Commit graph

1172 commits

Author SHA1 Message Date
Leo Famulari
dc5cec21f2
gnu: python@2.7: Fix getentropy() calls on kernels < 3.17.
* gnu/packages/patches/python-2.7-getentropy-on-old-kernels.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/python.scm (python-2.7)[source]: Use it.
2017-03-14 02:45:23 -04:00
Efraim Flashner
3f9543aee1
Merge remote-tracking branch 'origin/master' into core-updates 2017-03-13 23:08:49 +02:00
Leo Famulari
7cb68a3cb3
gnu: Remove python-3.4.
* gnu/packages/python.scm (python-3.4): Remove variable.
* gnu/packages/patches/python-3.4-fix-tests.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-03-13 15:33:54 -04:00
Marius Bakke
e4d34cd0f0
gnu: python@3.5: Fix getentropy() calls on kernels < 3.17.
* gnu/packages/patches/python-3.5-getentropy-on-old-kernels.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/python.scm (python-3.5, python-minimal, python-minimal-wrapper,
python-wrapper)[source]: Use it.
2017-03-12 18:40:56 +01:00
Marius Bakke
343cee8af3
gnu: python@3.5: Update to 3.5.3.
* gnu/packages/python.scm (python-3.5, python-minimal, python-minimal-wrapper,
python-wrapper): Update to 3.5.3.
* gnu/packages/patches/python-fix-tests.patch: Adjust patch context.
* gnu/packages/patches/python-3.5-fix-tests.patch: Likewise. Patch one new test.
2017-03-12 18:40:56 +01:00
Leo Famulari
c84c8f66f5
gnu: wget: Fix CVE-2017-6508.
* gnu/packages/patches/wget-CVE-2017-6508.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/wget.scm (wget)[source]: Use it.
2017-03-10 22:36:58 -05:00
Ben J. Woodcroft
79f09fa239
gnu: hmmer: Build reproducibly.
* gnu/packages/patches/hmmer-remove-cpu-specificity.patch: New file.
* gnu/packages/bioinformatics.scm (hmmer): Use it.
2017-03-10 20:31:30 +10:00
Marius Bakke
ce79279d34
gnu: python-pandas: Really fix build on 32bit.
* gnu/packages/patches/python-pandas-skip-failing-tests.patch: Fix confusion
with same-named test.
2017-03-09 16:39:08 +01:00
Ludovic Courtès
e90e0fad1b
Merge branch 'master' into core-updates 2017-03-09 16:35:41 +01:00
Mark H Weaver
7b1866d783
gnu: python-fake-factory: Add back missing patch file.
This reverts the removal of "python-fake-factory-fix-build-32bit.patch"
by commit ce7911ddae.

