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135862 commits

Author SHA1 Message Date
Ricardo Wurmus
3217303d2d
gnu: r-limma: Update to 3.60.0.
* gnu/packages/bioconductor.scm (r-limma): Update to 3.60.0.

Change-Id: I55142eccce0230fa8f96ff88948fd68ab2d67bdc
2024-05-08 12:53:24 +02:00
Ricardo Wurmus
d9159c5bf7
gnu: r-lfa: Update to 2.4.0.
* gnu/packages/bioconductor.scm (r-lfa): Update to 2.4.0.

Change-Id: I249d9c6e24a30ea6b214afe5d48289184ada132a
2024-05-08 12:53:24 +02:00
Ricardo Wurmus
62c868854c
gnu: r-lea: Update to 3.16.0.
* gnu/packages/bioconductor.scm (r-lea): Update to 3.16.0.

Change-Id: Id74077d5fbcee1c01df06e56f60efe3b75ad6be8
2024-05-08 12:53:24 +02:00
Ricardo Wurmus
7d732b0a0e
gnu: r-keggrest: Update to 1.44.0.
* gnu/packages/bioconductor.scm (r-keggrest): Update to 1.44.0.

Change-Id: I09a55fb30b482cadc9fedd8e2e2b703c8d9f4cb4
2024-05-08 12:53:24 +02:00
Ricardo Wurmus
f7e6c6592b
gnu: r-interactivedisplaybase: Update to 1.42.0.
* gnu/packages/bioconductor.scm (r-interactivedisplaybase): Update to 1.42.0.

Change-Id: I403f2554ae1312fc12388d0c291ba727d9825e1d
2024-05-08 12:53:24 +02:00
Ricardo Wurmus
af492d1f48
gnu: r-interactivedisplay: Update to 1.42.0.
* gnu/packages/bioconductor.scm (r-interactivedisplay): Update to 1.42.0.

Change-Id: Id8afe194c00e3c17e2953027ae167bb924245ceb
2024-05-08 12:53:24 +02:00
Ricardo Wurmus
7e49068c5d
gnu: r-impute: Update to 1.78.0.
* gnu/packages/bioconductor.scm (r-impute): Update to 1.78.0.

Change-Id: I53c06ca20ec8553294cc44af527181f6e03b39b8
2024-05-08 12:53:24 +02:00
Ricardo Wurmus
822b15d310
gnu: r-rnbeads: Update to 2.22.0.
* gnu/packages/bioconductor.scm (r-rnbeads): Update to 2.22.0.

Change-Id: I2b368fb296a05e0e4f0c7dd634d07203580b409b
2024-05-08 12:53:23 +02:00
Ricardo Wurmus
2c1a7b4ee3
gnu: r-rhtslib: Update to 3.0.0.
* gnu/packages/bioconductor.scm (r-rhtslib): Update to 3.0.0.

Change-Id: I274d28c16b20e7fbb4e23fa83d438e126bb56fcf
2024-05-08 12:53:23 +02:00
Ricardo Wurmus
a12af56abd
gnu: r-rdisop: Update to 1.64.0.
* gnu/packages/bioconductor.scm (r-rdisop): Update to 1.64.0.

Change-Id: Ife4ff5b23ce4827280d9a905f95a53119d5a3adb
2024-05-08 12:53:23 +02:00
Ricardo Wurmus
1d58369140
gnu: r-raggedexperiment: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-raggedexperiment): Update to 1.28.0.

Change-Id: I6a0d62fdad2c6a0d63cbf0227a32bf41f43cf8b7
2024-05-08 12:53:23 +02:00
Ricardo Wurmus
b262fe9435
gnu: r-radiogx: Update to 2.8.0.
* gnu/packages/bioconductor.scm (r-radiogx): Update to 2.8.0.

Change-Id: I31e473c038c3750c82eb1ba92265793a33e079d5
2024-05-08 12:53:23 +02:00
Ricardo Wurmus
50e803b4e4
gnu: r-r4rna: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-r4rna): Update to 1.32.0.

