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Author SHA1 Message Date
Ludovic Courtès
1ad52e2eeb
import: pypi: Adjust tests for new build system. 
This is a followup to cb8d080349.

* tests/pypi.scm ("pypi->guix-package, no wheel")
("pypi->guix-package, wheels")
("pypi->guix-package, no usable requirement file.")
("pypi->guix-package, package name contains \"-\" followed by digits"):
Replace 'python-build-system' by 'pyproject-build-system'.
 2023-04-30 22:30:49 +02:00
Ricardo Wurmus
a27e0d4533
gnu: r-ggbeeswarm: Update to 0.7.2. 
* gnu/packages/statistics.scm (r-ggbeeswarm): Update to 0.7.2.
[propagated-inputs]: Add r-cli.
 2023-04-30 22:25:32 +02:00
Ricardo Wurmus
86f5c3114b
gnu: r-clusterr: Update to 1.3.1. 
* gnu/packages/cran.scm (r-clusterr): Update to 1.3.1.
 2023-04-30 22:25:32 +02:00
Leo Famulari
e132e48a32
gnu: linux-libre 6.1: Update to 6.1.26. 
* gnu/packages/linux.scm (linux-libre-6.1-version): Update to 6.1.26.
(linux-libre-6.1-pristine-source): Update hash.
 2023-04-30 15:09:41 -04:00
Leo Famulari
0d62485f0a
gnu: linux-libre 4.14: Update to 4.14.314. 
* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.314.
(linux-libre-4.14-pristine-source): Update hash.
 2023-04-30 15:09:41 -04:00
Leo Famulari
c3f0f66a77
gnu: linux-libre 4.19: Update to 4.19.282. 
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.282.
(linux-libre-4.19-pristine-source): Update hash.
 2023-04-30 15:09:40 -04:00
Leo Famulari
8de739e452
gnu: linux-libre 5.4: Update to 5.4.242. 
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.242.
(linux-libre-5.4-pristine-source): Update hash.
 2023-04-30 15:09:40 -04:00
Leo Famulari
4e73ff4fcc
gnu: linux-libre 5.10: Update to 5.10.179. 
* gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.179.
(linux-libre-5.10-pristine-source): Update hash.
 2023-04-30 15:09:40 -04:00
Leo Famulari
1d892736cd
gnu: linux-libre 5.15: Update to 5.15.109. 
* gnu/packages/linux.scm (linux-libre-5.15-version): Update to 5.15.109.
(linux-libre-5.15-pristine-source): Update hash.
 2023-04-30 15:09:40 -04:00
Leo Famulari
a3abbc02b4
gnu: linux-libre: Update to 6.2.13. 
* gnu/packages/linux.scm (linux-libre-6.2-version): Update to 6.2.13.
(linux-libre-6.2-pristine-source): Update hash.
 2023-04-30 15:09:40 -04:00
Marius Bakke
a34348967e
gnu: clitest: Fix test failure with newer grep. 
* gnu/packages/patches/clitest-grep-compat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/check.scm (clitest)[source](patches): New field.
[arguments]: While at it, remove obsolete substitution.
 2023-04-30 23:25:46 +08:00
Marius Bakke
f9a60f3467
gnu: ungoogled-chromium: Update to 112.0.5615.165-1. 
* gnu/packages/chromium.scm (%chromium-version): Set to 112.0.5615.165.
(%ungoogled-origin, ungoogled-chromium): Update hashes.
 2023-04-30 23:25:46 +08:00
Marius Bakke
7207c372fb
gnu: ungoogled-chromium: Update to 111.0.5563.146-1. 
* gnu/packages/chromium.scm (%preserved-third-party-files): Adjust for M111.
(%chromium-version): Set to 111.0.5563.146.
(%ungoogled-origin): Update hash.
(%chromium-gcc-patchset, gcc-patch, %gcc-patches): Remove variables.
(%arch-patches): Remove obsolete.
(ungoogled-chromium)[source](sha256): Update hash.
 2023-04-30 23:25:46 +08:00
Marius Bakke
8807828ff0
gnu: ungoogled-chromium: Update to 110.0.5481.177-1. 
* gnu/packages/chromium.scm (%preserved-third-party-files): Adjust for M110.
(%chromium-version): Set to 110.0.5481.177.
(%debian-revision): Bump.
(%ungoogled-origin, %debian-origin): Update hashes.
(%debian-patches): Remove obsolete patch.
(ungoogled-chromium-snippet): Use upstream jsoncpp unbundle script.
(ungoogled-chromium)[source](sha256): Update hash.
[arguments]: Remove obsolete configure flags and substitution.  Use system libffi.
 2023-04-30 23:25:45 +08:00
Marius Bakke
a03743f016
gnu: ungoogled-chromium: Don't add absolute references to libGL and libvulkan. 
Keeping track of the uses of these libraries is a lot of work and ultimately
not worth the trouble -- especially since Chromium supports multiple libGL's
with different ABIs.  Instead we take the easy route and rely on a search path.

