Ricardo Wurmus
0b507db3c0
gnu: r-tm: Update to 0.7-13.
...
* gnu/packages/cran.scm (r-tm): Update to 0.7-13.
Change-Id: I970c336d647911efbfa4e554ef717c732c3a6bba
2024-04-22 12:34:15 +02:00
Ricardo Wurmus
f5c0f54bdb
gnu: r-targets: Update to 1.7.0.
...
* gnu/packages/cran.scm (r-targets): Update to 1.7.0.
[propagated-inputs]: Remove r-digest.
Change-Id: I72c95351da2fe453014d25e4403a979dba9b35ec
2024-04-22 12:34:15 +02:00
Ricardo Wurmus
8011581794
gnu: r-tarchetypes: Update to 0.9.0.
...
* gnu/packages/cran.scm (r-tarchetypes): Update to 0.9.0.
[propagated-inputs]: Remove r-digest; add r-secretbase.
Change-Id: Ie164cebdf0bab4ef128f0023dbe73a0711893a8c
2024-04-22 12:34:15 +02:00
Ricardo Wurmus
6a960987ce
gnu: r-factominer: Update to 2.11.
...
* gnu/packages/cran.scm (r-factominer): Update to 2.11.
Change-Id: Id24133b66e55ef6b41710dbc98cbb3daf2ef4b9f
2024-04-22 12:34:14 +02:00
Ricardo Wurmus
d6ee393bad
gnu: r-seriation: Update to 1.5.5.
...
* gnu/packages/cran.scm (r-seriation): Update to 1.5.5.
Change-Id: I1632302f747d4f64e0b26baf9213525c05b6bacb
2024-04-22 12:34:14 +02:00
Ricardo Wurmus
22030634ef
gnu: python-commonroad-io: Relax requirements.
...
* gnu/packages/simulation.scm (python-commonroad-io)[arguments]: Accept 3.20.2
when 3.20.1 is wanted.
Change-Id: I5ad0689f827eda8ec1a7ec74008d04fb6d9f5870
2024-04-22 11:29:31 +02:00
Ricardo Wurmus
c0c713be66
gnu: python-omegaconf: Fix build system errors.
...
* gnu/packages/python-xyz.scm (python-omegaconf)[arguments]: Fix syntax error
in version specification; do not trigger errors on deprecation warnings.
Change-Id: Ida873c11255ffb65d888378cdd77a9205163016a
2024-04-22 11:29:31 +02:00
Ricardo Wurmus
a78de8f792
gnu: python-deeptools: Replace python-nose with python-pytest.
...
* gnu/packages/bioinformatics.scm (python-deeptools)[native-inputs]: Replace
python-nose with python-pytest.
Change-Id: Icba4ed3a464bfa36616aabe2cbbb26bfabec40aa
2024-04-22 11:29:31 +02:00
Ricardo Wurmus
f0268853de
gnu: java-easymock-class-extension: Use java-asm-8.
...
This is necessary to avoid invalid instructions coming from the incompatible
build of java-asm.
* gnu/packages/java.scm (java-easymock-class-extension)[inputs]: Replace
java-asm with java-asm-8.
Change-Id: Iff11a54fe62ba71a6d5e62fe80c08b1539c6cee0
2024-04-22 11:29:31 +02:00
Ricardo Wurmus
d6af13222e
gnu: python-pydantic-2: Ignore sensitive tests.
...
* gnu/packages/python-xyz.scm (python-pydantic-2)[arguments]: Ignore north
star tests.
Change-Id: Ic305f95f8d1399a4d777dad35fcee9e28f16c907
2024-04-22 11:29:31 +02:00
Ricardo Wurmus
2632660295
gnu: python-asdf-astropy: Add missing test inputs.
...
* gnu/packages/astronomy.scm (python-asdf-astropy)[native-inputs]: Add
python-pytest and python-pytest-xdist.
Change-Id: I1b08cf3937d4d17e034bebf6c1e971e43ca79839
2024-04-22 11:29:30 +02:00
Ricardo Wurmus
789286ebd9
gnu: python-zarr: Update to 2.17.2.