Change-Id: I90b410b47fa10eedc33f39117c2e3bad8c5704c1
2024-05-08 12:53:23 +02:00
Ricardo Wurmus
0f78db0b7c
gnu: r-r3cseq: Update to 1.50.0.
* gnu/packages/bioconductor.scm (r-r3cseq): Update to 1.50.0.

Change-Id: Id35b1b4b6e4b7fe469738601ba7342733211006e
2024-05-08 12:53:23 +02:00
Ricardo Wurmus
a5aec1a666
gnu: r-hpar: Update to 1.46.0.
* gnu/packages/bioconductor.scm (r-hpar): Update to 1.46.0.

Change-Id: I19cec4798c2e3cc0027bc617f69be899308f37e0
2024-05-08 12:53:23 +02:00
Ricardo Wurmus
7881ac326f
gnu: r-harshlight: Update to 1.76.0.
* gnu/packages/bioconductor.scm (r-harshlight): Update to 1.76.0.

Change-Id: I5e64edbe1204d588395dfc3de9d993a1b768f60e
2024-05-08 12:53:23 +02:00
Ricardo Wurmus
d21eedf535
gnu: r-gsva: Update to 1.52.0.
* gnu/packages/bioconductor.scm (r-gsva): Update to 1.52.0.
[propagated-inputs]: Add r-spatialexperiment.

Change-Id: Ie6b62b430699d2f09853c9fb5e32fae4026d231c
2024-05-08 12:53:23 +02:00
Ricardo Wurmus
1a6aaa7def
gnu: r-gseabase: Update to 1.66.0.
* gnu/packages/bioconductor.scm (r-gseabase): Update to 1.66.0.

Change-Id: I3bdcaba553a3f23216cb12320700a0a3e4a9b1e9
2024-05-08 12:53:23 +02:00
Ricardo Wurmus
f3bba92781
gnu: r-gostats: Update to 2.70.0.
* gnu/packages/bioconductor.scm (r-gostats): Update to 2.70.0.

Change-Id: I8d5294d59bffc77e1ffc756322eb4c366a33378c
2024-05-08 12:53:23 +02:00
Ricardo Wurmus
527a14c683
gnu: r-globaltest: Update to 5.58.0.
* gnu/packages/bioconductor.scm (r-globaltest): Update to 5.58.0.

Change-Id: Ia73f602887c43ed4e565e75bcf370819127d0b73
2024-05-08 12:53:23 +02:00
Ricardo Wurmus
9dc7f60a11
gnu: r-globalancova: Update to 4.22.0.
* gnu/packages/bioconductor.scm (r-globalancova): Update to 4.22.0.

Change-Id: I0838f628cafd72a81338834d23725af8006484be
2024-05-08 12:53:23 +02:00
Ricardo Wurmus
d24da52e01
gnu: r-glad: Update to 2.68.0.
* gnu/packages/bioconductor.scm (r-glad): Update to 2.68.0.

Change-Id: I23a9ae3774df25944d152670505a33045a9d080a
2024-05-08 12:53:23 +02:00
Ricardo Wurmus
e86eca3600
gnu: r-genomicranges: Update to 1.56.0.
* gnu/packages/bioconductor.scm (r-genomicranges): Update to 1.56.0.

Change-Id: If3a2bee7626fc0ff189baf5454ecd32ec924dccc
2024-05-08 12:53:23 +02:00
Ricardo Wurmus
d8967c42bd
gnu: r-genomicfiles: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-genomicfiles): Update to 1.40.0.

Change-Id: I388879e7bf8c79298aeea2e9efe919cacd03dfc3
2024-05-08 12:53:23 +02:00
Ricardo Wurmus
5cbbe74dfb
gnu: r-genomicfeatures: Update to 1.56.0.
* gnu/packages/bioconductor.scm (r-genomicfeatures): Update to 1.56.0.
[propagated-inputs]: Remove r-biobase, r-biocio, r-biomart, r-httr, r-rjson, and r-rsqlite.