* gnu/packages/patches/python-fake-factory-fix-build-32bit.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2017-03-09 06:08:18 -05:00
Marius Bakke
b03ee02f0d
gnu: python-pandas: Fix build on 32-bit.
* gnu/packages/patches/python-pandas-skip-failing-tests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/python.scm (python-pandas, python2-pandas): Use it.
2017-03-08 18:04:23 +01:00
Marius Bakke
ce7911ddae
gnu: Add python-faker.
* gnu/packages/patches/python-fake-factory-fix-build-32bit.patch: Adjust
paths. Also rename to ...
* gnu/packages/patches/python-faker-fix-build-32bit.patch: ... this.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/python.scm (python-faker, python2-faker): New variables.
(python-fake-factory)[properties]: Superseded by PYTHON-FAKER.
(python2-fake-factory)[properties]: Superseded by PYTHON2-FAKER.
(python-orator, python2-orator)[propagated-inputs]: Replace
PYTHON-FAKE-FACTORY with PYTHON-FAKER.
2017-03-08 18:00:43 +01:00
Marius Bakke
9bb766e70d
gnu: pcre2: Update to 10.23.
* gnu/packages/pcre.scm (pcre2): Update to 10.23.
[source]: Remove patch.
[arguments]: Add phase to substitute /bin/echo reference.
* gnu/packages/patches/pcre2-CVE-2016-3191.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-03-07 23:21:22 +01:00
Leo Famulari
f11275c9e5
gnu: gnupg: Update to 2.1.19.
* gnu/packages/gnupg.scm (gnupg): Update to 2.1.19.
[arguments]: Add 'patch-test-paths' phase and remove 'set-gnupg-home' phase.
Add '--enable-gnupg-builddir-envvar' to #:configure-flags.
[source]: Add 'gnupg-2.1-fix-Y2038-test-failure.patch'.
* gnu/packages/patches/gnupg-2.1-fix-Y2038-test-failure.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2017-03-07 16:37:17 -05:00
Marius Bakke
6cb7477699
gnu: python-statsmodels: Update to 0.8.0.
* gnu/packages/statistics.scm (python-statsmodels, python2-statsmodels):
Update to 0.8.0.
[source]: Use 'pypi-uri'.
[arguments]: Add more files to matplotlib backend substitution.
* gnu/packages/patches/python-statsmodels-fix-tests.patch: Drop test that
fails with numpy 1.12. Remove previous contents.
2017-03-06 23:24:11 +01:00
Thomas Danckaert
4535a93adb
gnu: python-matplotlib: Update to 2.0.0.
* gnu/packages/python.scm (python-matplotlib, python2-matplotlib): Update to
2.0.0.
[source]: Remove Tk backend patch, use Github instead of Sourceforge.
[outputs]: Remove "doc" output.
[inputs]: Add python-pyqt.
[propagated-inputs]: Add python-cycler.
[native-inputs]: Remove python-sphinx, python-numpydoc, texlive and texinfo.
(python2-matplotlib)[native-inputs]: Add python2-functools32 and
python2-subprocess32.
(python-matplotlib-documentation, python2-matplotlib-documentation): New
variables.
* gnu/packages/patches/matplotlib-setupext-tk.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove patch.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-03-06 23:22:22 +01:00
Marius Bakke
550bd98b41
gnu: Add python2-subprocess32.
* gnu/packages/python.scm (python2-subprocess32): New variable.
* gnu/packages/patches/python2-subprocess32-disable-input-test.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2017-03-06 23:21:34 +01:00
Leo Famulari
e20784e65e
gnu: texlive: Fix CVE-2016-10243.
* gnu/packages/patches/texlive-texmf-CVE-2016-10243.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/tex.scm (texlive-texmf-src): Use it.
2017-03-06 16:47:37 -05:00
rennes
40c611a41d
gnu: wxwidgets: Fix for Filezilla client.
* gnu/packages/patches/wxwidgets-fix-windowGTK.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Signed-off-by: Leo Famulari <leo@famulari.name>
2017-03-04 23:15:01 -05:00
Leo Famulari
c35745edc4
gnu: kio: Fix CVE-2017-6410.
* gnu/packages/patches/kio-CVE-2017-6410.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/kde-frameworks.scm (kio)[source]: Use it.
2017-03-04 18:35:17 -05:00
Julien Lepiller
60a5080675
gnu: php: Update to 7.1.2.
* gnu/packages/php.scm (php): Update to 7.1.2.
[inputs]: Add gnutls.
[arguments]: Disable more tests in 'prepare-tests' phase.
(gd-for-php): Remove variable.
* gnu/packages/patches/gd-fix-chunk-size-on-boundaries.patch,
gnu/packages/patches/gd-fix-truecolor-format-correction.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.

Signed-off-by: Leo Famulari <leo@famulari.name>
2017-03-03 14:12:31 -05:00
Julien Lepiller
e8293ef12c
gnu: gd: Fix an issue with XBM decoding.
* gnu/packages/patches/gd-php-73968-Fix-109-XBM-reading.patch: New file.
* gnu/local.scm (dist_patch_DATA): Add it.
* gnu/packages/gd.scm (gd)[source]: Use it.

Signed-off-by: Leo Famulari <leo@famulari.name>
2017-03-03 14:12:30 -05:00
Andreas Enge
21abf092a4
gnu: arb: Update to 2.10.0.
* gnu/packages/algebra.scm (arb): Update to 2.10.0.
* gnu/packages/patches/arb-ldconfig.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove patch.
2017-03-03 18:33:19 +01:00
Marius Bakke
3b175eab84
gnu: nss, nss-certs: Update to 3.29.2.
* gnu/packages/certs.scm (nss-certs): Update to 3.29.2.
* gnu/packages/gnuzilla.scm (nss): Update to 3.29.2.
* gnu/packages/patches/nss-pkgconfig.patch: Adapt to context changes.
2017-03-03 17:26:24 +01:00
Marius Bakke
3f98071ac5
Merge branch 'python-tests' 2017-03-03 16:55:43 +01:00
Alex Vong
92ae98e2a0
gnu: mupdf: Fix CVE-2017-{5896,5991}.
* gnu/packages/patches/mupdf-CVE-2017-5896.patch,
gnu/packages/patches/mupdf-CVE-2017-5991.patch: New files.
* gnu/packages/pdf.scm (mupdf/fixed)[source]: Add patches.
* gnu/local.mk (dist_patch_DATA): Add them.

