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Author SHA1 Message Date
Ricardo Wurmus
466bf3af89
gnu: r-genomicfeatures: Update to 1.32.3. 
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.32.3.
 2018-10-30 21:41:12 +01:00
Ricardo Wurmus
dd0216e0e7
gnu: r-delayedarray: Update to 0.6.6. 
* gnu/packages/bioinformatics.scm (r-delayedarray): Update to 0.6.6.
 2018-10-30 21:40:57 +01:00
Ricardo Wurmus
72408357fa
gnu: r-genomicranges: Update to 1.32.7. 
* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.32.7.
 2018-10-30 21:40:48 +01:00
Ricardo Wurmus
9dad1957ab
gnu: r-limma: Update to 3.36.5. 
* gnu/packages/bioinformatics.scm (r-limma): Update to 3.36.5.
 2018-10-30 21:40:40 +01:00
Ricardo Wurmus
57cf6a14f0
gnu: r-edger: Update to 3.22.5. 
* gnu/packages/bioinformatics.scm (r-edger): Update to 3.22.5.
 2018-10-30 21:40:32 +01:00
Ricardo Wurmus
eb890466fa
gnu: r-genomeinfodbdata: Update to 1.1.0. 
* gnu/packages/bioinformatics.scm (r-genomeinfodbdata): Update to 1.1.0.
 2018-10-30 21:40:22 +01:00
Ricardo Wurmus
e563acb96b
gnu: r-iranges: Update to 2.14.12. 
* gnu/packages/bioinformatics.scm (r-iranges): Update to 2.14.12.
 2018-10-30 21:40:12 +01:00
Ricardo Wurmus
192c19f484
gnu: r-vegan: Update to 2.5-3. 
* gnu/packages/bioinformatics.scm (r-vegan): Update to 2.5-3.
 2018-10-30 21:40:00 +01:00
Ricardo Wurmus
696e1ce263
gnu: r-graph: Update to 1.58.2. 
* gnu/packages/bioconductor.scm (r-graph): Update to 1.58.2.
 2018-10-30 21:39:50 +01:00
Ricardo Wurmus
6ab5670aba
gnu: r-nloptr: Update to 1.2.1. 
* gnu/packages/statistics.scm (r-nloptr): Update to 1.2.1.
[native-inputs]: Add r-knitr and gfortran.
 2018-10-30 21:39:39 +01:00
Ricardo Wurmus
c5bd8a7c23
gnu: r-devtools: Update to 2.0.1. 
* gnu/packages/statistics.scm (r-devtools): Update to 2.0.1.
[propagated-inputs]: Remove r-whisker; add r-callr, r-cli, r-pkgbuild,
r-pkgload, r-rcmdcheck, r-remotes, r-sessioninfo, and r-usethis.
 2018-10-30 21:39:29 +01:00
Ricardo Wurmus
aa99568639
gnu: r-evaluate: Update to 0.12. 
* gnu/packages/statistics.scm (r-evaluate): Update to 0.12.
[propagated-inputs]: Remove r-stringr.
 2018-10-30 21:39:16 +01:00
Ricardo Wurmus
60aac7ec16
gnu: r-robustbase: Update to 0.93-3. 
* gnu/packages/statistics.scm (r-robustbase): Update to 0.93-3.
 2018-10-30 21:39:06 +01:00
Ricardo Wurmus
16508df1d3
gnu: r-cardata: Update to 3.0-2. 
* gnu/packages/statistics.scm (r-cardata): Update to 3.0-2.
 2018-10-30 21:38:55 +01:00
Ricardo Wurmus
98a4b9d040
gnu: r-zoo: Update to 1.8-4. 
* gnu/packages/statistics.scm (r-zoo): Update to 1.8-4.
 2018-10-30 21:38:35 +01:00
Ricardo Wurmus
834f203c07
gnu: r-tidyselect: Update to 0.2.5. 
* gnu/packages/statistics.scm (r-tidyselect): Update to 0.2.5.
 2018-10-30 21:38:25 +01:00
Ricardo Wurmus
33fb92aacd
gnu: r-doparallel: Update to 1.0.14. 
* gnu/packages/statistics.scm (r-doparallel): Update to 1.0.14.
 2018-10-30 21:38:16 +01:00
Ricardo Wurmus
3ea7aefd59
gnu: r-snow: Update to 0.4-3. 
* gnu/packages/statistics.scm (r-snow): Update to 0.4-3.
 2018-10-30 21:38:03 +01:00
Ricardo Wurmus
62a7492c90
gnu: r-plotrix: Update to 3.7-4. 
* gnu/packages/statistics.scm (r-plotrix): Update to 3.7-4.
 2018-10-30 21:37:53 +01:00
Ricardo Wurmus
943cab4f72
gnu: r-rstudioapi: Update to 0.8. 
* gnu/packages/statistics.scm (r-rstudioapi): Update to 0.8.
 2018-10-30 21:37:35 +01:00
Ricardo Wurmus
960425c9e3
gnu: r-commonmark: Update to 1.6. 
* gnu/packages/statistics.scm (r-commonmark): Update to 1.6.
 2018-10-30 21:37:25 +01:00
Ricardo Wurmus
e028eaa992
gnu: r-coda: Update to 0.19-2. 
* gnu/packages/statistics.scm (r-coda): Update to 0.19-2.
 2018-10-30 21:37:14 +01:00
Ricardo Wurmus
672ba7494b
gnu: r-data-table: Update to 1.11.8. 
* gnu/packages/statistics.scm (r-data-table): Update to 1.11.8.
 2018-10-30 21:37:03 +01:00
Ricardo Wurmus
f75ee8c691
gnu: r-dplyr: Update to 0.7.7. 
* gnu/packages/statistics.scm (r-dplyr): Update to 0.7.7.
 2018-10-30 21:36:54 +01:00
Ricardo Wurmus
17f6198f06
gnu: r-rlang: Update to 0.3.0.1. 
* gnu/packages/statistics.scm (r-rlang): Update to 0.3.0.1.
 2018-10-30 21:36:44 +01:00
Ricardo Wurmus
822863f8f9
gnu: r-r6: Update to 2.3.0. 
* gnu/packages/statistics.scm (r-r6): Update to 2.3.0.
 2018-10-30 21:36:35 +01:00
Ricardo Wurmus
3a83251c4f
gnu: r-testthat: Update to 2.0.1. 
* gnu/packages/statistics.scm (r-testthat): Update to 2.0.1.
 2018-10-30 21:36:24 +01:00
Ricardo Wurmus
cb448dd251
gnu: r-microbenchmark: Update to 1.4-6. 
* gnu/packages/statistics.scm (r-microbenchmark): Update to 1.4-6.
 2018-10-30 21:36:13 +01:00
Ricardo Wurmus
9f7438355d
gnu: r-mine: Update to 0.6. 
* gnu/packages/statistics.scm (r-mine): Update to 0.6.
 2018-10-30 21:36:04 +01:00
Ricardo Wurmus
9413424d2d
gnu: r-ggplot2: Update to 3.1.0. 
* gnu/packages/statistics.scm (r-ggplot2): Update to 3.1.0.
 2018-10-30 21:35:52 +01:00
Ricardo Wurmus
058394967c
gnu: r-digest: Update to 0.6.18. 
* gnu/packages/statistics.scm (r-digest): Update to 0.6.18.
 2018-10-30 21:35:40 +01:00
Ricardo Wurmus
b85f805090
gnu: r-mgcv: Update to 1.8-25. 
* gnu/packages/statistics.scm (r-mgcv): Update to 1.8-25.
 2018-10-30 21:35:26 +01:00
Ricardo Wurmus
2f5e8f6094
gnu: r-mass: Update to 7.3-51. 
* gnu/packages/statistics.scm (r-mass): Update to 7.3-51.
 2018-10-30 21:35:12 +01:00
Ricardo Wurmus
2ea75a8369
gnu: Add r-npsurv. 
* gnu/packages/cran.scm (r-npsurv): New variable.
 2018-10-30 21:35:03 +01:00
Ricardo Wurmus
7c7ee6cf4c
gnu: Add r-lsei. 
* gnu/packages/cran.scm (r-lsei): New variable.
 2018-10-30 21:34:55 +01:00
Ricardo Wurmus
74cc74e434
gnu: Add r-summarytools. 
* gnu/packages/cran.scm (r-summarytools): New variable.
 2018-10-30 21:34:45 +01:00
Ricardo Wurmus
319a80ce96
gnu: Add r-pander. 
* gnu/packages/cran.scm (r-pander): New variable.
 2018-10-30 21:34:35 +01:00
Ricardo Wurmus
9b02d1a11e
gnu: Add r-rapportools. 
* gnu/packages/cran.scm (r-rapportools): New variable.
 2018-10-30 21:34:25 +01:00
Ricardo Wurmus
5df4e27fec
gnu: Add r-rcmdcheck. 
* gnu/packages/cran.scm (r-rcmdcheck): New variable.
 2018-10-30 21:34:15 +01:00
Ricardo Wurmus
7d8f34707a
gnu: Add r-xopen. 
* gnu/packages/cran.scm (r-xopen): New variable.
 2018-10-30 21:34:05 +01:00
Ricardo Wurmus
cbc8e6dd4a
gnu: Add r-remotes. 
* gnu/packages/cran.scm (r-remotes): New variable.
 2018-10-30 21:33:56 +01:00
Ricardo Wurmus
993426244e
gnu: Add r-sessioninfo. 
* gnu/packages/cran.scm (r-sessioninfo): New variable.