* gnu/packages/chromium.scm (ungoogled-chromium)[arguments]: Remove patching
of libGL.so and libvulkan.so.  Instead wrap with LD_LIBRARY_PATH.
 2023-04-30 23:25:45 +08:00
Efraim Flashner
5834953573
gnu: emacs: Use librsvg-for-system. 
* gnu/packages/emacs.scm (emacs)[inputs]: Replace librsvg input logic
with librsvg-for-system.
 2023-04-30 15:17:25 +03:00
Efraim Flashner
7e1d02d53c
gnu: deluge: Use librsvg-for-system. 
* gnu/packages/bittorent.scm (deluge)[native-inputs]: Replace librsvg
input logic with librsvg-for-system.
 2023-04-30 15:16:34 +03:00
Efraim Flashner
5eaf5c9064
gnu: cl-clsql: Build with mariadb. 
* gnu/packages/lisp-xyz.scm (cl-clsql)[inputs]: Remove mysql. Add
mariadb:dev.
 2023-04-30 12:37:43 +03:00
Efraim Flashner
fee5561746
gnu: sbcl-clsql: Build with mariadb. 
* gnu/packages/lisp-xyz.scm (sbcl-clsql)[inputs]: Remove mysql. Add
mariadb:dev, mariadb:lib.
[arguments]: Adjust custom 'build-helper-library phase to build with
and link to mariadb.
 2023-04-30 12:37:42 +03:00
Efraim Flashner
5a43894247
gnu: opensmtpd-extras: Build with mariadb. 
* gnu/packages/mail.scm (opensmtpd-extras)[inputs]: Remove mysql. Add
mariadb:dev.
 2023-04-30 12:35:56 +03:00
Efraim Flashner
45363fdb17
gnu: ulogd: Build with mariadb. 
* gnu/packages/linux.scm (ulogd)[inputs]: Remove mysql. Add mariadb:dev.
[arguments]: Adjust configure-flags accordingly.
 2023-04-30 12:35:56 +03:00
Efraim Flashner
0fbf12a96a
gnu: inspircd: Build with mariadb. 
* gnu/packages/irc.scm (inspircd)[inputs]: Remove mysql. Add mariadb:dev.
 2023-04-30 12:35:56 +03:00
Efraim Flashner
dbd0d779dd
gnu: neko: Build with mariadb. 
* gnu/packages/haxe.scm (neko)[inputs]: Remove mysql. Add mariadb:dev,
mariadb:lib.
 2023-04-30 12:35:55 +03:00
Efraim Flashner
f2b9e2f935
gnu: ghc-mysql: Build with mariadb. 
* gnu/packages/haskell-xyz.scm (ghc-mysql)[inputs]: Remove mysql. Add
mariadb:dev.
 2023-04-30 12:35:55 +03:00
Efraim Flashner
427439526c
gnu: sysbench: Build with mariadb. 
* gnu/packages/benchmark.scm (sysbench)[arguments]: Remove mysql flag.
[inputs]: Remove mysql. Add mariadb:dev.
 2023-04-30 12:35:55 +03:00
Ricardo Wurmus
7e1d6bb247
gnu: r-ffbase: Fix build with R 4.3.0. 
* gnu/packages/cran.scm (r-ffbase)[arguments]: Add phase 'r-compatibility.
 2023-04-30 10:57:37 +02:00
Leo Famulari
3b3c7ef1f7
gnu: mod-wsgi: Make sure not to keep a store reference to HTTPD. 
* gnu/packages/web.scm (mod-wsgi)[inputs]: Move httpd ...
[native-inputs]: ... to here.
[arguments]: Forbid keeping a reference to httpd.
 2023-04-30 04:47:19 -04:00
Leo Famulari
bdbf3e36cf
gnu: 389-ds-base: Make sure not to keep a store reference to HTTPD. 
* gnu/packages/openldap.scm (389-ds-base)[inputs]: Move httpd ...
[native-inputs]: ... to here.
[arguments]: Forbid keeping a reference to httpd.
 2023-04-30 04:47:19 -04:00
Leo Famulari
15172a5c1e
gnu: neko: Make sure not to keep a store reference to HTTPD. 
* gnu/packages/haxe.scm (neko): Move httpd ...
[native-inputs]: ... to here.
[arguments]: Forbid keeping a reference to httpd.
 2023-04-30 04:47:19 -04:00
Leo Famulari
3b5b668303
build-system/cmake: Add support for the #:disallowed-references key. 
* guix/build-system/cmake.scm (cmake-build, cmake-cross-build):
Add #:disallowed-references.
 2023-04-30 04:47:18 -04:00
Leo Famulari
d3e91a83b6
gnu: httpd: Update to 2.4.57 [security fixes]. 
Fixes CVE-2023-27522, CVE-2023-25690, CVE-2022-37436, CVE-2022-36760,
CVE-2006-20001, CVE-2022-31813, CVE-2022-30556, CVE-2022-30522,
CVE-2022-29404, CVE-2022-28615, CVE-2022-28614, CVE-2022-28330,
CVE-2022-26377, CVE-2022-23943, CVE-2022-22721, CVE-2022-22720,
and CVE-2022-22719.