Signed-off-by: Leo Famulari <leo@famulari.name>
2017-03-03 04:47:52 -05:00
John Darrington
479c4273e6
gnu: Add jacal.
* gnu/packages/maths.scm (jacal): New variable.
* gnu/packages/patches/jacal-fix-texinfo.patch: New file.
2017-03-02 18:17:26 +01:00
Rene Saavedra
37e78bc7f2
gnu: fontconfig: Fix PATH_MAX for Hurd systems.
* gnu/packages/patches/fontconfig-path-max.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/fontutils.scm (fontconfig)[source]: Use it.

Signed-off-by: Manolis Ragkousis <manolis837@gmail.com>
2017-03-02 14:35:17 +02:00
Leo Famulari
d8bcf08088
gnu: vdirsyncer: Update to 0.15.0.
* gnu/packages/dav.scm (vdirsyncer): Update to 0.15.0.
[source]: Remove obsolete patch 'vdirsyncer-test-suite-slow-machines.patch'.
* gnu/packages/patches/vdirsyncer-test-suite-slow-machines.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-03-01 22:33:11 -05:00
Efraim Flashner
cec21d689d
gnu: libdrm-symbol-check.patch: Add case for radeon.
* gnu/packages/patches/libdrm-symbol-check.patch: Add the extra seven
symbols from the public headers to the radeon-symbol-check to satisfy
the test.  Also add aarch64-linux to the list of architectures affected.
2017-03-01 22:43:46 +02:00
Efraim Flashner
13e4a6c863
gnu: screen: Update to 4.5.1.
* gnu/packages/screen.scm (screen): Update to 4.5.1.
[source]: Remove patch.
* gnu/packages/patches/screen-CVE-2017-5618.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-02-28 21:01:26 +02:00
Manolis Ragkousis
751702676e
guix: build: make-bootstrap: Copy "falloc.h" to the new system.
In glibc-2.25 a dependency on "linux/falloc.h" was added.
This also reverts commit 8f8f250bdc
which is no longer needed. This commit was not compatible with
the glibc version Hurd is using. See
<https://lists.gnu.org/archive/html/guix-devel/2017-02/msg01046.html>

* guix/build/make-bootstrap.scm (make-stripped-libc): Copy "falloc.h"
to the new system.
* gnu/packages/patches/glibc-bootstrap-system.patch: Remove part
that touches fcntl-linux.h.

Problem reported by Andreas Enge <andreas@enge.fr>.
2017-02-27 15:31:06 +02:00
Marius Bakke
8779987bba
Merge branch 'master' into python-tests 2017-02-27 12:42:22 +01:00
Leo Famulari
1d8e727357
gnu: gst-plugins-base: Update to 1.10.4.
* gnu/packages/gstreamer.scm (gst-plugins-base): Update to 1.10.4.
[source]: Remove obsolete patch 'gst-plugins-base-fix-test-on-32bit.patch'
* gnu/packages/patches/gst-plugins-base-fix-test-on-32bit.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-02-27 04:04:51 -05:00
Marius Bakke
ac2d5de3da
gnu: libssh2: Fix build failure after 1.8.0 upgrade.
* gnu/packages/patches/libssh2-fix-build-failure-with-gcrypt.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/ssh.scm (libssh2)[source]: Use it.
[arguments]: Add 'autoreconf' phase.
[native-inputs]: Add AUTOCONF and AUTOMAKE.
2017-02-26 22:05:42 +01:00
Leo Famulari
56a44e2d5b
gnu: gd: Fix test failure with FreeType 2.7.
* gnu/packages/patches/gd-freetype-test-failure.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gd.scm (gd)[source]: Use it.
2017-02-26 15:46:03 -05:00
Marius Bakke
b01a89854b
gnu: Remove unused patch.
This is a followup to 6f9d5b2e8c.