 2018-10-30 21:33:47 +01:00
Ricardo Wurmus
efefd3ec42
gnu: Add r-usethis. 
* gnu/packages/cran.scm (r-usethis): New variable.
 2018-10-30 21:33:37 +01:00
Ricardo Wurmus
153e5b2ddc
gnu: Add r-clisymbols. 
* gnu/packages/cran.scm (r-clisymbols): New variable.
 2018-10-30 21:33:25 +01:00
Ricardo Wurmus
d6871153c8
gnu: Add r-fs. 
* gnu/packages/cran.scm (r-fs): New variable.
 2018-10-30 21:33:13 +01:00
Ricardo Wurmus
21405e81e7
gnu: Add r-gh. 
* gnu/packages/cran.scm (r-gh): New variable.
 2018-10-30 21:33:00 +01:00
Ricardo Wurmus
03f8011220
gnu: Add r-ini. 
* gnu/packages/cran.scm (r-ini): New variable.
 2018-10-30 21:32:45 +01:00
Danny Milosavljevic
4df3e06210
gnu: rust: Document upstream's assessment. 
* gnu/packages/patches/rust-1.25-accept-more-detailed-gdb-lines.patch: Add URL.
 2018-10-30 20:42:04 +01:00
Danny Milosavljevic
52bc7df1a1
gnu: rust: Remove binary bootstrapper. 
* gnu/packages/rust.scm (rust-bootstrap): Delete variable.
 2018-10-30 20:42:00 +01:00
Danny Milosavljevic
44d530ef09
gnu: rust@1.23.0: Bootstrap from rust@1.22.0. 
* gnu/packages/rust.scm (rust-1.23): Bootstrap from rust@1.22.0.
 2018-10-30 20:41:55 +01:00
Danny Milosavljevic
a75b8c08c0
gnu: rust@1.23.0: Inherit from rust@1.22.0. 
* gnu/packages/rust.scm (rust-1.23)[inherit]: Inherit from rust-1.22.
[arguments]: Inherit from rust-1.22.  Delete "remove-ar" phase.
 2018-10-30 20:41:50 +01:00
Danny Milosavljevic
7bf169f75c
gnu: rust: Hide "ar" entry from rust@1.21.0. 
* gnu/packages/rust.scm (rust-1.21)[arguments]<#:phases>[remove-ar]: New
phase.
 2018-10-30 20:41:45 +01:00
Danny Milosavljevic
46cb1c97cb
gnu: rust: Accept more detailed gdb lines for simple enums. 
* gnu/packages/patches/rust-1.25-accept-more-detailed-gdb-lines.patch: Modify.
* gnu/packages/rust.scm (rust-1.25)[arguments]<#:phases>[disable-nil-enum-test]:
Delete phase.
 2018-10-30 20:20:55 +01:00
Efraim Flashner
a6f2afeee1
gnu: zathura-pdf-mupdf: Simplify arguments. 
* gnu/packages/pdf.scm (zathura-pdf-mupdf)[arguments]: Remove custom
'patch-plugin-directory phase, replacd with configure-flag.
 2018-10-30 11:15:40 +02:00
Efraim Flashner
24fc8f055d
gnu: zathura-pdf-mupdf: Update to 0.3.4. 
* gnu/packages/pdf.scm (zathura-pdf-mupdf): Update to 0.3.4.
[source]: Remove patch.
* gnu/packages/patches/zathura-pdf-mupdf-link-to-jpeg-libraries.patch:
Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2018-10-30 11:15:39 +02:00
Efraim Flashner
e726f0939e
gnu: mupdf: Update license list. 
* gnu/packages/pdf.scm (mupdf)[license]: Update the license list.
 2018-10-30 11:15:36 +02:00
Efraim Flashner
b1435fe735
gnu: mupdf: Update to 1.14. 
* gnu/packages/pdf.scm (mupdf): Update to 1.14.
[source]: Don't remove all the bundled libraries.
[arguments]: Add 'configure-flags to use system libraries.
 2018-10-30 11:15:09 +02:00
Efraim Flashner
f8ddf719f3
gnu: mujs: Install shared library. 
* gnu/packages/javascript.scm (mujs)[arguments]: Add custom phase to
install libmujs.so.
 2018-10-30 11:03:48 +02:00
Efraim Flashner
1371e2250a
gnu: mujs: Update to 1.0.5. 
* gnu/packages/javascript.scm (mujs): Update to 1.0.5.
 2018-10-30 11:03:06 +02:00
Leo Famulari
a2717e6986
gnu: calcurse: Use HTTPS URLs. 
Reported by Marco van Hulten <marco@hulten.org>.

* gnu/packages/calcurse.scm (calcurse)[source, home-page]: Use HTTPS URLs.
 2018-10-29 20:45:57 -04:00
Leo Famulari
b4c93a78c8
gnu: xorg-server: Update to 1.20.3 [fixes CVE-2018-14665]. 
* gnu/packages/xorg.scm (xorg-server): Update to 1.20.3.
 2018-10-28 18:22:46 -04:00
Mathieu Othacehe
81f12f33b7
gnu: linux-libre: Enable BOCHS DRM support. 
* gnu/packages/aux-files/linux-libre/4.19-x86_64.conf: Build DRM BOCHS support
as a module.  It adds DRM support for BOCHS dispi vga interface used by
qemu (-vga std option). It will also be useful for QEMU 3.0 to enable the new
"bochs-display" display device.
* gnu/packages/aux-files/linux-libre/4.19-i686.conf: Ditto.
 2018-10-28 20:42:50 +09:00
Efraim Flashner
852a5692bb
gnu: qt@4: Use invoke. 
* gnu/packages/qt.scm (qt@4)[arguments]: Use invoke.
 2018-10-28 09:52:46 +02:00
Efraim Flashner
1f71daf499
gnu: qt@4: Update build config. 
* gnu/packages/qt.scm (qt@4)[arguments]: Substitute hardcoded '/bin/ls'
invocation. Add configure-flags to not build the examples or demos.
Don't use the precompiled headers.
 2018-10-28 09:52:38 +02:00
Efraim Flashner
3ea61f9642
gnu: qt: Use invoke. 
* gnu/packages/qt.scm (qt)[arguments]: Use invoke.
 2018-10-28 09:52:16 +02:00
Efraim Flashner
124351efad
gnu: qt: Add vulkan support. 
* gnu/packages/qt.scm (qt, qtbase)[native-inputs]: Add vulkan-headers.
(qt@4)[native-inputs]: Don't add vulkan-headers.
(qttools)[native-inputs]: Add vulkan-headers.
 2018-10-28 09:51:56 +02:00
Efraim Flashner
d28af1991a
gnu: qt: Use system sqlite. 
* gnu/packages/databases.scm (sqlite-with-column-metadata): New
variable.
* gnu/packages/qt.scm (qt, qtbase)[source]: Remove bundled sqlite.
[inputs]: Add sqlite-with-column-metadata.
[arguments]: Add configure-flag to use system sqlite.
 2018-10-28 09:51:25 +02:00
Efraim Flashner
7930cfc989
gnu: qt: Update to 5.11.2. 
* gnu/packages/qt.scm (qt, qtbase, qtsvg, qtimageformats, qtx11extras,
qtxmlpatterns, qtdeclarative, qtconnectivity, qtwebsockets, qtsensors,
qtmultimedia, qtwayland, qtserialport, qtserialbus, qtwebchannel,
qtwebglplugin, qtwebview, qtlocation, qttools, qtscript,
qtquickcontrols, qtquickcontrols2, qtgraphicaleffects, qtgamepad,
qtscxml, qtpurchasing, qtcanvas3d, qtcharts, qtdatavis3d, qtnetworkauth,
qtremoteobjects, qtspeech): Update to 5.11.2.
 2018-10-28 09:51:05 +02:00
Tobias Geerinckx-Rice
2b9b4b1fe3
gnu: hashcat-utils: Update to 1.9. 
And trim lines to 80 characters.

* gnu/packages/password-utils.scm (hashcat-utils): Update to 1.9.
[source]: Parametrise.
 2018-10-28 02:34:07 +01:00
Tobias Geerinckx-Rice
2792d8a865
gnu: fzy: Update to 1.0. 
* gnu/packages/shellutils.scm (fzy): Update to 1.0.
 2018-10-28 02:34:07 +01:00
Tobias Geerinckx-Rice
31b619566d
gnu: fzy: Don't use unstable tarball. 
* gnu/packages/shellutils.scm (fzy)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
 2018-10-28 02:34:07 +01:00
Tobias Geerinckx-Rice
6135735b52
gnu: perl-www-mechanize: Update to 1.89. 
* gnu/packages/web.scm (perl-www-mechanize): Update to 1.89.
 2018-10-28 02:34:06 +01:00
Tobias Geerinckx-Rice
fc82538c15
gnu: perl-xml-xpath: Update to 1.44. 
* gnu/packages/xml.scm (perl-xml-xpath): Update to 1.44.
 2018-10-28 02:34:06 +01:00
Tobias Geerinckx-Rice
a8b12397a1
gnu: flatbuffers: Fix typo in description. 
* gnu/packages/serialization.scm (flatbuffers)[description]: Hyphenate.
 2018-10-28 02:34:06 +01:00
Kei Kebreau
f3dd10dfe7
gnu: libmspack: Update to 0.8 [fixes CVE-2018-{18584,18585,18586}]. 
* gnu/packages/compression.scm (libmspack): Update to 0.8.
 2018-10-27 20:04:20 -04:00
Ludovic Courtès
1f889cac4e
gnu: mailutils: Add dependency on GSASL. 