...
* gnu/packages/python-xyz.scm (python-zarr): Update to 2.17.2.
[arguments]: Delete two flaky tests.
Change-Id: I1ab1c90f17d17a03c6cd76bbeb9112df741cc9c6
2024-04-22 11:29:30 +02:00
Ricardo Wurmus
e6586f55e0
gnu: python-xarray-dataclasses: Add missing test input.
...
* gnu/packages/python-science.scm (python-xarray-dataclasses)[native-inputs]:
Add python-pytest.
Change-Id: I137d49380d772f11f75837aa9a915ced85cfc1a2
2024-04-22 11:29:30 +02:00
Ricardo Wurmus
7244fb26bd
gnu: cpplint: Use pyproject-build-system.
...
* gnu/packages/cpp.scm (cpplint)[build-system]: Use pyproject-build-system.
[arguments]: Remove custom 'check phase.
Change-Id: I270de2cafe75ef2d7280dee884a0aeb060f2aa32
2024-04-22 11:29:30 +02:00
Ricardo Wurmus
061c7bc1ca
gnu: python-pandas-2: Skip expensive tests.
...
* gnu/packages/python-science.scm (python-pandas-2)[arguments]: Set PANDAS_CI
variable.
Change-Id: I7c400ff260b3c833be1a55a30de021a81a5cbacb
2024-04-22 11:29:30 +02:00
Nicolas Graves
ff2d0ecfca
gnu: Add python-pandas-2.
...
* gnu/packages/python-science.scm (python-pandas-2): New variable.
Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
Change-Id: I7f0510f9021d4eac3c981e5e58f73dc3ec7efd2f
2024-04-22 11:29:30 +02:00
Nicolas Graves
2b5cb248d3
gnu: Add python-pytest-next.
...
* gnu/packages/check.scm (python-pytest-next): New variable.
2024-04-22 11:29:30 +02:00
Nicolas Graves
925e6d4072
gnu: python-contourpy: Update to 1.1.1.
...
* gnu/packages/python-xyz.scm (python-contourpy): Update to 1.1.1.
Change-Id: I31ac27bb7f41f04c82baba2650012d4730a4b684
2024-04-22 11:29:30 +02:00
Nicolas Graves
43965c93ae
gnu: python-openpyxl: Update to 3.0.10.
...
* gnu/packages/python-xyz.scm (python-openpyxl): Update to 3.0.10.
[build-system]: Use pyproject-build-system.
[arguments]: Delete check phase replacement.
Change-Id: I1a537050f1e9f109189150d0d73e87bbd87dcb00
2024-04-22 11:29:30 +02:00
Nicolas Graves
118b2f79f8
gnu: python-pytest-xdist: Use pyproject-build-system.
...
* gnu/packages/check.scm (python-pytest-xdist): Use pyproject-build-system.
2024-04-22 11:29:30 +02:00
Nicolas Graves
2528aabf6f
gnu: python-jinja2: Update to 3.1.2.
...
* gnu/packages/python-xyz.scm (python-jinja2): Update to 3.1.2. Format.
[build-system]: Use pyproject-build-system.
[arguments]: Remove uneeded argument.
2024-04-22 11:29:30 +02:00
Nicolas Graves
1039ec03be
gnu: python-pyproject-metadata: Update to 0.7.1.
...
* gnu/packages/python-xyz.scm (python-pyproject-metadata): Update to 0.7.1.
2024-04-22 11:29:30 +02:00
Ricardo Wurmus
e0e224eae6
gnu: Add meson-python/newer.
...
* gnu/packages/build-tools.scm (meson-python/newer): New variable.
Change-Id: I5f34a1abdffcc2e782a2956c199f1c303911069c
2024-04-22 11:29:30 +02:00
Nicolas Graves
ce953927fd
gnu: meson/newer: Update to 1.2.1.
...
* gnu/packages/build-tools.scm (meson/newer): Update to 1.2.1.
2024-04-22 11:29:30 +02:00
Ricardo Wurmus
fbfd58b5bf
gnu: Add python-pims.
...
* gnu/packages/image-processing.scm (python-pims): New variable.
