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Author SHA1 Message Date
Ludovic Courtès
18fa433bf5
gnu: gcc-mesboot: Remove redundant input. 
Fixes <https://bugs.gnu.org/43508>.

* gnu/packages/commencement.scm (gcc-mesboot)[native-inputs]: Remove
GCC-MESBOOT1, which is already in %BOOT-MESBOOT4-INPUTS.
 2020-09-19 17:28:47 +02:00
Ludovic Courtès
d845e3af7c
utils: Add 'call-with-temporary-output-file'. 
* guix/utils.scm: Re-export 'call-with-temporary-output-file'.
(call-with-temporary-output-file): Move to...
* guix/build/utils.scm (call-with-temporary-output-file): ... here.
 2020-09-19 17:28:47 +02:00
Ludovic Courtès
a08cb3ca95
Remove (guix build rpath). 
This file was unused and is now superseded by (guix build gremlin).

* guix/build/rpath.scm: Remove.
* Makefile.am (MODULES): Remove it.
 2020-09-19 17:28:46 +02:00
Ludovic Courtès
49a1203d67
gremlin: Add 'set-file-runpath', 'file-runpath', and 'file-needed'. 
* guix/build/gremlin.scm (file-dynamic-info, file-runpath, file-needed):
New procedures.
(&missing-runpath-error, &runpath-too-long-error): New condition types.
(set-file-runpath): New procedure.
* tests/gremlin.scm ("set-file-runpath + file-runpath"): New test.
 2020-09-19 17:28:46 +02:00
Jakub Kądziołka
e0f31baacc
build-system/gnu: strip with --strip-unneeded [v2] 
[Accidentally pushed patch v1, this commit contains the rest of the
changes. Revised commit message follows.]

Apart from debug information, one can also strip some symbols. This can
be a significant difference, the closure of gcc-toolchain@7 got reduced
by 15 MB in my tests.

As per [1], --strip-debug is included in --strip-unneeded, and
the debug files created also contain a copy of the information removed
by --strip-unneeded.

Linux From Scratch suggests that this option shouldn't be used on static
libraries [2], however other sources [3] indicate otherwise. Building a
toolchain with this patch succeeds, and the result works fine for
'gcc -static hello-world.c'.

[1]: https://stackoverflow.com/a/52555093
[2]: http://www.linuxfromscratch.org/lfs/view/9.1/chapter05/stripping.html
[3]: https://www.technovelty.org/linux/stripping-shared-libraries.html

* guix/build/gnu-build-system.scm (strip): Use --strip-unneeded.
* guix/build-system/gnu.scm (static-package, gnu-build, gnu-cross-build): Likewise.
 2020-09-19 15:43:03 +02:00
Jakub Kądziołka
f32a6055a5
build-system/gnu: strip with --strip-unneeded 
Apart from debug information, one can also strip some symbols. This can
be a significant difference, qtbase:out consists of about 5 MB of those
symbols. As per [1], --strip-debug is included in --strip-unneeded, and
the debug files created also contain a copy of the information removed
by --strip-unneeded.

Linux From Scratch suggests that this option shouldn't be used on static
libraries [2], however other sources [3] indicate otherwise. Building a
toolchain with this patch succeeds, and the result works fine for
'gcc -static hello-world.c'.

[1]: https://stackoverflow.com/a/52555093
[2]: http://www.linuxfromscratch.org/lfs/view/9.1/chapter05/stripping.html
[3]: https://www.technovelty.org/linux/stripping-shared-libraries.html

* guix/build/gnu-build-system.scm (strip): Use --strip-unneeded.
 2020-09-19 15:37:07 +02:00
Greg Hogan
d7f776888b
gnu: boost: Update to 1.74.0. 
* gnu/packages/boost.scm (boost): Update to 1.74.0.
[source]: Remove patches and defunct substitute.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2020-09-18 22:26:33 +02:00
Greg Hogan
66e3812e2f
gnu: llvm: Update to 10.0.1. 
* gnu/packages/llvm.scm (llvm, clang, clang-runtime,
clang-toolchain, lld): Update to 10.0.1.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2020-09-18 22:26:33 +02:00
Greg Hogan
e364758d44
gnu: openblas: Update to 0.3.10. 
* gnu/packages/maths.scm (openblas): Update to 0.3.10.
[source]: Fetch from github.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
 2020-09-18 22:26:33 +02:00
Greg Hogan
8944f1a4a4
gnu: Python 3: Update to 3.8.5. 
* gnu/packages/python.scm (python-3.8): Update to 3.8.5.