* gnu/packages/mail.scm (mailutils)[inputs]: Add GSASL.
 2018-10-28 01:10:55 +02:00
Ludovic Courtès
ac3b4b124f
gnu: mailutils: Install modules to …/guile/site/2.2. 
* gnu/packages/mail.scm (mailutils)[arguments]: Pass
"--with-guile-site-dir".
 2018-10-28 01:09:54 +02:00
Efraim Flashner
20a3df0fd3
gnu: mailutils: Update to 3.5. 
* gnu/packages/mail.scm (mailutils): Update to 3.5.
[source]: Remove patch, remove snippet.
[native-inputs]: Remove flex, bison.
[inputs]: Remove guile-2.0, add guile-2.2.
* gnu/packages/patches/mailutils-uninitialized-memory.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2018-10-28 00:02:08 +03:00
Ricardo Wurmus
763d44920d
gnu: guile-sdl2: Update to 0.3.1. 
* gnu/packages/sdl.scm (guile-sdl2): Update to 0.3.1.
 2018-10-27 20:08:50 +02:00
Mădălin Ionel Patrașcu
b509df82de
gnu: Add r-abundant. 
* gnu/packages/cran.scm (r-abundant): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2018-10-27 18:54:39 +02:00
Mădălin Ionel Patrașcu
b5a310056c
gnu: Add r-quic. 
* gnu/packages/cran.scm (r-quic): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2018-10-27 18:54:39 +02:00
Ricardo Wurmus
67e0fb8b49
gnu: Add xrandr-invert-colors. 
* gnu/packages/xdisorg.scm (xrandr-invert-colors): New variable.
 2018-10-27 18:54:39 +02:00
Tomáš Čech
e9a041577a
gnu: Add telegram-purple. 
* gnu/packages/messaging.scm (telegram-purple): New variable.
* gnu/packages/patches/telegram-purple-adjust-test.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2018-10-27 16:39:29 +02:00
Ludovic Courtès
244a0d5aad
gnu: libzmf: Disable '-Werror'. 
Fixes builds on i686-linux.

* gnu/packages/libreoffice.scm (libzmf)[arguments]: New field.
 2018-10-27 16:39:29 +02:00
Pierre Neidhardt
1316413558
gnu: git: Add "subtree" output. 
* gnu/packages/version-control.scm (git)[outputs]: Add "subtree".
 2018-10-27 16:29:47 +02:00
Florian Pelz
abc98e3be5
services: httpd: Allow using it with PHP. 
* gnu/services/web.scm (httpd): Make existing httpd-module API public.
* doc/guix.texi (Apache HTTP Server): Document its usage with PHP-FPM.

Signed-off-by: Christopher Baines <mail@cbaines.net>
 2018-10-27 14:08:45 +01:00
Meiyo Peng
cbea1e8dd2
gnu: lxqt-build-tools: Define LXQT_DATA_DIR and LXQT_ETC_XDG_DIR. 
* gnu/packages/lxqt.scm (lxqt-build-tools)[arguments]: Define LXQT_DATA_DIR
and LXQT_ETC_XDG_DIR in the configure flags.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2018-10-27 19:50:41 +08:00
Meiyo Peng
6f00fb75ca
gnu: lxqt: Correct licenses for several packages. 
* gnu/packages/lxqt.scm (pcmanfm-qt, lximage-qt, pavucontrol-qt, qtermwidget)
(qterminal, screengrab, lxqt): Correct license to GPL2+.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2018-10-27 18:17:08 +08:00
宋文武
a46c00a3d8
gnu: lxqt: Propagate qterminal actually. 
* gnu/packages/lxqt.scm (lxqt)[propagated-inputs]: Fix typo of 'qterminal'.
 2018-10-27 11:34:57 +08:00
Tobias Geerinckx-Rice
3825b44448
gnu: xmlsec-nss: Fix tests (and hence build). 
* gnu/packages/xml.scm (xmlsec-nss)[native-inputs]: Add nss:bin to
provide the certutil command.
 2018-10-27 04:49:19 +02:00
Tobias Geerinckx-Rice
4795e5e177
gnu: units: Update to 2.18. 
* gnu/packages/maths.scm (units): Update to 2.18.
 2018-10-27 04:47:56 +02:00
Tobias Geerinckx-Rice
6d9a690927
gnu: parallel: Update to 20181022. 
* gnu/packages/parallel.scm (parallel): Update to 20181022.
 2018-10-27 04:47:19 +02:00
Tobias Geerinckx-Rice
574d877e40
gnu: gvpe: Update to 3.1. 
* gnu/packages/vpn.scm (gvpe): Update to 3.1.
[source]: Remove obsolete snippet.
[native-inputs]: Add pkg-config.
 2018-10-27 04:47:18 +02:00
Tobias Geerinckx-Rice
b2d286545d
gnu: gama: Update to 2.01. 
* gnu/packages/gps.scm (gama): Update to 2.01.
 2018-10-27 04:47:18 +02:00
Tobias Geerinckx-Rice
b106b78cf8
gnu: perl-x11-xcb: Update to 0.18. 
* gnu/packages/xorg.scm (perl-x11-xcb): Update to 0.18.
 2018-10-27 04:47:18 +02:00
Tobias Geerinckx-Rice
429a332b1c
gnu: flatbuffers: Update to 1.10.0. 
* gnu/packages/serialization.scm (flatbuffers): Update to 1.10.0.
 2018-10-27 04:47:18 +02:00
Eric Bavier
829785c11d
gnu: Add tnef. 
* gnu/packages/mail.scm (tnef): New variable.
 2018-10-26 21:16:42 -05:00
HiPhish
01a0a0c445
gnu: Add lua5.1-lpeg and lua5.1-lmpack. 
* gnu/packages/lua.scm (lua5.1-lpeg): New variable.
* gnu/packages/serialization.scm (lua5.1-libmpack): New variable.

The packages lua-lpeg and lua-libmpack had no Lua 5.1 variants. These
packages will be needed to build Neovim properly.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-10-26 21:17:00 +02:00
Pierre-Antoine Rouby
3239dcd38d
gnu: Add jp2a. 
* gnu/packages/image.scm: New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-10-26 21:16:13 +02:00
Ludovic Courtès
fdf0248428
gnu: sbcl-lift: Fix 'license' field. 
The invalid 'license' field was preventing evaluations from completing.

* gnu/packages/lisp.scm (sbcl-lift)[license]: Change to LICENSE:EXPAT.
 2018-10-26 21:07:03 +02:00
Nikolai Merinov
2e2b8635b9
gnu: rust: Update to 1.28. 
* gnu/packages/rust.scm (rust): Rename to...
(rust-1.27): ... this.
(rust): New variable.
 2018-10-26 18:11:15 +02:00
Nikolai Merinov
e027a494fd
gnu: rust: Work around rust 1.25...1.27 reproducibility issues. 
* gnu/packages/patches/rust-mdbook-support-reproducible-builds-by-forcing-window.search.patch:
New file.
* gnu/local.mk (dist_patch_DATA): Add new patch file.
* gnu/packages/rust.scm (rust-1.19): Use system libssh2 library.
during cargo build.  Note: libgit2 still bundled, because cargo
tests assume specific libgit2 minor release.
(rust-1.23): Inherit native-inputs from previous package.
(rust-1.25): Switch back to llvm 3.9.1 as workaround for
https://github.com/rust-lang/rust/issues/50556 issue.
(rust-1.27): Apply changes from
https://github.com/rust-lang-nursery/mdBook/pull/692 to make
generation of "searchindex.js" files reproducible. Disable cargo
test that required llvm 6.
 2018-10-26 18:11:15 +02:00
Meiyo Peng
1fdcee026b
gnu: Add lxqt. 
* gnu/packages/lxqt.scm (lxqt): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2018-10-26 22:07:05 +08:00
Meiyo Peng
a457e3f6ef
gnu: libqtxdg: Simplify configure flags. 
* gnu/packages/lxqt.scm (libqtxdg)[arugemnts]: Use relative path for
'QTXDGX_ICONENGINEPLUGIN_INSTALL_PATH'.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2018-10-26 22:07:05 +08:00
Meiyo Peng
097166dfb0
gnu: lxqt.scm: Remove ${CMAKE_INSTALL_PREFIX} from DESTINATION path. 
* gnu/packages/lxqt.scm: Remove ${CMAKE_INSTALL_PREFIX} from DESTINATION path.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2018-10-26 22:07:04 +08:00
Meiyo Peng
31fd62c8ca
gnu: Add obconf-qt. 
* gnu/packages/lxqt.scm (obconf-qt): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2018-10-26 22:06:57 +08:00
Meiyo Peng
32b74b7028
gnu: Add compton-conf. 
* gnu/packages/lxqt.scm (compton-conf): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2018-10-26 21:41:38 +08:00
Meiyo Peng
9886134cc6
gnu: Add qps. 
* gnu/packages/lxqt.scm (qps): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2018-10-26 21:36:43 +08:00
Meiyo Peng
7e9e775f44
gnu: Add qterminal. 
* gnu/packages/lxqt.scm (qterminal): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2018-10-26 21:31:15 +08:00
Meiyo Peng
4b88ab554c
gnu: Add screengrab. 
* gnu/packages/lxqt.scm (screengrab): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2018-10-26 21:20:21 +08:00
Meiyo Peng
604bdae7e5
gnu: Add lximage-qt. 
* gnu/packages/lxqt.scm (lximage-qt): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2018-10-26 21:12:17 +08:00
Meiyo Peng
26127ebb97
gnu: lxqt.scm: Sort packages into base, core, etc. 