Change-Id: I33e89dd865a38b526a1f766cf321a6c67a170a36
2024-04-22 11:29:30 +02:00
Ricardo Wurmus
7ca1a02030
gnu: Add python-spatial-image.
...
* gnu/packages/image-processing.scm (python-spatial-image): New variable.
Change-Id: I0e2bbfb94499aca71b33703153ad408530b60658
2024-04-22 11:29:29 +02:00
Ricardo Wurmus
81eb92105f
gnu: Add python-xarray-datatree.
...
* gnu/packages/python-science.scm (python-xarray-datatree): New variable.
Change-Id: I403f241b6daae8b5c835f4517a1dceca0393f8e6
2024-04-22 11:29:29 +02:00
Ricardo Wurmus
3c00ef084b
gnu: Add python-xarray-dataclasses.
...
* gnu/packages/python-science.scm (python-xarray-dataclasses): New variable.
Change-Id: I55f258e36ea70a2efb142bd652a81d70771a457c
2024-04-22 11:29:29 +02:00
Ricardo Wurmus
15f4363df0
gnu: Add python-slicerator.
...
* gnu/packages/python-xyz.scm (python-slicerator): New variable.
Change-Id: I9f24707f16cb34d25f6423b03fd07ea122d55064
2024-04-22 11:29:29 +02:00
Ricardo Wurmus
5ac831d81b
gnu: python-nbclient: Update to 0.6.6.
...
* gnu/packages/jupyter.scm (python-nbclient): Update to 0.6.6.
[build-system]: Use pyproject-build-system.
[propagated-inputs]: Remove python-nest-asyncio; add python-jupyter-core.
Change-Id: Idb70e781c508be389f08c0cab439644852b81577
2024-04-22 11:29:29 +02:00
Ricardo Wurmus
d1e66d2ddf
gnu: Add python-ipfsspec.
...
* gnu/packages/python-xyz.scm (python-ipfsspec): New variable.
Change-Id: I1fe0c2523616b9567501ef369c07b61fcacbee81
2024-04-22 11:29:29 +02:00
Alexis Simon
78d24b78d3
gnu: Add python-cyvcf2.
...
* gnu/packages/bioinformatics.scm (python-cyvcf2): New variable.
Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
Change-Id: I0db07e7b5840f5c1f5c68512ffabb3d6b39ab95c
2024-04-22 11:29:29 +02:00
Ricardo Wurmus
8e5186ca9f
gnu: r-bayseq: Update to 2.36.2.
...
* gnu/packages/bioconductor.scm (r-bayseq): Update to 2.36.2.
Change-Id: Ic709181286a25fb2540d73991196cd54302f6fa2
2024-04-22 11:29:29 +02:00
Ricardo Wurmus
1ee8d23e8f
gnu: r-gsva: Update to 1.50.5.
...
* gnu/packages/bioconductor.scm (r-gsva): Update to 1.50.5.
Change-Id: I18584e8766e8377f18321b4a4991edbbc933cbe2
2024-04-22 11:29:29 +02:00
Ricardo Wurmus
32ff790ac4
gnu: r-alevinqc: Update to 1.18.1.
...
* gnu/packages/bioconductor.scm (r-alevinqc): Update to 1.18.1.
Change-Id: I84abb3751c44f4679ebf6c5c39f3b7d0027f002e
2024-04-22 11:29:29 +02:00
Ricardo Wurmus
fa8472f5be
gnu: r-lme4: Update to 1.1-35.3.
...
* gnu/packages/statistics.scm (r-lme4): Update to 1.1-35.3.
Change-Id: I20c5839dd74fc596406e129086cf58fb78d06297
2024-04-22 11:29:29 +02:00
Ricardo Wurmus
26ebfaa9e4
gnu: r-diptest: Update to 0.77-1.
...
* gnu/packages/statistics.scm (r-diptest): Update to 0.77-1.
Change-Id: I4f8c677984f68d3d8a093d5bdd497352e4c8d4c4
2024-04-22 11:29:29 +02:00
Ricardo Wurmus
35b317eaa2
gnu: r-matrixstats: Update to 1.3.0.
