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Author SHA1 Message Date
Adriano Peluso
3271dd71a5
mailmap: Update entries for Adriano Peluso 
* .mailmap: Add new entry for Adriano Peluso

Signed-off-by: Leo Famulari <leo@famulari.name>
 2017-05-23 13:29:58 -04:00
Jelle Licht
ea584538ac
gnu: node: Use unbundled dependencies. 
* gnu/packages/node.scm (node)[inputs]: Add c-ares and http-parser.
[arguments]: Add configure flags for using system libraries.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-05-23 18:27:35 +02:00
Jelle Licht
1fdb883082
gnu: node: Update to 7.10.0. 
* gnu/packages/node.scm (node): Update to 7.10.0.
(node)[arguments]: Disabled more tests.
* gnu/packages/patches/node-9077.patch: Delete incompatible patch file.
Recreate patch file from node pull request 9077.

Signed-off-by: Marius Bakke <mbakke@fastmail.com>
 2017-05-23 17:55:59 +02:00
Nicolas Goaziou
a7a7186ce6
gnu: Add MuseScore. 
* gnu/packages/music.scm (musescore): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2017-05-23 13:35:44 +02:00
Arun Isaac
b1d32ec0e2
gnu: emacs-auctex: Add arguments to work with new `install' phase. 
* gnu/packages/emacs.scm (emacs-auctex)[arguments]: Add #:include and
  #:exclude arguments.
 2017-05-23 06:12:49 +05:30
Arun Isaac
e8cefe1103
gnu: emacs-slime: Add arguments to work with new `install' phase. 
* gnu/packages/emacs.scm (emacs-slime)[arguments]: Add #:include and #:exclude
  arguments.
 2017-05-23 06:12:49 +05:30
Arun Isaac
d879685176
build-system: emacs: Install only a subset of files. 
* guix/build/emacs-build-system.scm (install): Install files matching
  #:include while excluding files matching #:exclude.
* guix/build-system/emacs.scm (emacs-build): Add keyword arguments #:include
  and #:exclude.
 2017-05-23 06:12:43 +05:30
Marius Bakke
0dc4a498a3
install: Add 'passwd' to installation image. 
* gnu/system/install.scm (installation-os): Add SHADOW in package list.
 2017-05-23 01:22:22 +02:00
Arun Isaac
d0a26f3a68
build: emacs: Fix `store-file->elisp-source-file'. 
This prevents a ".el.el" extension for source files with no version number in
their file name.

* guix/build/emacs-build-system.scm (store-file->elisp-source-file): Remove
  ".el" extension from file name before splitting to name and version.
 2017-05-23 04:35:06 +05:30
Arun Isaac
5ae59eb6d9
guix: lint: Slightly simplify `check-source-file-name'. 
* guix/scripts/lint.scm (check-source-file-name): Implement file name matching
  with regular expression.
 2017-05-23 04:35:06 +05:30
Arun Isaac
ad25e9962e
gnu: lint: Fix typo. 
* guix/scripts/lint.scm (check-source-file-name): Fix wrong return value in
  docstring.
 2017-05-23 04:35:06 +05:30
Ben Woodcroft
b608765a2c
gnu: diamond: Update to 0.9.1. 
* gnu/packages/bioinformatics.scm (diamond): Update to 0.9.1.
 2017-05-22 21:17:41 +01:00
Mathieu Othacehe
a6b055d453
mailmap: Add an entry for Mathieu Othacehe. 
This avoids duplicated entries with Othacehe in uppercase.
 2017-05-22 21:50:05 +02:00
Ricardo Wurmus
9117448e76
gnu: Remove GCJ. 
* gnu/packages/patches/gcj-arm-mode.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Delete it.
* gnu/packages/gcc.scm (javac.in, gcj, ecj-bootstrap): Remove variables.
 2017-05-22 18:56:35 +02:00
Ricardo Wurmus
e441fc564b
gnu: ant: Implement in terms of ant/java8. 
* gnu/packages/java.scm (ant): Inherit from ant/java8.