* gnu/packages/lxqt.scm: Sort packages into base, core, etc.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2018-10-26 21:05:12 +08:00
Meiyo Peng
0aab234954
gnu: Add qtermwidget. 
* gnu/packages/lxqt.scm (qtermwidget): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2018-10-26 18:54:16 +08:00
Tobias Geerinckx-Rice
21c51ebd66
gnu: hplip: Update home page. 
* gnu/packages/cups.scm (hplip)[home-page]: Follow its permanent
redirection.
 2018-10-26 02:30:52 +02:00
Tobias Geerinckx-Rice
b17004f9f9
gnu: hplip: Update to 3.18.9. 
* gnu/packages/cups.scm (hplip): Update to 3.18.9.
[arguments]: Add the resulting libraries to the build's RUNPATH.
 2018-10-26 02:30:52 +02:00
Tobias Geerinckx-Rice
2fba511e0f
gnu: libsigrok: Update to 0.5.1. 
* gnu/packages/electronics.scm (libsigrok): Update to 0.5.1.
[arguments]: Adjust to split udev rules and clean up a little.
 2018-10-26 02:30:52 +02:00
Tobias Geerinckx-Rice
0e8e29088f
gnu: dnsmasq: Update to 2.80 [security fixes]. 
* gnu/packages/dns.scm (dnsmasq): Update to 2.80.
 2018-10-26 02:30:52 +02:00
Tobias Geerinckx-Rice
e81ddedaef
gnu: tinc: Use HTTPS for sources and home page. 
* gnu/packages/vpn.scm (tinc)[source, home-page]: Use HTTPS.
 2018-10-26 02:30:51 +02:00
Leo Famulari
dea0178fb1
gnu: Mercurial: Update to 4.7.2. 
* gnu/packages/version-control.scm (mercurial): Update to 4.7.2.
 2018-10-25 20:00:27 -04:00
Meiyo Peng
84f6a9907b
gnu: Add pavucontrol-qt. 
* gnu/packages/lxqt.scm (pavucontrol-qt): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2018-10-25 21:38:57 +08:00
Meiyo Peng
8b1d43a755
gnu: Add lxqt-themes. 
* gnu/packages/lxqt.scm (lxqt-themes): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2018-10-25 21:34:55 +08:00
Meiyo Peng
5663b5b073
gnu: Add lxqt-qtplugin. 
* gnu/packages/lxqt.scm (lxqt-qtplugin): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2018-10-25 21:25:54 +08:00
Meiyo Peng
643961bbc6
gnu: Add lxqt-powermanagement. 
* gnu/packages/lxqt.scm (lxqt-powermanagement): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2018-10-25 21:21:26 +08:00
Meiyo Peng
ca302c3e8c
gnu: Add lxqt-openssh-askpass. 
* gnu/packages/lxqt.scm (lxqt-openssh-askpass): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2018-10-25 21:17:16 +08:00
Meiyo Peng
bf0da63aae
gnu: Add lxqt-policykit. 
* gnu/packages/lxqt.scm (lxqt-policykit): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2018-10-25 21:12:19 +08:00
Meiyo Peng
a98000a462
gnu: Add lxqt-notificationd. 
* gnu/packages/lxqt.scm (lxqt-notificationd): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2018-10-25 21:12:19 +08:00
Meiyo Peng
f2b48558df
gnu: lxqt.scm: Move qttools from inputs to native-inputs. 
* gnu/packages/lxqt.scm: Move qttools from inputs to native-inputs.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2018-10-25 21:12:13 +08:00
Meiyo Peng
35bfe41a01
gnu: Add lxqt-config. 
* gnu/packages/lxqt.scm (lxqt-config): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2018-10-25 19:16:18 +08:00
Ricardo Wurmus
7b63047c94
gnu: Add r-sjplot. 
* gnu/packages/cran.scm (r-sjplot): New variable.
 2018-10-25 05:17:42 +02:00
Ricardo Wurmus
489a6178e6
gnu: Add r-ggeffects. 
* gnu/packages/cran.scm (r-ggeffects): New variable.
 2018-10-25 05:17:42 +02:00
Ricardo Wurmus
413944234c
gnu: Add r-glmmtmb. 
* gnu/packages/cran.scm (r-glmmtmb): New variable.
 2018-10-25 05:17:42 +02:00
Ricardo Wurmus
aa4bde0b3a
gnu: Add r-sjstats. 
* gnu/packages/cran.scm (r-sjstats): New variable.
 2018-10-25 05:17:42 +02:00
Ricardo Wurmus
3b8a3f5548
gnu: Add r-tmb. 
* gnu/packages/cran.scm (r-tmb): New variable.
 2018-10-25 05:17:42 +02:00
Ricardo Wurmus
9b3ecb60e2
gnu: Add r-bayesplot. 
* gnu/packages/cran.scm (r-bayesplot): New variable.
 2018-10-25 05:17:42 +02:00
Ricardo Wurmus
bd531e83d1
gnu: Add r-coin. 
* gnu/packages/cran.scm (r-coin): New variable.
 2018-10-25 05:17:42 +02:00
Ricardo Wurmus
63fcb88a50
gnu: Add r-pwr. 
* gnu/packages/cran.scm (r-pwr): New variable.
 2018-10-25 05:17:42 +02:00
Ricardo Wurmus
55a08dceb5
gnu: Add r-emmeans. 
* gnu/packages/cran.scm (r-emmeans): New variable.
 2018-10-25 05:17:42 +02:00
Ricardo Wurmus
7753b54366
gnu: Add r-multcomp. 
* gnu/packages/cran.scm (r-multcomp): New variable.
 2018-10-25 05:17:42 +02:00
Ricardo Wurmus
6ce07cf99d
gnu: Add r-th-data. 
* gnu/packages/cran.scm (r-th-data): New variable.
 2018-10-25 05:17:42 +02:00
Ricardo Wurmus
302db58552
gnu: Add r-sandwich. 
* gnu/packages/cran.scm (r-sandwich): New variable.
 2018-10-25 05:17:42 +02:00
Ricardo Wurmus
69bb2d9966
gnu: r-sjmisc: Update to 2.7.5. 
* gnu/packages/cran.scm (r-sjmisc): Update to 2.7.5.
 2018-10-25 05:17:42 +02:00
Ricardo Wurmus
9bf745c931
gnu: r-sjlabelled: Update to 1.0.14. 
* gnu/packages/cran.scm (r-sjlabelled): Update to 1.0.14.
 2018-10-25 05:17:42 +02:00
Tobias Geerinckx-Rice
9ac59ad30a
gnu: sfml: Update to 2.5.1. 
* gnu/packages/game-development.scm (sfml): Update to 2.5.1.
 2018-10-25 04:59:33 +02:00
Tobias Geerinckx-Rice
95f6adae34
gnu: sfml: Don't use unstable tarball. 
* gnu/packages/game-development.scm (sfml)[source]: Use GIT-FETCH and
GIT-FILE-NAME.
 2018-10-25 04:59:32 +02:00
Tobias Geerinckx-Rice
b865e7c254
gnu: cdogs-sdl: Update to 0.6.8. 
* gnu/packages/games.scm (cdogs-sdl): Update to 0.6.8.
 2018-10-25 04:59:29 +02:00
Ricardo Wurmus
e2ec95c4eb
gnu: Add pdfpc. 
* gnu/packages/pdf.scm (pdfpc): New variable.
 2018-10-25 01:08:09 +02:00
Tobias Geerinckx-Rice
f65fdd95df
gnu: Add hangups. 
* gnu/packages/messaging.scm (hangups): New public variable.
 2018-10-24 21:34:22 +02:00
Tobias Geerinckx-Rice
56a5ef4cb2
gnu: Add python-mechanicalsoup. 
* gnu/packages/python-web.scm (python-mechanicalsoup)
(python2-mechanicalsoup): New public variable.
 2018-10-24 21:34:22 +02:00
Tobias Geerinckx-Rice
11d99192c7
gnu: Add python-reparser. 
* gnu/packages/python.scm (python-reparser, python2-reparser):
New public variable.
 2018-10-24 21:34:21 +02:00
Tobias Geerinckx-Rice
d4eb8a21a6
gnu: Add python-readlike. 
* gnu/packages/python.scm (python-readlike, python2-readlike):
New public variables.
 2018-10-24 21:34:21 +02:00
Tobias Geerinckx-Rice
5b59c77585
gnu: minixml: Update to 2.12. 
* gnu/packages/xml.scm (minixml): Update to 2.12.
[arguments]: Add the resulting libraries to the build's RUNPATH.
 2018-10-24 21:34:21 +02:00
Tobias Geerinckx-Rice
ac9f481979
gnu: iproute2: Update to 4.19.0. 
* gnu/packages/linux.scm (iproute): Update to 4.19.0.
 2018-10-24 21:34:20 +02:00
Tobias Geerinckx-Rice
f437e39aa2
gnu: loksh: Use PREFIX. 
* gnu/packages/shells.scm (loksh)[argumentss]: Substitute PREFIX for
DESTDIR #:make-flags.
 2018-10-24 21:34:20 +02:00
Meiyo Peng
c1144c78ad
gnu: Add libkscreen. 
* gnu/packages/kde.scm (libkscreen): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2018-10-24 22:37:24 +08:00
Meiyo Peng
a6b941ddd1
gnu: lxqt.scm: Add prefix to licenses imports. 
* gnu/packages/lxqt.scm: Import (guix licenses) with prefix "license:".

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2018-10-24 22:37:24 +08:00
Meiyo Peng
34e08de321
gnu: Add lxqt-admin. 