* gnu/packages/patches/libssh-0.6.5-CVE-2016-0739.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-02-26 21:41:21 +01:00
Leo Famulari
ffa771d2b4
gnu: vim: Use upstream fix for CVE-2017-5953.
* gnu/packages/patches/vim-CVE-2017-5953.patch: Adjust to match upstream changes.
2017-02-26 12:04:16 -05:00
Leo Famulari
fe36608f99
gnu: fontconfig: Fix build failure caused by symbol conflict with glibc@2.25.
* gnu/packages/patches/fontconfig-charwidth-symbol-conflict.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/fontutils.scm (fontconfig)[source]: Use it.
2017-02-26 11:39:09 -05:00
Leo Famulari
f0a01af5c6
gnu: eudev: Fix build failure caused by conflicting function type declaration.
* gnu/packages/patches/eudev-conflicting-declaration.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/linux.scm (eudev)[source]: Use it.
2017-02-26 11:39:09 -05:00
Ricardo Wurmus
1885bb0c08
gnu: python-dendropy: Fix failing tests.
* gnu/packages/patches/python-dendropy-fix-tests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/bioinformatics.scm (python-dendropy)[source]: Add patch.
2017-02-24 23:44:31 +01:00
Leo Famulari
816417f5a4
gnu: tcsh: Update to 6.20.00.
* gnu/packages/shells.scm (tcsh): Update to 6.20.00.
[source]: Remove 'tcsh-do-not-define-BSDWAIT.patch'.
[inputs]: Remove coreutils. Move autoconf to ...
[native-inputs]: ... here. Add perl.
* gnu/packages/patches/tcsh-fix-autotest.patch: Adjust patch to upstream
changes.
* gnu/packages/patches/tcsh-do-not-define-BSDWAIT.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2017-02-24 13:22:06 -05:00
Marius Bakke
42945fb58c
gnu: python-fake-factory: Fix build on 32bit.
* gnu/packages/patches/python-fake-factory-fix-build-32bit.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/python.scm (python-fake-factory, python2-fake-factory)[source]:
Use it.
2017-02-24 18:55:29 +01:00
Leo Famulari
1d311009fe
gnu: util-linux: Fix CVE-2017-2616.
* gnu/packages/patches/util-linux-CVE-2017-2616.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/linux.scm (util-linux)[replacement]: New field.
(util-linux/fixed): New variable.
2017-02-23 15:01:54 -05:00
Leo Famulari
1c851cbe0c
gnu: shadow: Fix CVE-2017-2616.
* gnu/packages/patches/shadow-CVE-2017-2616.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/admin.scm (shadow): Use it.
2017-02-23 14:59:50 -05:00
Marius Bakke
5f3070a500
gnu: alsa-lib: Update to 1.1.3.
* gnu/packages/patches/alsa-lib-mips-atomic-fix.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/linux.scm (alsa-lib): Update to 1.1.3.
[source]: Remove patch.
[home-page]: Use HTTPS.
2017-02-23 11:02:21 +01:00
Marius Bakke
2f7b4749e7
gnu: libxcb: Update to 1.12.
* gnu/packages/patches/libxcb-python-3.5-compat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/xorg.scm (libxcb): Update to 1.12.
[source]: Add patch. Download from new home.
[home-page]: Change to new xcb.fd.o home.
2017-02-22 13:31:49 +01:00
Marius Bakke
ba5e23d605
gnu: xcb-proto: Update to 1.12.
* gnu/packages/patches/xcb-proto-python3-print.patch,
  gnu/packages/patches/xcb-proto-python3-whitespace.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/xorg.scm (xcb-proto): Update to 1.12.
[source]: Use patches. Download from new home.
[home-page]: Change to new xcb.fd.o home.
2017-02-22 13:31:48 +01:00
Marius Bakke
827dc6295c
gnu: libepoxy: Update to 1.4.0.
* gnu/packages/patches/libepoxy-gl-null-checks.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/gl.scm (libepoxy): Update to 1.4.0.
[source]: Remove patch. Use release tarball and remove explicit file-name.
[arguments]: Drop 'autoreconf' phase. Remove obsolete test substitution.
[native-inputs]: Remove AUTOCONF, AUTOMAKE and LIBTOOL.
2017-02-22 07:26:04 +01:00
Marius Bakke
f12def72ae
gnu: xf86-input-wacom: Fix compatibility with xorg ABI 25.
* gnu/packages/patches/xf86-input-wacom-xorg-abi-25.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/xdisorg.scm (xf86-input-wacom)[source](patches): Use it.
2017-02-21 14:56:32 +01:00