Change-Id: I6278eb17ce4257263d3461ae10c7592bc4ff2858
2024-05-08 12:53:23 +02:00
Ricardo Wurmus
33d4483b83
gnu: r-genomicdatacommons: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-genomicdatacommons): Update to 1.28.0.

Change-Id: I806d1a8f81f9f4541e6b318c623078e018f0367c
2024-05-08 12:53:23 +02:00
Ricardo Wurmus
f315a4f790
gnu: r-genomicalignments: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-genomicalignments): Update to 1.40.0.

Change-Id: I01b78a49c0c4d1cd28181a2c135e987fd9106d7c
2024-05-08 12:53:23 +02:00
Ricardo Wurmus
279dd07d97
gnu: r-genomeinfodb: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.40.0.
[propagated-inputs]: Remove r-rcurl; add r-ucsc-utils.

Change-Id: I5146dbd585fa622b50879832bdaa0034c38fd4ba
2024-05-08 12:53:23 +02:00
Ricardo Wurmus
8e690a6950
gnu: r-genomation: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-genomation): Update to 1.36.0.

Change-Id: I55871cadc7e391f1c3af61a5ed83c36d7e8a5253
2024-05-08 12:53:23 +02:00
Ricardo Wurmus
d69d0f84b8
gnu: r-geneoverlap: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-geneoverlap): Update to 1.40.0.

Change-Id: I602463977ac37403ee938fd309f901ebd11d1f77
2024-05-08 12:53:22 +02:00
Ricardo Wurmus
22a6c1f765
gnu: r-genefilter: Update to 1.86.0.
* gnu/packages/bioconductor.scm (r-genefilter): Update to 1.86.0.

Change-Id: Iab450b1502832422bb45ee7b00247368a6898818
2024-05-08 12:53:22 +02:00
Ricardo Wurmus
cddd24c450
gnu: r-gage: Update to 2.54.0.
* gnu/packages/bioconductor.scm (r-gage): Update to 2.54.0.

Change-Id: Ie455bb98bca5d3d7a741ef0172d064a375cf1556
2024-05-08 12:53:22 +02:00
Ricardo Wurmus
d0c40e12ae
gnu: r-fastseg: Update to 1.50.0.
* gnu/packages/bioconductor.scm (r-fastseg): Update to 1.50.0.

Change-Id: I4ec7016587a6a497009b04b59a1fd33cdd72b9cb
2024-05-08 12:53:22 +02:00
Ricardo Wurmus
d7efd3ea46
gnu: r-epidish: Update to 2.20.0.
* gnu/packages/bioconductor.scm (r-epidish): Update to 2.20.0.

Change-Id: I836109020ba9ae3cc0ed3a0b8334fd6ff0930c44
2024-05-08 12:53:22 +02:00
Ricardo Wurmus
0f4c0d59c7
gnu: r-ensembldb: Update to 2.28.0.
* gnu/packages/bioconductor.scm (r-ensembldb): Update to 2.28.0.

Change-Id: If88b3d9dd605a4129b3602e680347a4a148312ae
2024-05-08 12:53:22 +02:00
Ricardo Wurmus
5392532dbf
gnu: r-enmix: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-enmix): Update to 1.40.0.

Change-Id: I5e98695357d26e3aef02f25140cd25295ed6f783
2024-05-08 12:53:22 +02:00
Ricardo Wurmus
a1cf3f862a
gnu: r-enhancedvolcano: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-enhancedvolcano): Update to 1.22.0.

Change-Id: I9390eb439700daf7ab53d5883688a05757004c99
2024-05-08 12:53:22 +02:00
Ricardo Wurmus
30be4dea15
gnu: r-edger: Update to 4.2.0.
* gnu/packages/bioconductor.scm (r-edger): Update to 4.2.0.