* gnu/packages/lxqt.scm (lxqt-admin): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2018-10-24 22:37:24 +08:00
Meiyo Peng
2bdab26f06
gnu: Add lxqt-about. 
* gnu/packages/lxqt.scm (lxqt-about): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2018-10-24 22:37:24 +08:00
Meiyo Peng
d6fd4a76eb
gnu: Add pcmanfm-qt. 
* gnu/packages/lxqt.scm (pcmanfm-qt): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2018-10-24 22:37:24 +08:00
Meiyo Peng
79f9e4e0b5
gnu: Add libfm-qt. 
* gnu/packages/lxqt.scm (libfm-qt): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2018-10-24 22:37:24 +08:00
Meiyo Peng
dbb4f7d0a6
gnu: Add lxqt-sudo. 
* gnu/packages/lxqt.scm (lxqt-sudo): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2018-10-24 22:37:24 +08:00
Meiyo Peng
cc7f417572
gnu: Add lxqt-runner. 
* gnu/packages/lxqt.scm (lxqt-runner): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2018-10-24 22:37:24 +08:00
Meiyo Peng
af291d1cdf
gnu: Add lxqt-panel. 
* gnu/packages/lxqt.scm (lxqt-panel): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2018-10-24 22:37:24 +08:00
Meiyo Peng
fbe645eafa
gnu: Add libsysstat. 
* gnu/packages/lxqt.scm (libsysstat): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2018-10-24 22:37:24 +08:00
Meiyo Peng
fab3484657
gnu: Add lxqt-globalkeys. 
* gnu/packages/lxqt.scm (lxqt-globalkeys): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2018-10-24 22:37:24 +08:00
Pierre Neidhardt
96b4977a19
gnu: Add gx-go. 
* gnu/packages/ipfs.scm (gx-go): New variable.
 2018-10-24 14:41:44 +02:00
Pierre Neidhardt
e82ae67302
gnu: Add go-github-com-whyrusleeping-gx-util. 
* gnu/packages/ipfs.scm (go-github-com-whyrusleeping-gx-util): New variable.
 2018-10-24 14:41:44 +02:00
Pierre Neidhardt
5b6c3ad0cd
gnu: Add go-github-com-kr-fs. 
* gnu/packages/golang.scm (go-github-com-kr-fs): New variable.
 2018-10-24 14:41:44 +02:00
Efraim Flashner
96bdf904ac
gnu: dotherside: Update home-page. 
* gnu/packages/qt.scm (dotherside)[home-page]: Fix project's home-page.
 2018-10-24 14:17:53 +03:00
Pierre Neidhardt
202c1b9703
gnu: Add gx. 
* gnu/packages/ipfs.scm (gx): New variable.
 2018-10-24 12:27:59 +02:00
Pierre Neidhardt
566f13f845
gnu: Add go-github-com-ipfs-go-ipfs-api. 
* gnu/packages/ipfs.scm (go-github-com-ipfs-go-ipfs-api): New variable.
 2018-10-24 12:27:59 +02:00
Pierre Neidhardt
247b1bd2b6
gnu: Add go-github-com-ipfs-go-ipfs-cmdkit-files. 
* gnu/packages/ipfs.scm (go-github-com-ipfs-go-ipfs-cmdkit-files): New variable.
 2018-10-24 12:27:59 +02:00
Pierre Neidhardt
56eb7bd33c
gnu: Add go-github-com-whyrusleeping-stump. 
* gnu/packages/golang.scm (go-github-com-whyrusleeping-stump): New variable.
 2018-10-24 12:13:50 +02:00
Pierre Neidhardt
38566e975e
gnu: Add go-github-com-whyrusleeping-progmeter. 
* gnu/packages/golang.scm (go-github-com-whyrusleeping-progmeter): New variable.
 2018-10-24 12:13:50 +02:00
Pierre Neidhardt
7bd9020e48
gnu: Add go-github-com-whyrusleeping-json-filter. 
* gnu/packages/golang.scm (go-github-com-whyrusleeping-json-filter): New variable.
 2018-10-24 12:13:50 +02:00
Pierre Neidhardt
b5bb0b500b
gnu: Add go-github-com-urfave-cli. 
* gnu/packages/golang.scm (go-github-com-urfave-cli): New variable.
 2018-10-24 12:13:50 +02:00
Pierre Neidhardt
20f48e4b5d
gnu: Add go-github-com-sabhiram-go-gitignore. 
* gnu/packages/golang.scm (go-github-com-sabhiram-go-gitignore): New variable.
 2018-10-24 12:13:50 +02:00
Pierre Neidhardt
ad8d463740
gnu: Add go-github-com-cheekybits-is. 
* gnu/packages/golang.scm (go-github-com-cheekybits-is): New variable.
 2018-10-24 12:13:50 +02:00
Pierre Neidhardt
38d346dcc6
gnu: Add go-github-com-whyrusleeping-tar-utils. 
* gnu/packages/golang.scm (go-github-com-whyrusleeping-tar-utils): New variable.
 2018-10-24 12:13:50 +02:00
Pierre Neidhardt
66fb6e292a
gnu: Add go-github-com-multiformats-go-multiaddr-net. 
* gnu/packages/golang.scm (go-github-com-multiformats-go-multiaddr-net): New variable.
 2018-10-24 12:13:49 +02:00
Pierre Neidhardt
e53121b36f
gnu: Add go-github-com-multiformats-go-multiaddr. 
* gnu/packages/golang.scm (go-github-com-multiformats-go-multiaddr): New variable.
 2018-10-24 12:13:49 +02:00
Pierre Neidhardt
8cb9128173
gnu: Add go-github-com-mitchellh-go-homedir. 
* gnu/packages/golang.scm (go-github-com-mitchellh-go-homedir): New variable.
 2018-10-24 12:13:49 +02:00
Pierre Neidhardt
77d8a91792
gnu: Add go-github-com-libp2p-go-libp2p-metrics. 
* gnu/packages/golang.scm (go-github-com-libp2p-go-libp2p-metrics): New variable.
 2018-10-24 12:13:49 +02:00
Pierre Neidhardt
43a5c17737
gnu: Add go-github-com-libp2p-go-libp2p-protocol. 
* gnu/packages/golang.scm (go-github-com-libp2p-go-libp2p-protocol): New variable.
 2018-10-24 12:13:49 +02:00
Pierre Neidhardt
1db1e3c79e
gnu: Add go-github-com-libp2p-go-libp2p-peer. 
* gnu/packages/golang.scm (go-github-com-libp2p-go-libp2p-peer): New variable.
 2018-10-24 12:13:49 +02:00
Pierre Neidhardt
2e42e587b4
gnu: Add go-github-com-multiformats-go-multihash. 
* gnu/packages/golang.scm (go-github-com-multiformats-go-multihash): New variable.
 2018-10-24 12:13:49 +02:00
Pierre Neidhardt
9a7f157571
gnu: Add go-github-com-spaolacci-murmur3. 
* gnu/packages/golang.scm (go-github-com-spaolacci-murmur3): New variable.
 2018-10-24 12:13:49 +02:00
Pierre Neidhardt
90f2a84805
gnu: Add go-github-com-minio-blake2b-simd. 
* gnu/packages/golang.scm (go-github-com-minio-blake2b-simd): New variable.
 2018-10-24 12:13:49 +02:00
Pierre Neidhardt
27d59d8bf5
gnu: Add go-github-com-gxed-hashland-keccakpg. 
* gnu/packages/golang.scm (go-github-com-gxed-hashland-keccakpg): New variable.
 2018-10-24 12:13:49 +02:00
Pierre Neidhardt
15272a5053
gnu: Add go-github-com-mr-tron-base58. 
* gnu/packages/golang.scm (go-github-com-mr-tron-base58): New variable.
 2018-10-24 12:13:49 +02:00
Pierre Neidhardt
71f3680499
gnu: Add go-github-com-libp2p-go-libp2p-crypto. 
* gnu/packages/golang.scm (go-github-com-libp2p-go-libp2p-crypto): New variable.
 2018-10-24 12:13:49 +02:00
Pierre Neidhardt
ff2d11c3ce
gnu: Add go-github-com-minio-sha256-simd. 
* gnu/packages/golang.scm (go-github-com-minio-sha256-simd): New variable.
 2018-10-24 12:13:49 +02:00
Pierre Neidhardt
d5599afadf
gnu: Add go-github-com-btcsuite-btcd-btcec. 
* gnu/packages/golang.scm (go-github-com-btcsuite-btcd-btcec): New variable.
 2018-10-24 12:13:48 +02:00
Pierre Neidhardt
171c3259fc
gnu: Add go-github-com-btcsuite-btclog. 
* gnu/packages/golang.scm (go-github-com-btcsuite-btclog): New variable.
 2018-10-24 12:13:48 +02:00
Pierre Neidhardt
6a95e3a3a4
gnu: Add go-github-com-davecgh-go-spew. 
* gnu/packages/golang.scm (go-github-com-davecgh-go-spew): New variable.
 2018-10-24 12:13:48 +02:00
Pierre Neidhardt
386bd7ba39
gnu: Add go-github-com-libp2p-go-flow-metrics. 
* gnu/packages/golang.scm (go-github-com-libp2p-go-flow-metrics): New variable.
 2018-10-24 12:13:22 +02:00
Pierre Neidhardt
48a279ee14
gnu: go-golang-org-x-crypto-union: Wrap all crypto packages. 
