Commit graph

70753 commits

Author SHA1 Message Date
zimoun
75bdab83cc
gnu: r-vsn: Update to 3.58.0.
* gnu/packages/bioinformatics.scm (r-vsn): Update to 3.58.0.
2020-12-09 12:12:42 +01:00
zimoun
6a6f38b89e
gnu: r-affy: Update to 1.68.0.
* gnu/packages/bioinformatics.scm (r-affy): Update to 1.68.0.
2020-12-09 12:12:42 +01:00
zimoun
d6750c6587
gnu: r-affyio: Update to 1.60.0.
* gnu/packages/bioinformatics.scm (r-affyio): Update to 1.60.0.
2020-12-09 12:12:42 +01:00
Ricardo Wurmus
471ceb5e5e
gnu: r-mzr: Fix linking.
* gnu/packages/bioinformatics.scm (r-mzr)[arguments]: Fix linking with rhdf5
libraries.
2020-12-09 12:12:42 +01:00
Ricardo Wurmus
badb4678bd
gnu: r-mzr: Update to 2.24.1.
* gnu/packages/bioinformatics.scm (r-mzr): Update to 2.24.1.
2020-12-09 12:12:42 +01:00
zimoun
4d9e168db8
gnu: r-protgenerics: Update to 1.22.0.
* gnu/packages/bioinformatics.scm (r-protgenerics): Update to 1.22.0.
2020-12-09 12:12:42 +01:00
zimoun
858eb988a0
gnu: r-sva: Update to 3.38.0.
* gnu/packages/bioinformatics.scm (r-sva): Update to 3.38.0.
2020-12-09 12:12:42 +01:00
zimoun
99bd4f2d7c
gnu: r-methylkit: Update to 1.16.0.
* gnu/packages/bioinformatics.scm (r-methylkit): Update to 1.16.0.
2020-12-09 12:12:42 +01:00
zimoun
2ed79a0a42
gnu: r-copywriter: Update to 2.22.0.
* gnu/packages/bioinformatics.scm (r-copywriter): Update to 2.22.0.
2020-12-09 12:12:41 +01:00
zimoun
36fd725b6f
gnu: r-chipseq: Update to 1.40.0.
* gnu/packages/bioinformatics.scm (r-chipseq): Update to 1.40.0.
2020-12-09 12:12:41 +01:00
zimoun
cad3eb4eb4
gnu: r-annotationfilter: Update to 1.14.0.
* gnu/packages/bioinformatics.scm (r-annotationfilter): Update to 1.14.0.
2020-12-09 12:12:41 +01:00
zimoun
ec0050c0a9
gnu: r-tximport: Update to 1.18.0.
* gnu/packages/bioinformatics.scm (r-tximport): Update to 1.18.0.
2020-12-09 12:12:41 +01:00
Roel Janssen
6d5a4dd0a7
gnu: r-mutationalpatterns: Update to 3.0.1.
* gnu/packages/bioinformatics.scm (r-mutationalpatterns): Update to 3.0.1.
[native-inputs]: Add r-knitr.
[propagated-inputs]: Add r-bsgenome, r-dplyr, r-ggalluvial,
r-magrittr, r-purrr, r-stringr, r-tibble, and r-tidyr; remove
r-reshape2 and r-summarizedexperiment.
2020-12-09 12:12:41 +01:00
zimoun
a823a74525
gnu: r-rcas: Update to 1.16.0.
* gnu/packages/bioinformatics.scm (r-rcas): Update to 1.16.0.
2020-12-09 12:12:41 +01:00
zimoun
2c15a1c502
gnu: r-bamsignals: Update to 1.22.0.
* gnu/packages/bioinformatics.scm (r-bamsignals): Update to 1.22.0.
2020-12-09 12:12:41 +01:00
zimoun
728369634f
gnu: r-rhtslib: Update to 1.22.0.
* gnu/packages/bioinformatics.scm (r-rhtslib): Update to 1.22.0.
2020-12-09 12:12:41 +01:00
zimoun
b0d85e36f1
gnu: r-zlibbioc: Update to 1.36.0.
* gnu/packages/bioinformatics.scm (r-zlibbioc): Update to 1.36.0.
2020-12-09 12:12:40 +01:00
zimoun
329879b70c
gnu: r-seqlogo: Update to 1.56.0.
* gnu/packages/bioinformatics.scm (r-seqlogo): Update to 1.56.0.
2020-12-09 12:12:40 +01:00
zimoun
2a70c96e3d
gnu: r-genomation: Update to 1.22.0.
* gnu/packages/bioinformatics.scm (r-genomation): Update to 1.22.0.
2020-12-09 12:12:40 +01:00
zimoun
44bf116f03
gnu: r-seqpattern: Update to 1.22.0.
* gnu/packages/bioinformatics.scm (r-seqpattern): Update to 1.22.0.
2020-12-09 12:12:40 +01:00
zimoun
a180744b37
gnu: r-impute: Update to 1.64.0.
* gnu/packages/bioinformatics.scm (r-impute): Update to 1.64.0.
2020-12-09 12:12:40 +01:00
zimoun
e2e11f095f
gnu: r-bsgenome: Update to 1.58.0.
* gnu/packages/bioinformatics.scm (r-bsgenome): Update to 1.58.0.
2020-12-09 12:12:40 +01:00
Roel Janssen
6a7de43a58
gnu: r-topgo: Update to 2.42.0.
* gnu/packages/bioinformatics.scm (r-topgo): Update to 2.42.0.
2020-12-09 12:12:40 +01:00
Roel Janssen
26e2184fc1
gnu: r-genomicfeatures: Update to 1.42.1.
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.42.1.
