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Author SHA1 Message Date
Ludovic Courtès
c062b1eb6c
pull: Set '%nix-instantiate' to a sensible value. 
Reported by ng0 <ng0@libertad.pw>.
Fixes <http://bugs.gnu.org/25053>.

* guix/build/pull.scm (build-guix): Replace "@NIX_INSTANTIATE@" in
guix/config.scm with "nix-instantiate".
 2016-11-28 22:58:18 +01:00
Ludovic Courtès
9a5187b687
doc: Document NSS incompatibility issues on foreign distros. 
* doc/guix.texi (Application Setup)[Name Service Switch]: New
subsection.
 2016-11-28 22:58:18 +01:00
Ricardo Wurmus
bd3be46e7f
gnu: Add r-gkmsvm. 
* gnu/packages/bioinformatics.scm (r-gkmsvm): New variable.
 2016-11-28 22:43:18 +01:00
Ricardo Wurmus
419a8a186f
gnu: Add r-rocr. 
* gnu/packages/statistics.scm (r-rocr): New variable.
 2016-11-28 22:43:18 +01:00
Ricardo Wurmus
0cfe0570f2
gnu: Add r-gplots. 
* gnu/packages/statistics.scm (r-gplots): New variable.
 2016-11-28 22:43:18 +01:00
Ricardo Wurmus
6034cd905e
gnu: Add r-gdata. 
* gnu/packages/statistics.scm (r-gdata): New variable.
 2016-11-28 22:43:18 +01:00
Ricardo Wurmus
2d9fb1702f
gnu: Add r-seqgl. 
* gnu/packages/bioinformatics.scm (r-seqgl): New variable.
 2016-11-28 22:43:17 +01:00
Ricardo Wurmus
c827f20286
gnu: Add r-chipkernels. 
* gnu/packages/bioinformatics.scm (r-chipkernels): New variable.
 2016-11-28 22:43:17 +01:00
Ricardo Wurmus
1571f90e35
gnu: Add r-gtools. 
* gnu/packages/statistics.scm (r-gtools): New variable.
 2016-11-28 22:43:17 +01:00
Ricardo Wurmus
f05c7eb48d
gnu: Add r-kernlab. 
* gnu/packages/machine-learning.scm (r-kernlab): New variable.
 2016-11-28 22:43:17 +01:00
Ricardo Wurmus
6335bf1c80
gnu: Add r-sfsmisc. 
* gnu/packages/statistics.scm (r-sfsmisc): New variable.
 2016-11-28 22:43:17 +01:00
Ricardo Wurmus
d71605294f
gnu: Add r-wgcna. 
* gnu/packages/bioinformatics.scm (r-wgcna): New variable.
 2016-11-28 22:43:17 +01:00
Ricardo Wurmus
1bd46f5520
gnu: Add r-fastcluster. 
* gnu/packages/statistics.scm (r-fastcluster): New variable.
 2016-11-28 22:43:16 +01:00
Ricardo Wurmus
c4708783ee
gnu: Add r-preprocesscore. 
* gnu/packages/statistics.scm (r-preprocesscore): New variable.
 2016-11-28 22:43:16 +01:00
Ricardo Wurmus
c9a6671490
gnu: Add r-dynamictreecut. 
* gnu/packages/statistics.scm (r-dynamictreecut): New variable.
 2016-11-28 22:43:16 +01:00
Ricardo Wurmus
e619a5c245
gnu: Add r-r4rna. 
* gnu/packages/bioinformatics.scm (r-r4rna): New variable.
 2016-11-28 22:43:16 +01:00
Ricardo Wurmus
e7d16ad161
gnu: Add r-spams. 
* gnu/packages/statistics.scm (r-spams): New variable.
 2016-11-28 22:43:16 +01:00
Ricardo Wurmus
9f5435d963
gnu: Add r-googlesheets. 
* gnu/packages/statistics.scm (r-googlesheets): New variable.
 2016-11-28 22:43:16 +01:00
Ricardo Wurmus
d427e03eee
gnu: Add r-cellranger. 