* gnu/packages/golang.scm (go-golang-org-x-crypto-union): Include
go-golang-org-x-crypto-ed25519, go-golang-org-x-crypto-ripemd160,
go-golang-org-x-crypto-blake2s, go-golang-org-x-crypto-sha3 in union.
 2018-10-24 12:13:22 +02:00
Pierre Neidhardt
19789c8b91
gnu: Add go-golang-org-x-crypto-sha3. 
* gnu/packages/golang.scm (go-golang-org-x-crypto-sha3): New variable.
 2018-10-24 12:13:22 +02:00
Pierre Neidhardt
6fa257cca7
gnu: Add go-golang-org-x-crypto-blake2s. 
* gnu/packages/golang.scm (go-golang-org-x-crypto-blake2s): New variable.
 2018-10-24 12:13:22 +02:00
Pierre Neidhardt
a9010ead4c
gnu: Add go-golang-org-x-crypto-ripemd160. 
* gnu/packages/golang.scm (go-golang-org-x-crypto-ripemd160): New variable.
 2018-10-24 12:13:21 +02:00
Pierre Neidhardt
7eb0ad380b
gnu: Add go-golang-org-x-crypto-ed25519. 
* gnu/packages/golang.scm (go-golang-org-x-crypto-ed25519): New variable.
 2018-10-24 12:13:21 +02:00
Pierre Neidhardt
830dc25176
gnu: Move go-golang-org-x-crypto-union from syncthing.scm to golang.scm 
* gnu/packages/syncthing.scm (go-golang-org-x-crypto-union): Delete.
* gnu/packages/golang.scm (go-golang-org-x-crypto-union): Add.
 2018-10-24 12:13:21 +02:00
Pierre Neidhardt
5787e15230
gnu: Move go-github-com-gogo-protobuf* from syncthing.scm to golang.scm 
* gnu/packages/syncthing.scm (go-github-com-gogo-protobuf,
  go-github-com-gogo-protobuf-protoc-gen-gogo,
  go-github-com-gogo-protobuf-union): Delete.

* gnu/packages/golang.scm (go-github-com-gogo-protobuf,
  go-github-com-gogo-protobuf-protoc-gen-gogo,
  go-github-com-gogo-protobuf-union): Add.
 2018-10-24 10:46:05 +02:00
Tobias Geerinckx-Rice
569adffe4b
gnu: pcsc-lite: Update to 1.8.24. 
* gnu/packages/security-token.scm (pcsc-lite): Update to 1.8.24.
 2018-10-24 05:59:36 +02:00
Tobias Geerinckx-Rice
716cd19ad2
gnu: loksh: Update to 6.4. 
* gnu/packages/shells.scm (loksh): Update to 6.4.
[inputs]: Add ncurses.
 2018-10-24 05:59:36 +02:00
Tobias Geerinckx-Rice
e5d757709a
gnu: loksh: Don't use unstable tarball. 
* gnu/packages/shells.scm (loksh)[source]: Use GIT-FETCH and GIT-FILE-NAME.
 2018-10-24 05:59:35 +02:00
Tobias Geerinckx-Rice
d0d3ed6dfc
gnu: tinc: Update to 1.0.35 [fixes CVE-2018-{16737,16738,16758}]. 
* gnu/packages/vpn.scm (tinc): Update to 1.0.35.
 2018-10-24 05:59:35 +02:00
Mark H Weaver
ce7ceef37f
gnu: linux-libre: Update to 4.19. 
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.19.
(%linux-libre-hash): Update hash.
(%linux-libre-4.18-patches): Rename to ...
(%linux-libre-4.19-patches): ... this, and remove a patch that is
no longer needed.
(linux-libre, linux-libre-arm-generic, linux-libre-arm-omap2plus):
Use %linux-libre-4.19-patches instead of %linux-libre-4.18-patches.
* gnu/packages/aux-files/linux-libre/4.18-arm.conf,
gnu/packages/aux-files/linux-libre/4.18-arm64.conf,
gnu/packages/aux-files/linux-libre/4.18-i686.conf,
gnu/packages/aux-files/linux-libre/4.18-x86_64.conf: Remove files.
* gnu/packages/aux-files/linux-libre/4.19-arm.conf,
gnu/packages/aux-files/linux-libre/4.19-arm64.conf,
gnu/packages/aux-files/linux-libre/4.19-i686.conf,
gnu/packages/aux-files/linux-libre/4.19-x86_64.conf: New files.
* Makefile.am (AUX_FILES): Adjust accordingly.
 2018-10-23 22:57:14 -04:00
Tobias Geerinckx-Rice
d9bcdfce29
gnu: mongodb: Use INVOKE. 
* gnu/packages/databases.scm (mongodb)[arguments]: Substitute INVOKE for
SYSTEM*.
 2018-10-24 04:56:23 +02:00
Tobias Geerinckx-Rice
94617bddb0
gnu: libbytesize: Update to 1.4. 
* gnu/packages/c.scm (libbytesize): Update to 1.4.
[source]: Parametrise.
 2018-10-24 04:56:23 +02:00
Tobias Geerinckx-Rice
50f5aa4b9e
gnu: xmlsec: Update to 1.2.27. 
* gnu/packages/xml.scm (xmlsec): Update to 1.2.27.
[source]: Don't rely on NAME.
 2018-10-24 04:56:23 +02:00
Tobias Geerinckx-Rice
0ba0ab814a
gnu: Add wavemon. 
* gnu/packages/hardware.scm (wavemon): New public variable.
 2018-10-24 03:58:20 +02:00
Mark H Weaver
d78587edca
gnu: icecat: Add fixes from mozilla-esr60 [security fixes]. 
Includes fixes for CVE-2018-12389, CVE-2018-12390, CVE-2018-12391,
CVE-2018-12392, CVE-2018-12393, CVE-2018-12395, CVE-2018-12396, and
CVE-2018-12397.

* gnu/packages/gnuzilla.scm (icecat)[source]: Add selected changesets from the
upstream mozilla-esr60 repository.  Relabel some previously existing patches
to reflect CVE assignments.
 2018-10-23 19:41:47 -04:00
Brett Gilio
b4237a6ec0
gnu: emacs-nov-el: Update to 0.2.6. 
* gnu/packages/emacs.scm (emacs-nov-el): Update to 0.2.6.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-10-23 23:58:39 +02:00
Leo Famulari
12995856e2
gnu: libssh: Fetch the source code more efficiently. 
* gnu/packages/ssh.scm (libssh)[source]: Use the git:// protocol.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-10-23 23:58:39 +02:00
Laura Lazzati
b55697fbb4
gnu: Add r-aspi. 
* gnu/packages/cran.scm (r-aspi): New variable.

Signed-off-by: Gábor Boskovits <boskovits@gmail.com>
 2018-10-23 23:20:13 +02:00
Pierre Neidhardt
d89872f955
gnu: sbcl-parse-float: Remove comment about license. 
* gnu/packages/lisp.scm (sbcl-parse-float): The license really is public domain.
 2018-10-23 20:36:58 +02:00
Meiyo Peng
bf076d8ba6
gnu: Add libstatgrab. 
* gnu/packages/lxqt.scm (libstatgrab): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2018-10-23 22:39:09 +08:00
Meiyo Peng
64fac507dd
gnu: Add libdbusmenu-qt. 
* gnu/packages/lxqt.scm (libdbusmenu-qt): New variable.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2018-10-23 22:23:49 +08:00
Meiyo Peng
d58aefdf06
gnu: lxqt.scm: Sort packages alphabetically. 
* gnu/packages/lxqt.scm: Sort packages alphabetically.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2018-10-23 21:37:48 +08:00
Meiyo Peng
088096aa0e
gnu: lxqt-build-tools: Update download URL and home page URL. 
* gnu/packages/lxqt.scm (lxqt-build-tools)
[source]: Update download URL to the 'lxqt' repository.
[home-page]: Use HTTPS.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2018-10-23 21:33:45 +08:00
Meiyo Peng
70c488f8dd
gnu: lxqt-session: Update to 0.13.0. 
* gnu/packages/lxqt.scm (lxqt-session): Update to 0.13.0.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2018-10-23 21:29:55 +08:00
Nicolas Goaziou
f0ac761f95
gnu: grammalecte: Update home page. 
* gnu/packages/dictionaries.scm (grammalecte)[home-page]: Update URL.
 2018-10-23 09:59:16 +02:00
Leo Famulari
a89f731b15
gnu: Xiph: Use HTTPS URLs. 
* gnu/packages/xiph.scm (libogg, libvorbis, libtheora, speex, speexdsp, ao,
flac, libkate, vorbis-tools, opus-tools opusfile, icecast, libshout)[source]:
Use HTTPS URLs.
(icecast)[home-page]: Use HTTPS URL.
 2018-10-23 00:18:17 -04:00
Leo Famulari
a640492f6d
gnu: Opus: Update to 1.3. 
* gnu/packages/xiph.scm (opus): Update to 1.3.
 2018-10-23 00:18:17 -04:00
Leo Famulari
d0ff383ed8
gnu: opus-tools: Update to 0.2. 
* gnu/packages/xiph.scm (opus-tools): Update to 0.2.
[native-inputs]: Add pkg-config.
[inputs]: Add libopusenc and opusfile. Remove libogg and opus.
 2018-10-23 00:18:17 -04:00
Leo Famulari
844b3272da
gnu: opusfile: Propagate dependencies required in pkg-config. 
* gnu/packages/xiph.scm (opusfile)[inputs]: Move libogg and openssl to
propagated-inputs.
 2018-10-23 00:18:17 -04:00
Leo Famulari
ce08d54c35
gnu: Add libopusenc. 
