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Author SHA1 Message Date
Ricardo Wurmus
10dd00af24
gnu: r-rdpack: Update to 2.1.3. 
* gnu/packages/cran.scm (r-rdpack): Update to 2.1.3.
 2022-01-05 21:18:02 +01:00
Ricardo Wurmus
2fdf20c0f0
gnu: r-rbibutils: Update to 2.2.7. 
* gnu/packages/cran.scm (r-rbibutils): Update to 2.2.7.
 2022-01-05 21:18:02 +01:00
Ricardo Wurmus
7a5fdca2a0
gnu: r-renv: Update to 0.15.0. 
* gnu/packages/cran.scm (r-renv): Update to 0.15.0.
 2022-01-05 21:18:01 +01:00
Ricardo Wurmus
22e6c2a017
gnu: r-dtplyr: Update to 1.2.0. 
* gnu/packages/cran.scm (r-dtplyr): Update to 1.2.0.
 2022-01-05 21:18:01 +01:00
Ricardo Wurmus
8f9ab3cfdc
gnu: r-openxlsx: Update to 4.2.5. 
* gnu/packages/cran.scm (r-openxlsx): Update to 4.2.5.
 2022-01-05 21:18:01 +01:00
Ricardo Wurmus
61949e5d3a
gnu: r-arules: Update to 1.7-2. 
* gnu/packages/cran.scm (r-arules): Update to 1.7-2.
 2022-01-05 21:18:01 +01:00
Ricardo Wurmus
42f26beb24
gnu: r-ttr: Update to 0.24.3. 
* gnu/packages/cran.scm (r-ttr): Update to 0.24.3.
 2022-01-05 21:18:01 +01:00
Ricardo Wurmus
2caa553d19
gnu: r-tinytex: Update to 0.36. 
* gnu/packages/cran.scm (r-tinytex): Update to 0.36.
 2022-01-05 21:18:01 +01:00
Ricardo Wurmus
566ad34e97
gnu: r-xfun: Update to 0.29. 
* gnu/packages/cran.scm (r-xfun): Update to 0.29.
 2022-01-05 21:18:01 +01:00
Ricardo Wurmus
53004bd0ee
gnu: r-venndiagram: Update to 1.7.1. 
* gnu/packages/cran.scm (r-venndiagram): Update to 1.7.1.
 2022-01-05 21:18:01 +01:00
Ricardo Wurmus
64953f106d
gnu: r-hardyweinberg: Update to 1.7.4. 
* gnu/packages/cran.scm (r-hardyweinberg): Update to 1.7.4.
[propagated-inputs]: Add r-nnet.
 2022-01-05 21:18:01 +01:00
Ricardo Wurmus
eafc0d0ecc
gnu: r-mice: Update to 3.14.0. 
* gnu/packages/cran.scm (r-mice): Update to 3.14.0.
[propagated-inputs]: Add r-withr.
 2022-01-05 21:18:01 +01:00
Ricardo Wurmus
2a1582d231
gnu: r-broom: Update to 0.7.11. 
* gnu/packages/cran.scm (r-broom): Update to 0.7.11.
 2022-01-05 21:18:00 +01:00
Ricardo Wurmus
5248478c10
gnu: r-rmysql: Update to 0.10.23. 
* gnu/packages/cran.scm (r-rmysql): Update to 0.10.23.
 2022-01-05 21:18:00 +01:00
Ricardo Wurmus
60f0c3b46e
gnu: r-dimred: Update to 0.2.4. 
* gnu/packages/cran.scm (r-dimred): Update to 0.2.4.
[native-inputs]: Add r-knitr.
 2022-01-05 21:18:00 +01:00
Ricardo Wurmus
5ff9cbf368
gnu: r-progressr: Update to 0.10.0. 
* gnu/packages/cran.scm (r-progressr): Update to 0.10.0.
 2022-01-05 21:18:00 +01:00
Ricardo Wurmus
23d84dd96c
gnu: r-suppdists: Update to 1.1-9.7. 
* gnu/packages/cran.scm (r-suppdists): Update to 1.1-9.7.
 2022-01-05 21:18:00 +01:00
Ricardo Wurmus
a01709b10e
gnu: r-pkgload: Update to 1.2.4. 
* gnu/packages/cran.scm (r-pkgload): Update to 1.2.4.
 2022-01-05 21:18:00 +01:00
Ricardo Wurmus
d6a544a0e6
gnu: r-pkgbuild: Update to 1.3.1. 
* gnu/packages/cran.scm (r-pkgbuild): Update to 1.3.1.
 2022-01-05 21:18:00 +01:00
Ricardo Wurmus
64b9ce4b92
gnu: r-glue: Update to 1.6.0. 
* gnu/packages/cran.scm (r-glue): Update to 1.6.0.
 2022-01-05 21:18:00 +01:00
Ricardo Wurmus
8bfc37f725
gnu: r-ape: Update to 5.6. 
* gnu/packages/cran.scm (r-ape): Update to 5.6.
 2022-01-05 21:18:00 +01:00
Ricardo Wurmus
2f3eac29af