Signed-off-by: Leo Famulari <leo@famulari.name>
 2020-09-18 14:41:48 -04:00
Tobias Geerinckx-Rice
e943343912
gnu: cups-filters: Wrap with grep. 
* gnu/packages/cups.scm (cups-filters)[inputs]: Add grep.
[arguments]: Wrap all filters with it in $PATH.
 2020-09-18 18:57:59 +02:00
Vagrant Cascadian
7467f9857d
gnu: commencement: bash-mesboot0: Remove store file name. 
This is a follow-up to commit d9484fba91, and
fixes "make dist".

* gnu/packages/commencement (bash-mesboot0): Remove reference to store item.
 2020-09-16 23:30:01 +02:00
Maxim Cournoyer
fa8fe90edb
Merge remote-tracking branch 'origin/master' into core-updates 2020-09-14 16:17:19 -04:00
Ricardo Wurmus
d60739dff2
gnu: r-quantreg: Update to 5.67. 
* gnu/packages/statistics.scm (r-quantreg): Update to 5.67.
 2020-09-14 19:07:47 +02:00
Ricardo Wurmus
2feb943558
gnu: r-cowplot: Update to 1.1.0. 
* gnu/packages/statistics.scm (r-cowplot): Update to 1.1.0.
[native-inputs]: Add r-knitr.
 2020-09-14 19:07:47 +02:00
Ricardo Wurmus
90ff99d9c5
gnu: r-rcpparmadillo: Update to 0.9.900.3.0. 
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.9.900.3.0.
 2020-09-14 19:07:47 +02:00
Ricardo Wurmus
995641369e
gnu: r-ggdendro: Update to 0.1.22. 
* gnu/packages/statistics.scm (r-ggdendro): Update to 0.1.22.
 2020-09-14 19:07:47 +02:00
Ricardo Wurmus
7e2aa0efba
gnu: r-stringi: Update to 1.5.3. 
* gnu/packages/statistics.scm (r-stringi): Update to 1.5.3.
 2020-09-14 19:07:47 +02:00
Ricardo Wurmus
98f76dbcfb
gnu: r-mass: Update to 7.3-53. 
* gnu/packages/statistics.scm (r-mass): Update to 7.3-53.
 2020-09-14 19:07:47 +02:00
Ricardo Wurmus
1c1b941902
gnu: r-diversitree: Update to 0.9-14. 
* gnu/packages/cran.scm (r-diversitree): Update to 0.9-14.
 2020-09-14 19:07:47 +02:00
Ricardo Wurmus
8731d274ae
gnu: r-seurat: Update to 3.2.1. 
* gnu/packages/cran.scm (r-seurat): Update to 3.2.1.
[propagated-inputs]: Remove r-ape; add r-matrixstats.
 2020-09-14 19:07:47 +02:00
Ricardo Wurmus
e6711231ed
gnu: r-rfast: Update to 2.0.1. 
* gnu/packages/cran.scm (r-rfast): Update to 2.0.1.
 2020-09-14 19:07:47 +02:00
Ricardo Wurmus
0982ffa898
gnu: r-scatterpie: Update to 0.1.5. 
* gnu/packages/cran.scm (r-scatterpie): Update to 0.1.5.
 2020-09-14 19:07:47 +02:00
Ricardo Wurmus
df2210be8b
gnu: r-forecast: Update to 8.13. 
* gnu/packages/cran.scm (r-forecast): Update to 8.13.
 2020-09-14 19:07:47 +02:00
Ricardo Wurmus
ad10a45225
gnu: r-gamlss: Update to 5.2-0. 
* gnu/packages/cran.scm (r-gamlss): Update to 5.2-0.
 2020-09-14 19:07:47 +02:00
Ricardo Wurmus
bf37420fe7
gnu: r-parameters: Update to 0.8.5. 
* gnu/packages/cran.scm (r-parameters): Update to 0.8.5.
 2020-09-14 19:07:47 +02:00
Ricardo Wurmus
515b746945
gnu: r-systemfonts: Update to 0.3.1. 
* gnu/packages/cran.scm (r-systemfonts): Update to 0.3.1.
 2020-09-14 19:07:46 +02:00
Ricardo Wurmus
3f67fb11cf
gnu: r-dalex: Update to 2.0. 
* gnu/packages/cran.scm (r-dalex): Update to 2.0.
 2020-09-14 19:07:46 +02:00
Ricardo Wurmus
ef59d57841
gnu: r-sf: Update to 0.9-6. 
* gnu/packages/cran.scm (r-sf): Update to 0.9-6.
 2020-09-14 19:07:46 +02:00
Ricardo Wurmus