* gnu/packages/xiph.scm (libopusenc): New variable.
 2018-10-23 00:18:13 -04:00
Tobias Geerinckx-Rice
d6a9c4ecfb
gnu: unbound: Update to 1.8.1. 
* gnu/packages/dns.scm (unbound): Update to 1.8.1.
 2018-10-23 04:18:50 +02:00
Tobias Geerinckx-Rice
661da25133
gnu: Remove duplicate import from (gnu packages messaging). 
* gnu/packages/messaging.scm (define-module): Remove duplicate module
import.  Order the remainder alphabetically.
 2018-10-23 04:18:40 +02:00
Tobias Geerinckx-Rice
ee5c83533d
gnu: cppcheck: Update to 1.85. 
* gnu/packages/check.scm (cppcheck): Update to 1.85.
 2018-10-23 03:14:31 +02:00
Tobias Geerinckx-Rice
3891c38346
gnu: bs1770gain: Update to 0.5.1. 
* gnu/packages/audio.scm (bs1770gain): Update to 0.5.1.
 2018-10-23 03:14:30 +02:00
Tobias Geerinckx-Rice
2820e31590
gnu: zstd: Update to 1.3.7. 
* gnu/packages/compression.scm (zstd): Update to 1.3.7.
 2018-10-23 03:14:30 +02:00
Marius Bakke
63abd1e2a3
gnu: python-pymongo: Update to 3.7.2. 
* gnu/packages/python.scm (python-pymongo): Update to 3.7.2.
 2018-10-22 23:01:19 +02:00
Marius Bakke
47d7c10387
gnu: python-sure: Update to 1.4.11. 
* gnu/packages/python.scm (python-sure): Update to 1.4.11.
 2018-10-22 23:01:19 +02:00
Marius Bakke
9b9aaa57e3
gnu: python-markdown: Update to 3.0.1. 
* gnu/packages/python.scm (python-markdown): Update to 3.0.1.
[arguments]: Remove.
 2018-10-22 23:01:19 +02:00
Marius Bakke
1b50df7d5b
gnu: python-markdown: Update home page. 
* gnu/packages/python.scm (python-markdown)[home-page]: Change to current.
 2018-10-22 23:01:19 +02:00
Marius Bakke
cb61baf0e7
gnu: python-m2crypto: Update to 0.30.1. 
* gnu/packages/python-crypto.scm (python-m2crypto): Update to 0.30.1.
 2018-10-22 23:01:19 +02:00
Marius Bakke
e810de3e68
gnu: python-m2crypto: python-typing is only needed for python2. 
* gnu/packages/python-crypto.scm (python-m2crypto)[propagated-inputs]: Remove.
[properties]: New field.
(python2-m2crypto)[propagated-inputs]: Add PYTHON2-TYPING.
 2018-10-22 23:01:19 +02:00
Marius Bakke
90fb136ff7
gnu: xorg-server: Update to 1.20.2. 
* gnu/packages/xorg.scm (xorg-server): Update to 1.20.2.
 2018-10-22 23:01:19 +02:00
Marius Bakke
4350cacdf7
gnu: xf86-input-libinput: Update to 0.28.1. 
* gnu/packages/xorg.scm (xf86-input-libinput): Update to 0.28.1.
 2018-10-22 23:01:18 +02:00
Marius Bakke
3743e117a6
gnu: libmd: Update to 1.0.1. 
* gnu/packages/crypto.scm (libmd): Update to 1.0.1.
 2018-10-22 23:01:18 +02:00
Marius Bakke
f38eedd518
gnu: samba: Update to 4.8.6. 
* gnu/packages/samba.scm (samba): Update to 4.8.6.
 2018-10-22 23:01:18 +02:00
Marius Bakke
3ad0a35890
gnu: Add GN. 
* gnu/packages/build-tools.scm (gn): New public variable.
 2018-10-22 23:01:18 +02:00
Marius Bakke
f232c875d2
gnu: python-lazy-object-proxy: Update to 1.3.1. 
* gnu/packages/python.scm (python-lazy-object-proxy): Update to 1.3.1.
 2018-10-22 23:01:18 +02:00
Marius Bakke
b45688313b
gnu: python-mistune: Update to 0.8.4. 
* gnu/packages/python.scm (python-mistune): Update to 0.8.4.
 2018-10-22 23:01:18 +02:00
Meiyo Peng
9861bcd182
gnu: liblxqt: Update to 0.13.0. 
* gnu/packages/lxqt.scm (liblxqt): Update to 0.13.0.
[source]: Remove patches.
[home-page]: Use HTTPS.
* gnu/packages/patches/liblxqt-include.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2018-10-22 22:09:51 +08:00
Meiyo Peng
50401c2a68
gnu: libqtxdg: Update to 3.2.0. 
* gnu/packages/lxqt.scm (libqtxdg): Update to 3.2.0.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2018-10-22 22:09:51 +08:00
Christopher Lemmer Webber
51f4e36cb9
gnu: Add emacs-scribble-mode. 
* gnu/packages/emacs.scm (emacs-scribble-mode): New variable.
 2018-10-22 09:59:42 -04:00
Nicolas Goaziou
3a352a4405
gnu: snap: Update to 4.2.2.2. 
* gnu/packages/education.scm (snap): Update to 4.2.2.2.  Update source URL.
 2018-10-22 15:56:38 +02:00
Ricardo Wurmus
09aa3d063a
gnu: Add r-ruvseq. 
* gnu/packages/bioconductor.scm (r-ruvseq): New variable.
 2018-10-22 13:00:24 +02:00
Leo Famulari
318ec0a896
gnu: livemedia-utils: Update to 2018.10.17 [fixes CVE-2018-4013]. 
* gnu/packages/video.scm (livemedia-utils): Update to 2018.10.17.
 2018-10-22 03:37:53 -04:00
Leo Famulari
69c69c2d8e
gnu: libmpdclient: Update to 2.16. 
* gnu/packages/mpd.scm (libmpdclient): Update to 2.16.
 2018-10-21 23:55:28 -04:00
Tobias Geerinckx-Rice
dc3dfa131f
gnu: knot: Update to 2.7.3. 
* gnu/packages/dns.scm (knot): Update to 2.7.3.
 2018-10-22 00:40:05 +02:00
Leo Famulari
df71447e99
gnu: OpenSSH: Update to 7.9p1. 
* gnu/packages/ssh.scm (openssh): Update to 7.9p1.
 2018-10-21 18:33:58 -04:00
Pierre Langlois
ff598353c0
gnu: light: Update to 1.2. 
* gnu/packages/linux.scm (light): Update to 1.2.
[source]: Switch to url-fetch.
[arguments]: Remove.
[native-inputs]: Remove help2man. Add autoconf and automake.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-10-21 23:54:46 +02:00
Luther Thompson
16d212510a
gnu: Add python-ilinkedlist. 
* gnu/packages/python.scm (python-ilinkedlist): New variable.
 2018-10-21 23:54:46 +02:00
Ludovic Courtès
aff38cb199
install: Make /var/guix/…/guix-profile a relative symlink. 
* gnu/build/install.scm (populate-single-profile-directory): Make
/var/guix/profiles/per-user/root/guix-profile a relative symlink.
 2018-10-21 23:54:46 +02:00
Ricardo Wurmus
f8ee22fc8b
gnu: flexbar: Update to 3.4.0. 
* gnu/packages/bioinformatics.scm (flexbar): Update to 3.4.0.
[source]: Fetch from git.
[arguments]: Adjust check and install phases.
[home-page]: Update to new home at Github.
[license]: Change to bsd-3.
 2018-10-21 23:06:47 +02:00
Ricardo Wurmus
4d93a9a36c
gnu: seqan: Update to 2.4.0. 
* gnu/packages/bioinformatics.scm (seqan): Update to 2.4.0.
[native-inputs]: Replace bzip2 with xz.
(seqan-1): New variable.
(tophat)[inputs]: Use seqan-1.
 2018-10-21 23:06:47 +02:00
Ricardo Wurmus
4b8f4536ce
gnu: khmer: Update to 2.1.2. 
* gnu/packages/bioinformatics.scm (khmer): Update to 2.1.2.
[source]: Fetch from git; remove bundled libraries in snippet.
[arguments]: Remove "set-paths" phase; remove "post-install-check" phase;
remove "reset-gzip-timestamps" phase.
[native-inputs]: Remove seqan and python-nose; add python-cython,
python-pytest, and python-pytest-runner.
[inputs]: Remove gcc-4.9.
 2018-10-21 23:06:47 +02:00
Ricardo Wurmus
50e33c3a8c
gnu: python-screed: Update to 1.0. 
* gnu/packages/bioinformatics.scm (python-screed): Update to 1.0.
[arguments]: Run tests after installation.
[native-inputs]: Add python-pytest, python-pytest-cov, and
python-pytest-runner; remove python-nose.
 2018-10-21 23:06:47 +02:00
Ricardo Wurmus
0db75f7a79
gnu: fasttree: Use INVOKE. 
* gnu/packages/bioinformatics.scm (fasttree)[arguments]: Use INVOKE; simplify
install phase.
 2018-10-21 23:06:46 +02:00
Ricardo Wurmus
38622ccd14
gnu: express-beta-diversity: Update to 1.0.8. 
* gnu/packages/bioinformatics.scm (express-beta-diversity): Update to 1.0.8.
[source]: Fetch from git.
[arguments]: Use INVOKE; remove "exit-source" build phase; simplify.
 2018-10-21 23:06:46 +02:00
Ricardo Wurmus
c96ca68f31
gnu: edirect: Update to 10.2.20181018. 