...
* gnu/packages/statistics.scm (r-matrixstats): Update to 1.3.0.
Change-Id: I660f58800789f1e7e0a2380f3503597b62c0e5ba
2024-04-22 11:29:29 +02:00
Ricardo Wurmus
de274b5b72
gnu: r-rcpparmadillo: Update to 0.12.8.2.1.
...
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.12.8.2.1.
Change-Id: Ibfc58ce4512ee1c50f9041708ae18b296f3987b1
2024-04-22 11:29:29 +02:00
Ricardo Wurmus
1edfcf59fa
gnu: r-testthat: Update to 3.2.1.1.
...
* gnu/packages/statistics.scm (r-testthat): Update to 3.2.1.1.
Change-Id: I57dbc93ab3dff959c3cb468e0fc71cf5865c4c65
2024-04-22 11:29:29 +02:00
Ricardo Wurmus
d3e8771e89
gnu: r-crul: Update to 1.4.2.
...
* gnu/packages/cran.scm (r-crul): Update to 1.4.2.
Change-Id: I982b33d77d6a14803ad398c106131558e512f207
2024-04-22 11:29:29 +02:00
Ricardo Wurmus
20865b87ae
gnu: r-paws-common: Update to 0.7.2.
...
* gnu/packages/cran.scm (r-paws-common): Update to 0.7.2.
Change-Id: I48bc944013c82dcdcdc2a2063b3c4f925c733c03
2024-04-22 11:29:29 +02:00
Ricardo Wurmus
5b0bc82f36
gnu: r-tensorflow: Update to 2.16.0.
...
* gnu/packages/cran.scm (r-tensorflow): Update to 2.16.0.
Change-Id: I6f356117eaa78961a8ea6689b08a8dae1778de03
2024-04-22 11:29:28 +02:00
Ricardo Wurmus
0756a2fb0d
gnu: r-pkgdown: Update to 2.0.8.
...
* gnu/packages/cran.scm (r-pkgdown): Update to 2.0.8.
Change-Id: Ib96ecbb5a78e8a53ecceae9c7b9e814690009986
2024-04-22 11:29:28 +02:00
Ricardo Wurmus
8aa1f5e36b
gnu: r-mlr3misc: Update to 0.15.0.
...
* gnu/packages/cran.scm (r-mlr3misc): Update to 0.15.0.
Change-Id: I96f607787c4816c849ad7fa23ebb62855bf4f24e
2024-04-22 11:29:28 +02:00
Ricardo Wurmus
9f3e235a25
gnu: r-tidytext: Update to 0.4.2.
...
* gnu/packages/cran.scm (r-tidytext): Update to 0.4.2.
Change-Id: I3ec30c70dee2b8ab719a1435db5e97354bc93459
2024-04-22 11:29:28 +02:00
Ricardo Wurmus
dc4ade072a
gnu: r-butcher: Update to 0.3.4.
...
* gnu/packages/cran.scm (r-butcher): Update to 0.3.4.
Change-Id: I31145414549fb55b36b97e823797d645a4248dde
2024-04-22 11:29:28 +02:00
Ricardo Wurmus
4ab3ffa950
gnu: r-dunn-test: Update to 1.3.6.
...
* gnu/packages/cran.scm (r-dunn-test): Update to 1.3.6.
Change-Id: Ic8efd6dfd893719522f1c8dab05a782807a25c09
2024-04-22 11:29:28 +02:00
Ricardo Wurmus
aa1b8b4940
gnu: r-tuner: Update to 1.4.7.
...
* gnu/packages/cran.scm (r-tuner): Update to 1.4.7.
Change-Id: I709c7b844f67977b0fe367ff21196d221884761e
2024-04-22 11:29:28 +02:00
Ricardo Wurmus
f434613850
gnu: r-uwot: Update to 0.2.1.
...
* gnu/packages/cran.scm (r-uwot): Update to 0.2.1.
[native-inputs]: Add r-knitr.
Change-Id: Ife200a7ee6316f7accdb596e8bdb709b65461ba2
2024-04-22 11:29:28 +02:00