2020-12-09 12:12:40 +01:00
zimoun
92377e7fea
gnu: r-rtracklayer: Update to 1.50.0.
* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.50.0.
2020-12-09 12:12:39 +01:00
zimoun
077e813657
gnu: r-genomicalignments: Update to 1.26.0.
* gnu/packages/bioinformatics.scm (r-genomicalignments): Update to 1.26.0.
2020-12-09 12:12:39 +01:00
zimoun
3ca5b05474
gnu: r-variantannotation: Update to 1.36.0.
* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.36.0.
[propagated-inputs]: Add r-matrixgenerics.
2020-12-09 12:12:39 +01:00
zimoun
8607a5394b
gnu: r-summarizedexperiment: Update to 1.20.0.
* gnu/packages/bioinformatics.scm (r-summarizedexperiment): Update to 1.20.0.
[propagated-inputs]: Add r-matrixgenerics.
2020-12-09 12:12:39 +01:00
zimoun
9168ab0911
gnu: r-rsamtools: Update to 2.6.0.
* gnu/packages/bioinformatics.scm (r-rsamtools): Update to 2.6.0.
2020-12-09 12:12:39 +01:00
zimoun
5d60273b77
gnu: r-biostrings: Update to 2.58.0.
* gnu/packages/bioinformatics.scm (r-biostrings): Update to 2.58.0.
2020-12-09 12:12:39 +01:00
Roel Janssen
444b101dc2
gnu: r-biocparallel: Update to 1.24.1.
* gnu/packages/bioconductor.scm (r-biocparallel): Update to 1.24.1.
2020-12-09 12:12:39 +01:00
zimoun
4fac3fe67d
gnu: r-biomart: Update to 2.46.0.
* gnu/packages/bioinformatics.scm (r-biomart): Update to 2.46.0.
2020-12-09 12:12:39 +01:00
zimoun
f517365cef
gnu: r-annotationdbi: Update to 1.52.0.
* gnu/packages/bioinformatics.scm (r-annotationdbi): Update to 1.52.0.
2020-12-09 12:12:39 +01:00
zimoun
9103041d13
gnu: r-biobase: Update to 2.50.0.
* gnu/packages/bioinformatics.scm (r-biobase): Update to 2.50.0.
2020-12-09 12:12:38 +01:00
zimoun
7641dba3e6
gnu: r-genomicranges: Update to 1.42.0.
* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.42.0.
2020-12-09 12:12:38 +01:00
zimoun
d972ab690e
gnu: r-limma: Update to 3.46.0.
* gnu/packages/bioinformatics.scm (r-limma): Update to 3.46.0.
2020-12-09 12:12:38 +01:00
zimoun
5996929b36
gnu: r-edger: Update to 3.32.0.
* gnu/packages/bioinformatics.scm (r-edger): Update to 3.32.0.
2020-12-09 12:12:38 +01:00
zimoun
cde7fcedf9
gnu: r-genomeinfodb: Update to 1.26.0.
* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.26.0.
2020-12-09 12:12:38 +01:00
zimoun
2ae3b7db24
gnu: r-bioccheck: Update to 1.26.0.
* gnu/packages/bioinformatics.scm (r-bioccheck): Update to 1.26.0.
2020-12-09 12:12:38 +01:00
zimoun
1160c83caf
gnu: r-biocstyle: Update to 2.18.0.
* gnu/packages/bioinformatics.scm (r-biocstyle): Update to 2.18.0.
2020-12-09 12:12:38 +01:00
zimoun
182a080127
gnu: r-biocviews: Update to 1.58.0.
* gnu/packages/bioinformatics.scm (r-biocviews): Update to 1.58.0.
2020-12-09 12:12:38 +01:00
zimoun
16a4822a07
gnu: r-grohmm: Update to 1.24.0.
* gnu/packages/bioinformatics.scm (r-grohmm): Update to 1.24.0.
2020-12-09 12:12:37 +01:00
Roel Janssen
5598f53497
gnu: r-systempiper: Update to 1.24.2.
* gnu/packages/bioinformatics.scm (r-systempiper): Update to 1.24.2.
[propagated-inputs]: Add r-iranges.
2020-12-09 12:12:37 +01:00
zimoun
a05bb428e4
gnu: r-shortread: Update to 1.48.0.
* gnu/packages/bioinformatics.scm (r-shortread): Update to 1.48.0.
2020-12-09 12:12:37 +01:00
zimoun
74204b48eb
gnu: r-gostats: Update to 2.56.0.
* gnu/packages/bioinformatics.scm (r-gostats): Update to 2.56.0.
2020-12-09 12:12:37 +01:00
zimoun
afbc8e1433
gnu: r-category: Update to 2.56.0.
* gnu/packages/bioinformatics.scm (r-category): Update to 2.56.0.
2020-12-09 12:12:37 +01:00
zimoun
03312f052a
gnu: r-gseabase: Update to 1.52.0.
* gnu/packages/bioinformatics.scm (r-gseabase): Update to 1.52.0.
2020-12-09 12:12:37 +01:00
zimoun
7a57b229b6
gnu: r-rbgl: Update to 1.66.0.
* gnu/packages/bioinformatics.scm (r-rbgl): Update to 1.66.0.
2020-12-09 12:12:37 +01:00
zimoun
4451918e3a
gnu: r-annotationforge: Update to 1.32.0.
* gnu/packages/bioinformatics.scm (r-annotationforge): Update to 1.32.0.
2020-12-09 12:12:37 +01:00
zimoun
a323c1e9b4
gnu: r-dexseq: Update to 1.36.0.
* gnu/packages/bioinformatics.scm (r-dexseq): Update to 1.36.0.
2020-12-09 12:12:37 +01:00