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138077 commits

Author SHA1 Message Date
Ricardo Wurmus
0ee810eb3b
gnu: r-dose: Update to 3.30.1.
* gnu/packages/bioconductor.scm (r-dose): Update to 3.30.1.

Change-Id: I7839680a6cc3b11083c61c05c392435b985bd522
2024-07-17 22:38:36 +02:00
Ricardo Wurmus
bbdaf10a18
gnu: r-residualmatrix: Update to 1.14.1.
* gnu/packages/bioconductor.scm (r-residualmatrix): Update to 1.14.1.

Change-Id: Ibeed009e6ae9892dabb90e714c014f5df0748a3d
2024-07-17 22:38:36 +02:00
Ricardo Wurmus
012883f329
gnu: r-goseq: Update to 1.56.0.
* gnu/packages/bioconductor.scm (r-goseq): Update to 1.56.0.

Change-Id: I96328b6c9ee60f8ecfc218861da8343c15979270
2024-07-17 22:38:36 +02:00
Ricardo Wurmus
52898de521
gnu: r-apeglm: Update to 1.26.1.
* gnu/packages/bioconductor.scm (r-apeglm): Update to 1.26.1.

Change-Id: I6feea7900ef40e81cecfa48a6b1bc14ebbafc38c
2024-07-17 22:38:36 +02:00
Ricardo Wurmus
60c809cd0b
gnu: r-qfeatures: Update to 1.14.1.
* gnu/packages/bioconductor.scm (r-qfeatures): Update to 1.14.1.
[propagated-inputs]: Add r-reshape2.

Change-Id: Id30163d56abcb36778f32279418c10e63a2866b9
2024-07-17 22:38:36 +02:00
Ricardo Wurmus
3169281f54
gnu: r-oligo: Update to 1.68.2.
* gnu/packages/bioconductor.scm (r-oligo): Update to 1.68.2.

Change-Id: Ieb77c06575edf036355b3cb0085f3dfae8bfb9c5
2024-07-17 22:38:36 +02:00
Ricardo Wurmus
3f87a86b9f
gnu: r-zellkonverter: Update to 1.14.1.
* gnu/packages/bioconductor.scm (r-zellkonverter): Update to 1.14.1.

Change-Id: I7b50645115df19dc0c1b9ba94c7f4f4e00cf51f5
2024-07-17 22:38:36 +02:00
Ricardo Wurmus
a36b63d144
gnu: r-txdbmaker: Update to 1.0.1.
* gnu/packages/bioconductor.scm (r-txdbmaker): Update to 1.0.1.

Change-Id: Id414fc98b78be2f876c2cc2d1157403f5e7285a6
2024-07-17 22:38:36 +02:00
Ricardo Wurmus
e49bd5772f
gnu: r-stringdb: Update to 2.16.4.
* gnu/packages/bioconductor.scm (r-stringdb): Update to 2.16.4.

Change-Id: I0d8f0557d914da617cdf55b180484c08c6bc1e2b
2024-07-17 22:38:36 +02:00
Ricardo Wurmus
160dbc754f
gnu: r-spectra: Update to 1.14.1.
* gnu/packages/bioconductor.scm (r-spectra): Update to 1.14.1.

Change-Id: I679be137d79b001c91f2cedc3cf10bb95d517102
2024-07-17 22:38:35 +02:00
Ricardo Wurmus
8aa069af35
gnu: r-sesame: Update to 1.22.2.
* gnu/packages/bioconductor.scm (r-sesame): Update to 1.22.2.
[propagated-inputs]: Remove r-illuminaio.

Change-Id: I9f1d7893351d0396c16f45e01c160534118d2f28
2024-07-17 22:38:35 +02:00
Ricardo Wurmus
b867004a25
gnu: r-mmuphin: Update to 1.18.1.
* gnu/packages/bioconductor.scm (r-mmuphin): Update to 1.18.1.

Change-Id: Ib282af9250fb29e2d40f62b8bf93d9c3fc400a98
2024-07-17 22:38:35 +02:00
Ricardo Wurmus
d72e4d2764
gnu: r-limma: Update to 3.60.3.
* gnu/packages/bioconductor.scm (r-limma): Update to 3.60.3.