 2017-05-22 18:56:35 +02:00
Ricardo Wurmus
8bbd040840
gnu: Add ant/java8. 
* gnu/packages/java.scm (ant/java8): New variable.
 2017-05-22 18:56:35 +02:00
Ricardo Wurmus
5c7952fbf4
gnu: ant: Move after bootstrap packages. 
* gnu/packages/java.scm (ant): Move package.
 2017-05-22 18:56:35 +02:00
Ricardo Wurmus
e7a5d73ea9
gnu: ant: Delete bundled jars. 
* gnu/packages/java.scm (ant)[source]: Delete bundled jars in a snippet.
 2017-05-22 18:56:35 +02:00
Ricardo Wurmus
fded0c69dd
gnu: ant: Inherit from ant-bootstrap. 
* gnu/packages/java.scm (ant)[build-system]
[home-page][synopsis][description][license]: Remove fields.
[arguments]: Adapt arguments of ant-bootstrap package.
 2017-05-22 18:56:35 +02:00
Ricardo Wurmus
fc6e27271d
gnu: clojure: Move below bootstrap packages. 
* gnu/packages/java.scm (clojure): Move package.
 2017-05-22 18:56:34 +02:00
Ricardo Wurmus
5490480c42
gnu: java-swt: Move below the bootstrap packages. 
* gnu/packages/java.scm (java-swt): Move the package.
 2017-05-22 18:56:34 +02:00
Ricardo Wurmus
e2098e2d58
gnu: icedtea-7: Use icedtea-6 for bootstrapping. 
* gnu/packages/java.scm (icedtea-7)[source]: Remove Makefile.in patch to link
with GCJ libs.
[arguments]: Remove (ice-9 rdelim) module; adjust configure flags; do not add
GCJ headers to CPATH in build phase "set-additional-paths".
[native-inputs]: Remove gcj and ant; add icedtea-6 and ant-bootstrap.  Remove
autoconf and automake.
(icedtea-8)[native-inputs]: Delete "icedtea" from the inherited inputs, not
"gcj".
 2017-05-22 18:56:34 +02:00
Ricardo Wurmus
9841931668
gnu: Add icedtea-6. 
* gnu/packages/java.scm (icedtea-6): New variable.
 2017-05-22 18:56:34 +02:00
Ricardo Wurmus
1bf56c7233
gnu: Add ecj-javac-on-jamvm-wrapper-final. 
* gnu/packages/java.scm (ecj-javac-on-jamvm-wrapper-final): New variable.
 2017-05-22 18:56:34 +02:00
Ricardo Wurmus
8c6091e3a6
gnu: Add jamvm. 
* gnu/packages/java.scm (jamvm): New variable.
 2017-05-22 18:56:33 +02:00
Ricardo Wurmus
72885a4c8f
gnu: Add classpath-devel. 
* gnu/packages/java.scm (classpath-devel): New variable.
 2017-05-22 18:56:33 +02:00
Ricardo Wurmus
7292d69419
gnu: Add ecj-javac-on-jamvm-wrapper. 
* gnu/packages/java.scm (ecj-javac-on-jamvm-wrapper): New variable.
 2017-05-22 18:56:33 +02:00
Ricardo Wurmus
04d7cae2c4
gnu: Add classpath-jamvm-wrappers. 
* gnu/packages/java.scm (classpath-jamvm-wrappers): New variable.
 2017-05-22 18:56:33 +02:00
Ricardo Wurmus
5f4402c7a3
gnu: Add jamvm-bootstrap. 
* gnu/packages/java.scm (jamvm-bootstrap): New variable.
 2017-05-22 18:56:33 +02:00
Ricardo Wurmus
d3551e861e
gnu: Add classpath. 
* gnu/packages/java.scm (classpath): New variable.
 2017-05-22 18:56:33 +02:00
Ricardo Wurmus
6a5829d995
gnu: Add ecj-javac-wrapper. 
* gnu/packages/java.scm (ecj-javac-wrapper): New variable.
