-15 15:38:52 +01:00
Ricardo Wurmus
ce5162d09d
gnu: r-affxparser: Update to 1.58.0. 
* gnu/packages/bioconductor.scm (r-affxparser): Update to 1.58.0.
 2019-12-15 15:38:52 +01:00
Ricardo Wurmus
1693534f76
gnu: r-affycoretools: Update to 1.58.2. 
* gnu/packages/bioconductor.scm (r-affycoretools): Update to 1.58.2.
 2019-12-15 15:38:52 +01:00
Ricardo Wurmus
f561421d04
gnu: r-affycontam: Update to 1.44.0. 
* gnu/packages/bioconductor.scm (r-affycontam): Update to 1.44.0.
 2019-12-15 15:38:52 +01:00
Ricardo Wurmus
c2fa63e905
gnu: r-affycompatible: Update to 1.46.0. 
* gnu/packages/bioconductor.scm (r-affycompatible): Update to 1.46.0.
 2019-12-15 15:38:52 +01:00
Ricardo Wurmus
5d87f12615
gnu: r-affycomp: Update to 1.62.0. 
* gnu/packages/bioconductor.scm (r-affycomp): Update to 1.62.0.
 2019-12-15 15:38:52 +01:00
Ricardo Wurmus
be5e4e9615
gnu: r-biocgenerics: Update to 0.32.0. 
* gnu/packages/bioconductor.scm (r-biocgenerics): Update to 0.32.0.
 2019-12-15 15:38:52 +01:00
Ricardo Wurmus
2c8433ca0a
gnu: r-depecher: Update to 1.2.0. 
* gnu/packages/bioconductor.scm (r-depecher): Update to 1.2.0.
[arguments]: Remove field.
[propagated-inputs]: Remove r-biocparallel; add r-fnn and r-robustbase.
 2019-12-15 15:38:52 +01:00
Ricardo Wurmus
7a62d5e0c2
gnu: Add r-cytoml. 
* gnu/packages/bioconductor.scm (r-cytoml): New variable.
 2019-12-15 15:38:52 +01:00
Ricardo Wurmus
6aedc80514
gnu: Add r-opencyto. 
* gnu/packages/bioconductor.scm (r-opencyto): New variable.
 2019-12-15 15:38:52 +01:00
Ricardo Wurmus
b700b9ec21
gnu: Add r-flowstats. 
* gnu/packages/bioconductor.scm (r-flowstats): New variable.
 2019-12-15 15:38:52 +01:00
Ricardo Wurmus
82c1111745
gnu: Add r-flowworkspace. 
* gnu/packages/bioconductor.scm (r-flowworkspace): New variable.
 2019-12-15 15:38:52 +01:00
Ricardo Wurmus
f1964519e7
gnu: Add r-rprotobuflib. 
* gnu/packages/bioconductor.scm (r-rprotobuflib): New variable.
 2019-12-15 15:38:52 +01:00
Ricardo Wurmus
c8ab9eb1b4
gnu: Add r-flowclust. 
* gnu/packages/bioconductor.scm (r-flowclust): New variable.
 2019-12-15 15:38:52 +01:00
Ricardo Wurmus
0dd4b7d732
gnu: Add r-flowviz. 
* gnu/packages/bioconductor.scm (r-flowviz): New variable.
 2019-12-15 15:38:52 +01:00
Ricardo Wurmus
dbfce8ff5b
gnu: r-rgraphviz: Update to 2.30.0. 
* gnu/packages/graph.scm (r-rgraphviz): Update to 2.30.0.
 2019-12-15 15:38:52 +01:00
Ricardo Wurmus
9d1099eb07
gnu: r-preprocesscore: Update to 1.48.0. 
* gnu/packages/statistics.scm (r-preprocesscore): Update to 1.48.0.
 2019-12-15 15:38:52 +01:00
Ricardo Wurmus
257b3b812c
gnu: Add r-knn-covertree. 
* gnu/packages/cran.scm (r-knn-covertree): New variable.
 2019-12-15 15:38:51 +01:00
Ricardo Wurmus
5aa7e882fa
gnu: Add r-ggplot-multistats. 
* gnu/packages/cran.scm (r-ggplot-multistats): New variable.
 2019-12-15 15:38:51 +01:00
Ricardo Wurmus
f5f440312d
gnu: Add r-ggcyto. 
* gnu/packages/bioconductor.scm (r-ggcyto): New variable.
 2019-12-15 15:38:51 +01:00
Ricardo Wurmus
15ac0c195c
gnu: Add r-ncdfflow. 
* gnu/packages/bioconductor.scm (r-ncdfflow): New variable.
 2019-12-15 15:38:51 +01:00
Ricardo Wurmus
b4aee31dcb
gnu: Add r-cytolib. 
* gnu/packages/bioconductor.scm (r-cytolib): New variable.
 2019-12-15 15:38:51 +01:00
Ricardo Wurmus
b4a22ccaaa
gnu: Add r-multidataset. 
* gnu/packages/bioconductor.scm (r-multidataset): New variable.
 2019-12-15 15:38:51 +01:00
Ricardo Wurmus
e5d722fb4c
gnu: Add r-biocversion. 
* gnu/packages/bioconductor.scm (r-biocversion): New variable.