* gnu/packages/web.scm (httpd): Update to 2.4.57.
(httpd/pinned): New variable.
* gnu/packages/gnome.scm (libsoup-minimal): Replace httpd with httpd/pinned.
 2023-04-30 04:47:18 -04:00
Ricardo Wurmus
85c137adde
gnu: r-motifstack: Update to 1.44.1. 
* gnu/packages/bioconductor.scm (r-motifstack): Update to 1.44.1.
 2023-04-29 23:52:00 +02:00
Ricardo Wurmus
f2ad160acd
gnu: r-chippeakanno: Update to 3.34.1. 
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.34.1.
 2023-04-29 23:52:00 +02:00
Efraim Flashner
8fe5ed47cb
gnu: rust: Disable support for aarch64-linux, riscv64-linux. 
Support is currently broken and blocks too many other packages.

* gnu/packages/gnome.scm (librsvg-for-system): Only use librsvg on
x86_64-linux.
* gnu/packages/rust.scm (rust-bootstrap)[supported-systems]: Remove
aarch64-linux, riscv64-linux.
 2023-04-29 23:22:30 +03:00
Ricardo Wurmus
8b66099722
gnu: r-norm: Update to 1.0-11.0. 
* gnu/packages/statistics.scm (r-norm): Update to 1.0-11.0.
 2023-04-29 20:28:10 +02:00
Ricardo Wurmus
1d664f404a
gnu: r-lme4: Update to 1.1-33. 
* gnu/packages/statistics.scm (r-lme4): Update to 1.1-33.
 2023-04-29 20:28:10 +02:00
Ricardo Wurmus
eda8cd78b1
gnu: r-sfsmisc: Update to 1.1-15. 
* gnu/packages/statistics.scm (r-sfsmisc): Update to 1.1-15.
 2023-04-29 20:28:10 +02:00
Ricardo Wurmus
3f4b0ff490
gnu: r-checkmate: Update to 2.2.0. 
* gnu/packages/statistics.scm (r-checkmate): Update to 2.2.0.
 2023-04-29 20:28:10 +02:00
Ricardo Wurmus
3f106a8604
gnu: r-xml2: Update to 1.3.4. 
* gnu/packages/statistics.scm (r-xml2): Update to 1.3.4.
 2023-04-29 20:28:10 +02:00
Ricardo Wurmus
55bc3815aa
gnu: r-dplyr: Update to 1.1.2. 
* gnu/packages/statistics.scm (r-dplyr): Update to 1.1.2.
 2023-04-29 20:28:10 +02:00
Ricardo Wurmus
faff9ff1c3
gnu: r-rlang: Update to 1.1.1. 
* gnu/packages/statistics.scm (r-rlang): Update to 1.1.1.
 2023-04-29 20:28:10 +02:00
Ricardo Wurmus
c7950f0f10
gnu: r-microbenchmark: Update to 1.4.10. 
* gnu/packages/statistics.scm (r-microbenchmark): Update to 1.4.10.
 2023-04-29 20:28:09 +02:00
Ricardo Wurmus
5ebe950281
gnu: r-mass: Update to 7.3-59. 
* gnu/packages/statistics.scm (r-mass): Update to 7.3-59.
 2023-04-29 20:28:09 +02:00
Ricardo Wurmus
5ab7f2d65e
gnu: r-measurements: Update to 1.5.1. 
* gnu/packages/cran.scm (r-measurements): Update to 1.5.1.
 2023-04-29 20:28:09 +02:00
Ricardo Wurmus
a465cb32c2
gnu: r-vroom: Update to 1.6.3. 
* gnu/packages/cran.scm (r-vroom): Update to 1.6.3.
 2023-04-29 20:28:09 +02:00
Ricardo Wurmus
eb374d2302
gnu: r-qtl2: Update to 0.32. 
* gnu/packages/cran.scm (r-qtl2): Update to 0.32.
 2023-04-29 20:28:09 +02:00
Ricardo Wurmus
dea96222c3
gnu: r-qtl: Update to 1.60. 
* gnu/packages/cran.scm (r-qtl): Update to 1.60.
 2023-04-29 20:28:09 +02:00
Ricardo Wurmus
cf26acef53
gnu: r-yardstick: Update to 1.2.0. 
* gnu/packages/cran.scm (r-yardstick): Update to 1.2.0.
[propagated-inputs]: Add r-cli, r-lifecycle, and r-tibble.
 2023-04-29 20:28:09 +02:00
Ricardo Wurmus
d361061ec8
gnu: r-spatstat: Update to 3.0-5. 
* gnu/packages/cran.scm (r-spatstat): Update to 3.0-5.
 2023-04-29 20:28:09 +02:00
Ricardo Wurmus
d016035a93
gnu: r-spatstat-model: Update to 3.2-3. 
* gnu/packages/cran.scm (r-spatstat-model): Update to 3.2-3.
 2023-04-29 20:28:09 +02:00