Change-Id: Iae5b2769ac2011b1ec185be45f12a180e11cf87b
2024-07-17 22:38:35 +02:00
Ricardo Wurmus
065d781b1c
gnu: r-keggrest: Update to 1.44.1.
* gnu/packages/bioconductor.scm (r-keggrest): Update to 1.44.1.

Change-Id: I3aad773f4295755463d293f0bd0770a236a4cf2d
2024-07-17 22:38:35 +02:00
Ricardo Wurmus
b3d41e3268
gnu: r-gypsum: Update to 1.0.1.
* gnu/packages/bioconductor.scm (r-gypsum): Update to 1.0.1.
[propagated-inputs]: Remove r-paws-storage.

Change-Id: I2100aec90f1b3662d21f38d9c3057273c1885f13
2024-07-17 22:38:35 +02:00
Ricardo Wurmus
98cb090e1c
gnu: r-gsva: Update to 1.52.3.
* gnu/packages/bioconductor.scm (r-gsva): Update to 1.52.3.

Change-Id: I7a9f289261890eef5d414f0aee133e4c4defa5ae
2024-07-17 22:38:35 +02:00
Ricardo Wurmus
42787f343d
gnu: r-genomicranges: Update to 1.56.1.
* gnu/packages/bioconductor.scm (r-genomicranges): Update to 1.56.1.

Change-Id: I547ffe5e04cab142068cc2c6e02008047e382999
2024-07-17 22:38:35 +02:00
Ricardo Wurmus
d803e1bd14
gnu: r-genomeinfodb: Update to 1.40.1.
* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.40.1.

Change-Id: I8b2c267e45df617d87ec9435f1b0915d131b2870
2024-07-17 22:38:35 +02:00
Ricardo Wurmus
136a454ff2
gnu: r-enmix: Update to 1.40.2.
* gnu/packages/bioconductor.scm (r-enmix): Update to 1.40.2.

Change-Id: I48d2d72ddc6eff87c6416b4dd883acc408ec811d
2024-07-17 22:38:35 +02:00
Ricardo Wurmus
2c6b509327
gnu: r-champ: Update to 2.34.0.
* gnu/packages/bioconductor.scm (r-champ): Update to 2.34.0.

Change-Id: Iee7cd3002bb0f17d0f270aa5b1398050574bd539
2024-07-17 22:38:35 +02:00
Ricardo Wurmus
a7fedc7fa0
gnu: r-biostrings: Update to 2.72.1.
* gnu/packages/bioconductor.scm (r-biostrings): Update to 2.72.1.

Change-Id: Ic9bb3cb2f7cc5312dc4396211faea3eddab758a2
2024-07-17 22:38:35 +02:00
Ricardo Wurmus
07086a4275
gnu: r-biomart: Update to 2.60.1.
* gnu/packages/bioconductor.scm (r-biomart): Update to 2.60.1.

Change-Id: I03a38932c581f8e6e5d7c4f694aac3f693d52a15
2024-07-17 22:38:35 +02:00
Ricardo Wurmus
68a314d470
gnu: r-dmrcate: Update to 3.0.3.
* gnu/packages/bioconductor.scm (r-dmrcate): Update to 3.0.3.

Change-Id: I5807264b3bb744f292673688e8b45dae816ebafa
2024-07-17 22:38:35 +02:00
Ricardo Wurmus
775fa6631d
gnu: r-delayedarray: Update to 0.30.1.
* gnu/packages/bioconductor.scm (r-delayedarray): Update to 0.30.1.

Change-Id: I14176f2b7111ce22560ab36f59a950a28c0a14cd
2024-07-17 22:38:35 +02:00
Ricardo Wurmus
1fc6f89cb3
gnu: r-decoupler: Update to 2.10.0.
* gnu/packages/bioconductor.scm (r-decoupler): Update to 2.10.0.