gnu: r-shadowtext: Update to 0.1.0. 
* gnu/packages/cran.scm (r-shadowtext): Update to 0.1.0.
 2022-01-05 21:18:00 +01:00
Ricardo Wurmus
138ce13e44
gnu: r-ggpmisc: Update to 0.4.5. 
* gnu/packages/cran.scm (r-ggpmisc): Update to 0.4.5.
 2022-01-05 21:17:59 +01:00
Ricardo Wurmus
52a839ac52
gnu: r-ggpp: Update to 0.4.3. 
* gnu/packages/cran.scm (r-ggpp): Update to 0.4.3.
 2022-01-05 21:17:59 +01:00
Ricardo Wurmus
8e538e080c
gnu: r-v8: Update to 4.0.0. 
* gnu/packages/cran.scm (r-v8): Update to 4.0.0.
 2022-01-05 21:17:59 +01:00
Ricardo Wurmus
0d1e96cec3
gnu: r-rticles: Update to 0.22. 
* gnu/packages/cran.scm (r-rticles): Update to 0.22.
 2022-01-05 21:17:59 +01:00
Ricardo Wurmus
0e6fee9bc0
gnu: r-datawizard: Update to 0.2.2. 
* gnu/packages/cran.scm (r-datawizard): Update to 0.2.2.
 2022-01-05 21:17:59 +01:00
Ricardo Wurmus
9af1a9dd4a
gnu: r-brio: Update to 1.1.3. 
* gnu/packages/cran.scm (r-brio): Update to 1.1.3.
 2022-01-05 21:17:59 +01:00
Ricardo Wurmus
38e4477a8b
gnu: r-httpuv: Update to 1.6.4. 
* gnu/packages/cran.scm (r-httpuv): Update to 1.6.4.
* gnu/packages/patches/r-httpuv-1.5.5-unvendor-libuv.patch: Adjust to version
1.6.4.
 2022-01-05 21:17:59 +01:00
Ricardo Wurmus
3cb1548f91
gnu: Add r-densestbayes. 
* gnu/packages/cran.scm (r-densestbayes): New variable.
 2022-01-05 21:17:59 +01:00
Ricardo Wurmus
9a89cee1b1
gnu: Add r-matrixextra. 
* gnu/packages/cran.scm (r-matrixextra): New variable.
 2022-01-05 21:17:58 +01:00
Ricardo Wurmus
231e33d636
gnu: r-activedriverwgs: Update to 1.0.3. 
* gnu/packages/bioconductor.scm (r-activedriverwgs): Update to 1.0.3.
 2022-01-05 21:17:58 +01:00
Ricardo Wurmus
b615af830b
gnu: r-activedriverwgs: Update to 1.1.2. 
* gnu/packages/bioconductor.scm (r-activedriverwgs): Update to 1.1.2.
[propagated-inputs]: Add r-bsgenome-hsapiens-ucsc-hg38,
r-bsgenome-mmusculus-ucsc-mm9, and r-bsgenome-mmusculus-ucsc-mm10.
 2022-01-05 21:17:58 +01:00
Ricardo Wurmus
734e1b185f
gnu: r-valr: Update to 0.6.4. 
* gnu/packages/cran.scm (r-valr): Move from here...
* gnu/packages/bioconductor.scm (r-valr): ...to here.  Update to 0.6.4.
[propagated-inputs]: Add r-rtracklayer.
 2022-01-05 21:17:58 +01:00
Ricardo Wurmus
d4e0534c4f
gnu: r-openssl: Use openssl instead of libressl. 
* gnu/packages/statistics.scm (r-openssl)[arguments]: Add phase to disable
versioned linking.
[inputs]: Replace libressl with openssl.
 2022-01-05 21:17:58 +01:00
Ricardo Wurmus
2d666bd6c0
gnu: r-openssl: Update to 1.4.6. 
* gnu/packages/statistics.scm (r-openssl): Update to 1.4.6.
 2022-01-05 21:17:58 +01:00
Ricardo Wurmus
e86afe58ff
guix/upstream: Let changed-inputs support the new input lists. 
* guix/upstream.scm (changed-inputs): Add match clauses for new-style input
lists.
 2022-01-05 21:17:58 +01:00
Ricardo Wurmus
6226df77ee
tests: Add failing tests for changed-inputs on new style inputs. 
* tests/upstream.scm ("changed-inputs returns changes to plain input list",
"changed-inputs returns changes to all plain input lists"): New tests.
 2022-01-05 21:17:58 +01:00
Ricardo Wurmus
a6bf1c108e
tests: Add tests for changed-inputs on old-style inputs. 
All these tests pass, because they only test the old-style input alists with
labels.