* gnu/packages/statistics.scm (r-cellranger): New variable.
 2016-11-28 22:43:15 +01:00
Ricardo Wurmus
58612fd2c8
gnu: Add r-rematch. 
* gnu/packages/statistics.scm (r-rematch): New variable.
 2016-11-28 22:43:15 +01:00
Ricardo Wurmus
e48ddb9628
doc: Suggest installing gvfs. 
* gnu/system/examples/desktop.tmpl: Add gvfs to the system-wide list of
packages.
 2016-11-28 22:09:38 +01:00
Ricardo Wurmus
eb21d24806
gnu: lv2: Update to 1.14.0. 
* gnu/packages/audio.scm (lv2): Update to 1.14.0.
 2016-11-28 22:08:37 +01:00
Ricardo Wurmus
1bbe79594e
gnu: non-sequencer: Update to 1.9.5-2.a22f33f. 
* gnu/packages/music.scm (non-sequencer): Update to 1.9.5-2.a22f33f.
 2016-11-28 22:07:20 +01:00
Efraim Flashner
5e9cce55b5
gnu: ntp: Update to 4.2.8p9. 
* gnu/packages/ntp.scm (ntp): Update to 4.2.8p9.
 2016-11-28 21:56:30 +02:00
Efraim Flashner
d35de59b64
gnu: ntp: Fix indentation. 
* gnu/packages/ntp.scm (ntp): Fix indentation to only use spaces.
 2016-11-28 20:53:14 +02:00
John Darrington
f0ddc5e55b
gnu: Add editres. 
* gnu/packages/xorg.scm (editres): New variable.
 2016-11-28 18:22:15 +01:00
Ben Woodcroft
9926875572
gnu: Add newick-utils. 
* gnu/packages/bioinformatics.scm (newick-utils): New variable.
 2016-11-28 09:00:41 +10:00
Ludovic Courtès
aa28ecc40a
pull: Hack to allow compilation with older Guile-SSH packages. 
Reported by iyzsong@member.fsf.org (宋文武)
at <https://lists.gnu.org/archive/html/guix-devel/2016-11/msg01045.html>.

* build-aux/build-self.scm (build): Set 'LTDL_LIBRARY_PATH' when
GUILE-SSH has a "0.9." version prefix.
 2016-11-27 23:06:09 +01:00
Efraim Flashner
c7a70c336f
gnu: jasper: Update to 2.0.0 [fixes security issues]. 
* gnu/packages/image.scm (jasper): Update to 2.0.0.
[build-system]: Switch to cmake-build-system.
 2016-11-27 22:19:55 +02:00
Tobias Geerinckx-Rice
f6c44a3f04
gnu: gphoto2: Update to 2.5.11. 
* gnu/packages/photo.scm (gphoto2): Update to 2.5.11.
 2016-11-27 20:58:18 +01:00
Tobias Geerinckx-Rice
69874f5fd2
gnu: libgphoto2: Update to 2.5.11. 
* gnu/packages/photo.scm (libgphoto2): Update to 2.5.11.
 2016-11-27 20:58:18 +01:00
Leo Famulari
f27ec24d88
gnu: beets: Update to 1.4.1. 
* gnu/packages/music.scm (beets): Update to 1.4.1.
[inputs]: Add python2-discogs-client.
 2016-11-27 14:49:36 -05:00
Leo Famulari
d3db5efbf9
gnu: Add python-discogs-client. 
* gnu/packages/music.scm (python-discogs-client,
python2-discogs-client): New variables.
 2016-11-27 14:49:36 -05:00
Leo Famulari
6782444764
gnu: python-rarfile: Update to 2.8. 
* gnu/packages/python.scm (python-rarfile, python2-rarfile): Update to 2.8.
[source]: Remove obsolete patch.
* gnu/packages/patches/python-rarfile-fix-tests.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2016-11-27 14:49:35 -05:00
Leo Famulari
8c4964dd51
gnu: python-jellyfish: Update to 0.5.6. 