Change-Id: Ide6a7aaf2a313923dd1e6ff9e768dfce03010c34
2024-05-08 12:53:22 +02:00
Ricardo Wurmus
02f37641c7
gnu: r-edaseq: Update to 2.38.0.
* gnu/packages/bioconductor.scm (r-edaseq): Update to 2.38.0.

Change-Id: I44c161680cf0d49d4b72b8ed4f40841a74cbf948
2024-05-08 12:53:22 +02:00
Ricardo Wurmus
602331607d
gnu: r-dittoseq: Update to 1.16.0.
* gnu/packages/bioconductor.scm (r-dittoseq): Update to 1.16.0.

Change-Id: I9159c299fd82883a2d03e2fa17399c1d24cb7c62
2024-05-08 12:53:22 +02:00
Ricardo Wurmus
64474d5d84
gnu: r-dirichletmultinomial: Update to 1.46.0.
* gnu/packages/bioconductor.scm (r-dirichletmultinomial): Update to 1.46.0.

Change-Id: I0ef2d8bbca26042d001babd7bd25120144bad7cc
2024-05-08 12:53:22 +02:00
Ricardo Wurmus
0e9bde0048
gnu: r-diffcyt: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-diffcyt): Update to 1.24.0.

Change-Id: Ib7c5cf3735f78eb183ce4dc17307ad863d16c010
2024-05-08 12:53:22 +02:00
Ricardo Wurmus
2d5d0ab72f
gnu: r-dexseq: Update to 1.50.0.
* gnu/packages/bioconductor.scm (r-dexseq): Update to 1.50.0.

Change-Id: I5b695996799b23aeebf0545346264e3b02cf3ec5
2024-05-08 12:53:22 +02:00
Ricardo Wurmus
4c5c6b070e
gnu: r-deseq2: Update to 1.44.0.
* gnu/packages/bioconductor.scm (r-deseq2): Update to 1.44.0.

Change-Id: I7108fee1c2bf927a43d339ee5640d4a1bed6a2f4
2024-05-08 12:53:22 +02:00
Ricardo Wurmus
b30d4d1cc8
gnu: r-complexheatmap: Update to 2.20.0.
* gnu/packages/bioconductor.scm (r-complexheatmap): Update to 2.20.0.

Change-Id: I9b557819bac13ba00ee86dd43709c4e1b7517cde
2024-05-08 12:53:22 +02:00
Ricardo Wurmus
1de2a99743
gnu: r-chipseq: Update to 1.54.0.
* gnu/packages/bioconductor.scm (r-chipseq): Update to 1.54.0.

Change-Id: If80fc00811bd2707cbba97a64c2efe46848a8b60
2024-05-08 12:53:22 +02:00
Ricardo Wurmus
0298c87534
gnu: r-chipseeker: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-chipseeker): Update to 1.40.0.

Change-Id: I6eb05f4da33610aa1ecb90ea75470bda1c184f0a
2024-05-08 12:53:22 +02:00
Ricardo Wurmus
0b92bb1f1e
gnu: r-category: Update to 2.70.0.
* gnu/packages/bioconductor.scm (r-category): Update to 2.70.0.

Change-Id: Ia102f873af5883aeba3379366953cecdec2be342
2024-05-08 12:53:22 +02:00
Ricardo Wurmus
e6032ad668
gnu: r-bsgenome: Update to 1.72.0.
* gnu/packages/bioconductor.scm (r-bsgenome): Update to 1.72.0.

Change-Id: Id0855145e079e607ab915ef9076c637059c81fd8
2024-05-08 12:53:22 +02:00
Ricardo Wurmus
9a071ad941
gnu: r-biovizbase: Update to 1.52.0.
* gnu/packages/bioconductor.scm (r-biovizbase): Update to 1.52.0.

Change-Id: I71ac5375c00fadedc44c4f027b236648b3e2a4cd
2024-05-08 12:53:22 +02:00