Change-Id: I6fbfefb53e907106cf33e6674f984a3e9bbfdf42
2024-07-17 22:38:35 +02:00
Ricardo Wurmus
349925f04b
gnu: r-asics: Update to 2.20.1.
* gnu/packages/bioconductor.scm (r-asics): Update to 2.20.1.

Change-Id: I24dabd37217ba4e904f1f5c7a6f4aed69076a91f
2024-07-17 22:38:35 +02:00
Ricardo Wurmus
8bd94e42ba
gnu: r-alabaster-se: Update to 1.4.1.
* gnu/packages/bioconductor.scm (r-alabaster-se): Update to 1.4.1.

Change-Id: I758d1c6662e1b8a253e6c99b1679e14599df6670
2024-07-17 22:38:35 +02:00
Ricardo Wurmus
a23363ae59
gnu: r-alabaster-ranges: Update to 1.4.2.
* gnu/packages/bioconductor.scm (r-alabaster-ranges): Update to 1.4.2.

Change-Id: I7f02af58acd00672db10bd4de75f863bba9d7c06
2024-07-17 22:38:35 +02:00
Ricardo Wurmus
a9e3312327
gnu: r-alabaster-matrix: Update to 1.4.2.
* gnu/packages/bioconductor.scm (r-alabaster-matrix): Update to 1.4.2.

Change-Id: I49d29c3382153b0ecb32dd1053e8b7e62b8cd0bd
2024-07-17 22:38:35 +02:00
Ricardo Wurmus
12ccddaf9a
gnu: r-alabaster-base: Update to 1.4.2.
* gnu/packages/bioconductor.scm (r-alabaster-base): Update to 1.4.2.

Change-Id: I919fdb38450e527032e77be209d2a95f3e5c5484
2024-07-17 22:38:35 +02:00
Ricardo Wurmus
6fbd56a4d7
gnu: r-genelendatabase: Update to 1.40.1.
* gnu/packages/bioconductor.scm (r-genelendatabase): Update to 1.40.1.
[propagated-inputs]: Add r-txdbmaker.

Change-Id: I3f9a13020f4277ea1e898af371dd0e3d8dd32f70
2024-07-17 22:38:35 +02:00
Ricardo Wurmus
90340ecc07
gnu: r-mumin: Update to 1.48.4.
* gnu/packages/statistics.scm (r-mumin): Update to 1.48.4.

Change-Id: Ie09d88a6200eb86c208c5dc5c9aee9ee52699756
2024-07-17 22:38:34 +02:00
Ricardo Wurmus
9a20f46def
gnu: r-clubsandwich: Update to 0.5.11.
* gnu/packages/statistics.scm (r-clubsandwich): Update to 0.5.11.
[propagated-inputs]: Add r-lifecycle.

Change-Id: Ia80ff5befd136c5f3893533e0e41bf95fca61a22
2024-07-17 22:38:34 +02:00
Ricardo Wurmus
b11e662121
gnu: r-pbkrtest: Update to 0.5.3.
* gnu/packages/statistics.scm (r-pbkrtest): Update to 0.5.3.
[propagated-inputs]: Add r-doby.

Change-Id: I5206038d879359d6c36722b18895a51230d4cdd1
2024-07-17 22:38:34 +02:00
Ricardo Wurmus
400233e601
gnu: r-lme4: Update to 1.1-35.4.
* gnu/packages/statistics.scm (r-lme4): Update to 1.1-35.4.

Change-Id: I29581774b84b3313059729b83f1ffce00da41ae0
2024-07-17 22:38:34 +02:00
Ricardo Wurmus
4fd182a223
gnu: r-quantreg: Update to 5.98.
* gnu/packages/statistics.scm (r-quantreg): Update to 5.98.

Change-Id: Ic46fc2cd3bb5819015b8f2b738f7843331c6b9a3
2024-07-17 22:38:34 +02:00
Ricardo Wurmus
2aae18a38f
gnu: r-minqa: Update to 1.2.7.
* gnu/packages/statistics.scm (r-minqa): Update to 1.2.7.