* gnu/packages/python.scm (python-jellyfish, python2-jellyfish): Update to
0.5.6.
 2016-11-27 14:49:35 -05:00
Leo Famulari
b04d9b97c4
gnu: python-pylast: Update 1.6.0. 
* gnu/packages/music.scm (python-pylast, python2-pylast): Update to 1.6.0.
 2016-11-27 14:49:35 -05:00
Leo Famulari
daedf34db9
gnu: python-musicbrainzngs: Update to 0.6. 
* gnu/packages/music.scm (python-musicbrainzngs, python2-musicbrainzngs): Update
to 0.6.
[arguments]: Disable the test suites.
 2016-11-27 14:49:35 -05:00
Leo Famulari
38e81a2c55
gnu: python-munkres: Update to 1.0.8. 
* gnu/packages/python.scm (python-munkres, python2-munkres): Update to 1.0.8.
 2016-11-27 14:49:34 -05:00
Leo Famulari
4228a79e6f
gnu: python-mutagen: Update to 1.35.1. 
* gnu/packages/music.scm (python-mutagen, python2-mutagen): Update to 1.35.1.
[native-inputs]: Add python-pytest.
 2016-11-27 14:49:30 -05:00
Ricardo Wurmus
1bf5a7e920
gnu: gcj: Inherit source field from "gcc". 
* gnu/packages/gcc.scm (gcj)[source]: Inherit source from "gcc" package.
 2016-11-27 19:00:57 +01:00
Ricardo Wurmus
bac6409970
gnu: gcj: Correct paths in ARM patch. 
* gnu/packages/patches/gcj-arm-mode.patch: Strip directories.
 2016-11-27 18:59:54 +01:00
Marius Bakke
8c4140e49e
gnu: notmuch: Update to 0.23.3. 
* gnu/packages/mail.scm (notmuch): Update to 0.23.3.
[arguments]: Re-enable previously failing tests.
 2016-11-27 18:29:44 +01:00
Leo Famulari
cd569f0d29
gnu: gcj: Fix typo in patch filename. 
This is a followup to commit dbf8f84f15.

Reported by quigonjinn on #guix.

* gnu/packages/gcc.scm (gcj)[source]: Fix typo.
 2016-11-27 10:57:33 -05:00
Danny Milosavljevic
7574cecf0f
gnu: python2-flask: Pick up python-flask's native-inputs. 
* gnu/packages/python.scm (python2-flask)[native-inputs]:
  Pick up python-flask's native-inputs.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2016-11-27 13:23:53 +01:00
Marius Bakke
988e1dca4b
gnu: udisks: Update to 2.1.8. 
* gnu/packages/freedesktop.scm (udisks): Update to 2.1.8.
[home-page]: Use HTTPS.
 2016-11-27 11:13:50 +01:00
Maxim Cournoyer
aef5055ff9
gnu: udisks: Add manpages. 
* gnu/packages/freedesktop.scm (udisks)[native-inputs]: Add docbook-xml
and docbook-xsl.
[arguments]: Add #:make-flags to specify XML catalog files for manuals.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2016-11-27 11:10:31 +01:00
Ricardo Wurmus
dbf8f84f15
gnu: gcj: Fix build on armhf. 
* gnu/packages/patches/gcj-arm-mode.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add patch.
* gnu/packages/gcc.scm (gcj): Add patch.
[arguments]: Delete failing tests.
 2016-11-27 10:04:57 +01:00
Ricardo Wurmus
253cdd6c14
gnu: Add biber-2.5. 
* gnu/packages/tex.scm (biber-2.5): New variable.
 2016-11-27 09:48:43 +01:00
Ricardo Wurmus
d400068085
gnu: Add biber. 
* gnu/packages/tex.scm (biber): New variable.
 2016-11-27 09:48:43 +01:00
Ricardo Wurmus
ebcf74daf8
gnu: Add perl-text-bibtex. 
* gnu/packages/tex.scm (perl-text-bibtex): New variable.
 2016-11-27 09:48:43 +01:00