 2019-12-15 15:38:51 +01:00
Ricardo Wurmus
eb15df8dea
gnu: Add r-qqman. 
* gnu/packages/cran.scm (r-qqman): New variable.
 2019-12-15 15:38:51 +01:00
Ricardo Wurmus
f431d5e299
guix: Upgrade to Bioconductor 3.10. 
* guix/build-system/r.scm (bioconductor-uri): Switch to version 3.10.
* guix/import/cran.scm (%bioconductor-version): Same.
 2019-12-15 15:38:51 +01:00
Ricardo Wurmus
b5b6e74e15
gnu: Add r-idpmisc. 
* gnu/packages/cran.scm (r-idpmisc): New variable.
 2019-12-15 15:38:51 +01:00
Björn Höfling
58c3a4f596
gnu: java-svg-salamander: Return #t from snippet. 
* gnu/packages/java.scm (java-svg-salamander)[origin]:
Return #t from snippet.
 2019-12-15 12:31:35 +01:00
Brett Gilio
4fb8e2744a
gnu: emacs-cider: Update home-page. 
* gnu/packages/emacs-xyz.scm (emacs-cider)[home-page]: Change to https://cider.mx/.
 2019-12-14 18:46:06 -06:00
Brett Gilio
7d4d881266
gnu: emacs-cider: Update to 0.23.0. 
* gnu/packages/emacs-xyz.scm (emacs-cider): Update to 0.23.0.
[propagated-inputs]: Add emacs-seq, emacs-parseedn.
 2019-12-14 18:45:22 -06:00
Brett Gilio
47a9a59270
gnu: Add emacs-parseedn. 
* gnu/packages/emacs-xyz.scm (emacs-parseedn): New variable.
 2019-12-14 18:44:50 -06:00
Brett Gilio
586e1611b9
gnu: Add emacs-parseclj. 
* gnu/packages/emacs-xyz.scm (emacs-parseclj): New variable.
 2019-12-14 18:44:25 -06:00
Konrad Hinsen
4ac5d4fee1
gnu: Add gfortran-toolchain 
* gnu/packages/commencement.scm: (gfortran-toolchain): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-12-15 00:34:05 +01:00
Ludovic Courtès
178e550034
gnu: bootloaders: Avoid #:select on (gnu packages …) module. 
* gnu/packages/bootloaders.scm: Remove use of #:select.
 2019-12-15 00:34:05 +01:00
Ludovic Courtès
5f9cd63eb0
base64: Do not use (rnrs). 
* guix/base64.scm: Remove #:use-module clauses for (rnrs) and (srfi
srfi-13).  Add other #:use-module clauses.
(fxbit-field): Define as an alias for 'bit-field.
(fx=?, fx+, mod): New aliases.
(assert): New macro.
 2019-12-15 00:34:05 +01:00
Ludovic Courtès
428561aa63
challenge: Fix type mismatch when comparing to a local hash. 
* guix/scripts/challenge.scm (call-with-mismatches)[narinfo1]: When
LOCAL-HASH is true, call 'narinfo-hash->sha256' and use 'bytevector=?'
instead of 'string=?'.
 2019-12-15 00:34:05 +01:00
Brett Gilio
9d97a11f04
gnu: emacs-telega: Update to 0.5.3-1. 
* gnu/packages/emacs-xyz.scm (emacs-telega): Update to 0.5.3-1.
[version]: Correct the version number used in the package elisp code itself.
 2019-12-14 14:07:22 -06:00
Alex Griffin
d900e1f675
gnu: Add htmlcxx. 
* gnu/packages/web.scm (htmlcxx): New variable.
 2019-12-14 13:22:54 -06:00
Brett Gilio
e9d8dee6c3
gnu: emacs-doom-themes: Update to 2.1.6-2. 
* gnu/packages/emacs-xyz.scm (emacs-doom-themes): Update to 2.1.6-2.
[arguments]: Disable byte-compilation regarding issue in upstream.
<https://github.com/hlissner/emacs-doom-themes/issues/314>.
 2019-12-14 13:06:07 -06:00
Julien Lepiller
5c1bd7b8d1
gnu: josm: Update to 15553. 
* gnu/packages/geo.scm (josm): Update to 15553.
 2019-12-14 17:43:17 +01:00
Mathieu Othacehe
94de8d0a7f
gnu: Add u-boot-pine64-lts-bootloader. 
* gnu/bootloader/u-boot.scm (u-boot-pine64-lts-bootloader): New variable.
 2019-12-14 17:41:10 +01:00
Mathieu Othacehe
db78fc0679
gnu: bootloaders: Fix make-u-boot-sunxi64-package cross-compilation. 
* gnu/packages/bootloaders.scm (make-u-boot-sunxi64-package)[arguments]:
Search in native-inputs to fix cross-compilation.
 2019-12-14 17:41:10 +01:00
Mathieu Othacehe
af58b275c9
gnu: Add u-boot-pine64-lts. 
* gnu/packages/bootloaders.scm (u-boot-pine64-lts): New variable.
 2019-12-14 17:41:09 +01:00
Ricardo Wurmus
e31ec53ed8
import: cran: Recognize LGPL 2.1+. 
* guix/import/cran.scm (string->license): Add case for lgpl2.1+.
 2019-12-14 13:35:58 +01:00