Change-Id: I3e50094f3cb8ef30c2a40cce781d5a5292a0ecc9
2024-07-17 22:38:34 +02:00
Ricardo Wurmus
cb52c44323
gnu: r-vgam: Update to 1.1-11.
* gnu/packages/statistics.scm (r-vgam): Update to 1.1-11.

Change-Id: I2900b06c64a38b38014344a84a282849ebfd0ca0
2024-07-17 22:38:34 +02:00
Ricardo Wurmus
1b919cfafb
gnu: r-robustbase: Update to 0.99-3.
* gnu/packages/statistics.scm (r-robustbase): Update to 0.99-3.

Change-Id: I31c42a3760a5487861aa7de4127abe012e0ba04d
2024-07-17 22:38:34 +02:00
Ricardo Wurmus
aa1ea9f2b4
gnu: r-hmisc: Update to 5.1-3.
* gnu/packages/statistics.scm (r-hmisc): Update to 5.1-3.

Change-Id: I6f80f2408564769e83a559066a85c9590f2d7578
2024-07-17 22:38:34 +02:00
Ricardo Wurmus
98e8c728ed
gnu: r-biased-urn: Update to 2.0.12.
* gnu/packages/statistics.scm (r-biased-urn): Update to 2.0.12.

Change-Id: Ie54c35847a3e593ee1986aac46f704be44097b99
2024-07-17 22:38:34 +02:00
Ricardo Wurmus
c06e3df65a
gnu: r-mvtnorm: Update to 1.2-5.
* gnu/packages/statistics.scm (r-mvtnorm): Update to 1.2-5.

Change-Id: Iccee929065c6984e414d797ec8ced6576fd11d11
2024-07-17 22:38:34 +02:00
Ricardo Wurmus
b32212664b
gnu: r-sparsem: Update to 1.84.
* gnu/packages/statistics.scm (r-sparsem): Update to 1.84.
[native-inputs]: Add r-knitr.

Change-Id: I79262a62aaa58bc58279b3cef035f9dd95a81674
2024-07-17 22:38:34 +02:00
Ricardo Wurmus
c2881e666f
gnu: r-segmented: Update to 2.1-0.
* gnu/packages/statistics.scm (r-segmented): Update to 2.1-0.

Change-Id: Ia51335d1de66473e1450853e0ead881ee500977d
2024-07-17 22:38:34 +02:00
Ricardo Wurmus
fba195416f
gnu: r-xml: Update to 3.99-0.17.
* gnu/packages/statistics.scm (r-xml): Update to 3.99-0.17.

Change-Id: I32d381e9466e19cf93eef28322541fd904a48a0a
2024-07-17 22:38:34 +02:00
Ricardo Wurmus
830f2108dd
gnu: r-rsqlite: Update to 2.3.7.
* gnu/packages/statistics.scm (r-rsqlite): Update to 2.3.7.

Change-Id: I6065ee2dec5d0755400f8e9f14322d202b60a623
2024-07-17 22:38:34 +02:00
Ricardo Wurmus
cf3a91de2b
gnu: r-rmarkdown: Update to 2.27.
* gnu/packages/statistics.scm (r-rmarkdown): Update to 2.27.

Change-Id: I26c82e9f6f00a1c944385a07a833f9dd1f65dbef
2024-07-17 22:38:34 +02:00
Ricardo Wurmus
b9d024202a
gnu: r-rcpparmadillo: Update to 0.12.8.4.0.
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.12.8.4.0.

Change-Id: Ic331eda06e812f325c7f575228cd36219059da2d
2024-07-17 22:38:34 +02:00
Ricardo Wurmus
b191e195a3
gnu: r-openssl: Update to 2.2.0.
* gnu/packages/statistics.scm (r-openssl): Update to 2.2.0.

Change-Id: Ie5c92ec7a2088894e894b5b7e821174c70282da0
2024-07-17 22:38:34 +02:00
Ricardo Wurmus
86783de027
gnu: r-roxygen2: Update to 7.3.2.
* gnu/packages/statistics.scm (r-roxygen2): Update to 7.3.2.

Change-Id: I9b78c4cbb38861317a6d6033aa0de93fff8c91c6
2024-07-17 22:38:34 +02:00