b426f79602
gnu: r-deldir: Update to 0.1-29. 
* gnu/packages/cran.scm (r-deldir): Update to 0.1-29.
 2020-09-14 19:07:46 +02:00
Ricardo Wurmus
0435f7eec1
gnu: r-shinyjs: Update to 2.0.0. 
* gnu/packages/cran.scm (r-shinyjs): Update to 2.0.0.
[native-inputs]: Add r-knitr.
 2020-09-14 19:07:46 +02:00
Ricardo Wurmus
11f448ba74
gnu: r-etm: Update to 1.1.1. 
* gnu/packages/cran.scm (r-etm): Update to 1.1.1.
 2020-09-14 19:07:46 +02:00
Ricardo Wurmus
ffe714b5f4
gnu: r-fields: Update to 11.4. 
* gnu/packages/cran.scm (r-fields): Update to 11.4.
 2020-09-14 19:07:46 +02:00
Ricardo Wurmus
0f93324a83
gnu: r-rnifti: Update to 1.2.2. 
* gnu/packages/cran.scm (r-rnifti): Update to 1.2.2.
 2020-09-14 19:07:46 +02:00
Ricardo Wurmus
0b73771ad9
gnu: r-misc3d: Update to 0.9-0. 
* gnu/packages/cran.scm (r-misc3d): Update to 0.9-0.
 2020-09-14 19:07:46 +02:00
Ricardo Wurmus
015e15c836
gnu: r-rcpphnsw: Update to 0.3.0. 
* gnu/packages/cran.scm (r-rcpphnsw): Update to 0.3.0.
 2020-09-14 19:07:46 +02:00
Ricardo Wurmus
a1e92714ce
gnu: r-ggeffects: Update to 0.16.0. 
* gnu/packages/cran.scm (r-ggeffects): Update to 0.16.0.
 2020-09-14 19:07:46 +02:00
Ricardo Wurmus
7975d2c3b8
gnu: r-performance: Update to 0.5.0. 
* gnu/packages/cran.scm (r-performance): Update to 0.5.0.
 2020-09-14 19:07:46 +02:00
Ricardo Wurmus
5efeef3f01
gnu: r-mosaicdata: Update to 0.20.1. 
* gnu/packages/cran.scm (r-mosaicdata): Update to 0.20.1.
 2020-09-14 19:07:46 +02:00
Ricardo Wurmus
9e3712958f
gnu: r-mosaiccore: Update to 0.8.0. 
* gnu/packages/cran.scm (r-mosaiccore): Update to 0.8.0.
[propagated-inputs]: Remove r-lazyeval.
 2020-09-14 19:07:46 +02:00
Ricardo Wurmus
6880269b94
gnu: r-flextable: Update to 0.5.11. 
* gnu/packages/cran.scm (r-flextable): Update to 0.5.11.
 2020-09-14 19:07:45 +02:00
Ricardo Wurmus
07c1620f81
gnu: r-insight: Update to 0.9.5. 
* gnu/packages/cran.scm (r-insight): Update to 0.9.5.
 2020-09-14 19:07:45 +02:00
Ricardo Wurmus
9a22da3790
gnu: r-officer: Update to 0.3.14. 
* gnu/packages/cran.scm (r-officer): Update to 0.3.14.
 2020-09-14 19:07:45 +02:00
Ricardo Wurmus
16cc10eafb
gnu: r-extradistr: Update to 1.9.1. 
* gnu/packages/cran.scm (r-extradistr): Update to 1.9.1.
 2020-09-14 19:07:45 +02:00
Ricardo Wurmus
8d8db33f71
gnu: r-tsa: Update to 1.3. 
* gnu/packages/cran.scm (r-tsa): Update to 1.3.
[propagated-inputs]: Add r-tseries.
 2020-09-14 19:07:45 +02:00
Ricardo Wurmus
60e4d97295
gnu: r-xfun: Update to 0.17. 
* gnu/packages/cran.scm (r-xfun): Update to 0.17.
 2020-09-14 19:07:45 +02:00
Ricardo Wurmus
cb4243eaba
gnu: r-processx: Update to 3.4.4. 
* gnu/packages/cran.scm (r-processx): Update to 3.4.4.
 2020-09-14 19:07:45 +02:00
Ricardo Wurmus
302dacec7e
gnu: r-xts: Update to 0.12.1. 
* gnu/packages/cran.scm (r-xts): Update to 0.12.1.
 2020-09-14 19:07:45 +02:00
Ricardo Wurmus
dee6078a86
gnu: r-psych: Update to 2.0.8. 
* gnu/packages/cran.scm (r-psych): Update to 2.0.8.
 2020-09-14 19:07:45 +02:00
Ricardo Wurmus
c5199f2918
gnu: r-inline: Update to 0.3.16. 
* gnu/packages/cran.scm (r-inline): Update to 0.3.16.
 2020-09-14 19:07:45 +02:00