* tests/upstream.scm ("changed-inputs returns no changes",
"changed-inputs returns changes to labelled input list",
"changed-inputs returns changes to all labelled input lists"): New tests.
 2022-01-05 21:17:54 +01:00
Nicolas Goaziou
6a54715988
gnu: musescore: Use new package style. 
* gnu/packages/music.scm (musescore)[source]<snippet>: Remove trailing #T.
[inputs]: Remove labels.
 2022-01-05 14:32:12 +01:00
Nicolas Goaziou
7e651ab3e6
gnu: emacs-helm-cider: Update to 0.5.0. 
* gnu/packages/emacs-xyz.scm (emacs-helm-cider): Update to 0.5.0.
 2022-01-05 12:11:30 +01:00
Nicolas Goaziou
16a645b7a9
gnu: emacs-emms: Update to 8. 
* gnu/packages/emacs-xyz.scm (emacs-emms): Update to 8.
 2022-01-05 12:08:07 +01:00
Marius Bakke
9577a9bad9
gnu: python-django@2.2: Update hash. 
PyPI is serving a different tarball from the official home page, where this
packager had downloaded it: <https://code.djangoproject.com/ticket/33411>.
This is a follow-up to commit ad35d8c017.

* gnu/packages/django.scm (python-django-2.2)[source]: Update checksum.
 2022-01-05 11:43:20 +01:00
Marius Bakke
ad35d8c017
gnu: python-django@2.2: Update to 2.2.26 [security fixes]. 
This release fixes CVE-2021-45115, CVE-2021-45116, and CVE-2021-45452.

* gnu/packages/django.scm (python-django-2.2): Update to 2.2.26.
 2022-01-05 11:20:00 +01:00
Marius Bakke
e19b9ad5a2
gnu: python-django@3.2: Update to 3.2.11 [security fixes]. 
This release fixes CVE-2021-45115, CVE-2021-45116, and CVE-2021-45452.

* gnu/packages/django.scm (python-django-3.2): Update to 3.2.11.
 2022-01-05 11:20:00 +01:00
Marius Bakke
07b505aa3b
gnu: python-django: Update to 4.0.1 [security fixes]. 
This release fixes CVE-2021-45115, CVE-2021-45116, and CVE-2021-45452.

* gnu/packages/django.scm (python-django-4.0): Update to 4.0.1.
 2022-01-05 11:20:00 +01:00
Marius Bakke
1b6973cc58
gnu: uBlock Origin: Update to 1.40.4. 
* gnu/packages/browser-extensions.scm (ublock-origin): Update to 1.40.4.
 2022-01-05 11:20:00 +01:00
Marius Bakke
56b29a61e8
gnu: nmrpflash: Update to 0.9.16. 
* gnu/packages/admin.scm (nmrpflash): Update to 0.9.16.
 2022-01-05 11:20:00 +01:00
Tobias Geerinckx-Rice
8860e9db56
gnu: lucene++: Use G-expressions. 
* gnu/packages/rdf.scm (lucene++)[arguments]:
Rewrite as G-expressions.
 2022-01-05 03:54:05 +01:00
Tobias Geerinckx-Rice
8e25b0f64a
gnu: lucene++: Update to 3.0.8. 
* gnu/packages/rdf.scm (lucene++): Update to 3.0.8.
[source]: Add a nice snippet.
[arguments]: Don't install the entire gtest suite.
Add a custom 'check phase.
[inputs]: Add zlib.
 2022-01-05 03:54:05 +01:00