* gnu/packages/bioinformatics.scm (edirect): Update to 10.2.20181018.
[arguments]: Add simple check phase; simplify other phases.
[inputs]: Add perl-xml-simple.
 2018-10-21 23:06:46 +02:00
Ricardo Wurmus
949fa34b84
gnu: eigensoft: Update to 7.2.1. 
* gnu/packages/bioinformatics.scm (eigensoft): Update to 7.2.1.
[arguments]: Remove Makefile modification.
 2018-10-21 23:06:46 +02:00
Ricardo Wurmus
5748fe5fcc
gnu: discrover: Fetch from git. 
* gnu/packages/bioinformatics.scm (discrover)[source]: Fetch from git.
 2018-10-21 23:06:46 +02:00
Ricardo Wurmus
4348a059e5
gnu: Add texlive-latex-examplep. 
* gnu/packages/tex.scm (texlive-latex-examplep): New variable.
 2018-10-21 23:06:46 +02:00
Ricardo Wurmus
f50f343e0d
gnu: Add texlive-latex-verbatimbox. 
* gnu/packages/tex.scm (texlive-latex-verbatimbox): New variable.
 2018-10-21 23:06:46 +02:00
Ricardo Wurmus
1d0669f4b4
gnu: Add texlive-latex-readarray. 
* gnu/packages/tex.scm (texlive-latex-readarray): New variable.
 2018-10-21 23:06:46 +02:00
Ricardo Wurmus
893fbf1285
gnu: Add texlive-generic-listofitems. 
* gnu/packages/tex.scm (texlive-generic-listofitems): New variable.
 2018-10-21 23:06:46 +02:00
Ricardo Wurmus
49b2e86adf
gnu: Add texlive-latex-doi. 
* gnu/packages/tex.scm (texlive-latex-doi): New variable.
 2018-10-21 23:06:46 +02:00
Ricardo Wurmus
1c06399358
gnu: diamond: Fetch from git. 
* gnu/packages/bioinformatics.scm (diamond)[source]: Fetch from git.
 2018-10-21 23:06:46 +02:00
Ricardo Wurmus
7a1e62ca67
gnu: delly: Update to 0.7.9. 
* gnu/packages/bioinformatics.scm (delly): Update to 0.7.9.
[source]: Fetch from git.
[arguments]: Add phase install-templates; use default install phase.
[native-inputs]: Remove python-2.
[home-page]: Use new home page.
* gnu/packages/patches/delly-use-system-libraries.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove patch.
 2018-10-21 23:06:46 +02:00
Ricardo Wurmus
4d494a4fa3
gnu: deeptools: Update to 3.1.3. 
* gnu/packages/bioinformatics.scm (deeptools): Update to 3.1.3.
 2018-10-21 23:06:46 +02:00
Ricardo Wurmus
e6b65bd219
gnu: eolie: Update to 0.9.45. 
* gnu/packages/gnome.scm (eolie): Update to 0.9.45.
 2018-10-21 23:06:46 +02:00
Ricardo Wurmus
42643fc24d
gnu: python-dendropy: Fetch from git. 
* gnu/packages/bioinformatics.scm (python-dendropy)[source]: Fetch from git.
 2018-10-21 23:06:46 +02:00
Ricardo Wurmus
6b31040ae6
gnu: python-py2bit: Update to 0.3.0. 
* gnu/packages/bioinformatics.scm (python-py2bit): Update to 0.3.0.
 2018-10-21 23:06:45 +02:00
Ricardo Wurmus
6b7260bad1
gnu: cutadapt: Update to 1.18. 
* gnu/packages/bioinformatics.scm (cutadapt): Update to 1.18.
[inputs]: Add python-dnaio.
 2018-10-21 23:06:45 +02:00
Ricardo Wurmus
a5b0038cbd
gnu: Add python-dnaio. 
* gnu/packages/bioinformatics.scm (python-dnaio): New variable.
 2018-10-21 23:06:45 +02:00
Ricardo Wurmus
7321920cd3
gnu: crossmap: Update to 0.2.9. 
* gnu/packages/bioinformatics.scm (crossmap): Update to 0.2.9.
* gnu/packages/patches/crossmap-allow-system-pysam.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove patch.
 2018-10-21 23:06:45 +02:00
Ricardo Wurmus
8640f9ec91
gnu: python-twobitreader: Update to 3.1.6. 
* gnu/packages/bioinformatics.scm (python-twobitreader): Update to 3.1.6.
[source]: Fetch from git.
 2018-10-21 23:06:45 +02:00
Ricardo Wurmus
f5cec0068a
gnu: Add python-bx-python. 
* gnu/packages/bioinformatics.scm (python-bx-python): New variable.
(python2-bx-python): Define in terms of python-bx-python.
 2018-10-21 23:06:45 +02:00
Ricardo Wurmus
2ba2d62c69
gnu: python2-bx-python: Update to 0.8.2. 
* gnu/packages/bioinformatics.scm (python2-bx-python): Update to 0.8.2.
[source]: Remove obsolete snippet.
[inputs]: Move python2-numpy from here...
[propagated-inputs]: ...to here; add python2-six.
[native-inputs]: Add python2-lzo and python2-cython.
[home-page]: Update to new home at Github.
 2018-10-21 23:06:45 +02:00
Ricardo Wurmus
1d18ee6dfd
gnu: bwa-pssm: Fetch from git. 
* gnu/packages/bioinformatics.scm (bwa-pssm)[source]: Fetch from git.
 2018-10-21 23:06:45 +02:00
Ricardo Wurmus
9a6808e0c0
gnu: tophat: Update to 2.1.1. 
* gnu/packages/bioinformatics.scm (tophat): Update to 2.1.1.
* gnu/packages/patches/tophat-build-with-later-seqan.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove patch.
 2018-10-21 23:06:45 +02:00
Mark H Weaver
f7618bf18e
gnu: linux-libre: Update to 4.18.16. 
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.18.16.
(%linux-libre-hash): Update hash.
 2018-10-21 14:59:30 -04:00
Mark H Weaver
668834cae0
gnu: linux-libre@4.14: Update to 4.14.78. 
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.78.
(%linux-libre-4.14-hash): Update hash.
 2018-10-21 14:58:03 -04:00
Mark H Weaver
c4a7a51292
gnu: linux-libre@4.9: Update to 4.9.135. 
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.135.
 2018-10-21 14:57:24 -04:00
Mark H Weaver
9ab6c680ba
gnu: linux-libre@4.4: Update to 4.4.162. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.162.
 2018-10-21 14:56:44 -04:00
Pierre Neidhardt
673364cd3a
gnu: Add emacs-slime-repl-ansi-color. 
* gnu/packages/emacs.scm (emacs-slime-repl-ansi-color): New variable.
 2018-10-21 19:49:10 +02:00
Marius Bakke
3a69b59332
gnu: rng-tools: Update to 6.6. 
* gnu/packages/linux.scm (rng-tools): Update to 6.6.
 2018-10-21 17:57:01 +02:00
Marius Bakke
9b6dc31b6d
gnu: fluidsynth: Update to 2.0.1. 
* gnu/packages/audio.scm (fluidsynth): Update to 2.0.1.
(fluidsynth-1): New public variable.
* gnu/packages/games.scm (gzdoom)[inputs]: Change FLUIDSYNTH to FLUIDSYNTH-1.
* gnu/packages/music.scm (lmms)[inputs]: Likewise.
 2018-10-21 17:57:01 +02:00
Marius Bakke
b6b3e5120a
gnu: libgxps: Update to 0.3.0. 
* gnu/packages/gnome.scm (libgxps): Update to 0.3.0.
[source](patches): Remove.
[build-system]: Switch to MESON-BUILD-SYSTEM.
[inputs]: Change LIBJPEG to LIBJPEG-TURBO.
* gnu/packages/patches/libgxps-CVE-2017-11590.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
 2018-10-21 17:57:01 +02:00
Marius Bakke
c8d62d936e
gnu: libgxps: Propagate required inputs. 
* gnu/packages/gnome.scm (libgxps)[inputs]: Move CAIRO, GLIB and LIBARCHIVE ...
[propagated-inputs]: ... here.  New field.
 2018-10-21 17:57:01 +02:00
Marius Bakke
920de4286a
gnu: re2: Update to 2018-10-01. 
* gnu/packages/regex.scm (re2): Update to 2018-10-01.
 2018-10-21 17:57:01 +02:00
Marius Bakke
ab5e4be647
gnu: libgphoto2: Update to 2.5.19. 
* gnu/packages/photo.scm (libgphoto2): Update to 2.5.19.
 2018-10-21 17:57:01 +02:00
Marius Bakke
8941b4ab3d
gnu: appstream-glib: Update to 0.7.14. 
* gnu/packages/glib.scm (appstream-glib): Update to 0.7.14.
 2018-10-21 17:57:00 +02:00
Marius Bakke
8eadc55202
gnu: openal: Update to 1.19.1. 
* gnu/packages/audio.scm (openal): Update to 1.19.1.
 2018-10-21 17:57:00 +02:00
Efraim Flashner
2c17bd7b29
gnu: kodi: Disable version checker. 
Fixes bug#32997.

* gnu/packages/kodi.scm (kodi)[arguments]: Add substitution to remove
the version checking configuration option.
 2018-10-21 16:39:26 +03:00
Ben Woodcroft
617c478506
gnu: python2-dendropy: Disable failing test. 
* gnu/packages/bioinformatics.scm (python2-dendropy)[arguments]: Disable
failing test.
 2018-10-21 22:31:56 +10:00