 2017-05-22 18:56:32 +02:00
Ricardo Wurmus
5461721fa0
gnu: Add ecj-bootstrap. 
* gnu/packages/java.scm (ecj-bootstrap): New variable.
 2017-05-22 18:56:32 +02:00
Ricardo Wurmus
5783bd7730
gnu: Add ant-bootstrap. 
* gnu/packages/java.scm (ant-bootstrap): New variable.
 2017-05-22 18:56:32 +02:00
Ricardo Wurmus
57f6c50db1
gnu: Add sablevm. 
* gnu/packages/java.scm (sablevm): New variable.
 2017-05-22 18:56:32 +02:00
Ricardo Wurmus
2551fee8a0
gnu: Add sablevm-classpath. 
* gnu/packages/java.scm (sablevm-classpath): New variable.
 2017-05-22 18:56:32 +02:00
Ricardo Wurmus
e1ae3587d2
gnu: Add jikes. 
* gnu/packages/java.scm (jikes): New variable.
 2017-05-22 18:55:34 +02:00
Ricardo Wurmus
296b3c631c
gnu: Add r-edaseq. 
* gnu/packages/bioinformatics.scm (r-edaseq): New variable.
 2017-05-22 18:54:59 +02:00
Ricardo Wurmus
7b46532779
gnu: Add r-deseq. 
* gnu/packages/bioinformatics.scm (r-deseq): New variable.
 2017-05-22 18:54:59 +02:00
Ricardo Wurmus
d4b83651d1
gnu: Add r-aroma-light. 
* gnu/packages/bioinformatics.scm (r-aroma-light): New variable.
 2017-05-22 18:54:58 +02:00
Marius Bakke
fd3782d13b
Merge branch 'version-0.13.0' 2017-05-22 18:25:01 +02:00
Ludovic Courtès
7c63fff6d0
Update NEWS. 2017-05-22 17:25:08 +02:00
Marius Bakke
52d2a2be1f
gnu: vte-ng: Update to 0.48.3.a. 
* gnu/packages/gnome.scm (vte-ng): Update to 0.48.3.a.
 2017-05-22 15:28:59 +02:00
Marius Bakke
b7c0c756da
gnu: gexiv2: Update to 0.10.6. 
* gnu/packages/gnome.scm (gexiv2): Update to 0.10.6.
 2017-05-22 15:17:12 +02:00
Marius Bakke
123e816816
gnu: dconf-editor: Update to 3.22.3. 
* gnu/packages/gnome.scm (dconf-editor): Update to 3.22.3.
 2017-05-22 15:17:08 +02:00
Marius Bakke
e6a36cf2f3
gnu: aisleriot: Update to 3.22.2. 
* gnu/packages/gnome.scm (aisleriot): Update to 3.22.2.
 2017-05-22 15:17:01 +02:00
Marius Bakke
f2da7c861b
gnu: vte: Update to 0.48.3. 
* gnu/packages/gnome.scm (vte): Update to 0.48.3.
 2017-05-22 15:16:40 +02:00
Ben Woodcroft
74297231be
gnu: fraggenescan: Update to 1.30. 
* gnu/packages/bioinformatics.scm (fraggenescan): Update to 1.30.
[arguments]: Update patching of paths, install procedure.  Add new test
case.
 2017-05-22 11:44:20 +01:00
Ben Woodcroft
7569613076
gnu: roary: Update to 3.8.2. 
* gnu/packages/bioinformatics.scm (roary): Update to 3.8.2.
 2017-05-22 11:44:20 +01:00
Ben Woodcroft
3cbfc149c3
gnu: taxtastic: Update to 0.6.4. 
* gnu/packages/bioinformatics.scm (taxtastic): Update to 0.6.4.
[source]: Use PyPI URI.
 2017-05-22 11:44:19 +01:00
Roel Janssen
b458413721
gnu: r-mutationalpatterns: Update to 1.2.1. 
* gnu/packages/bioinformatics.scm (r-mutationalpatterns): Update to 1.2.1.
 2017-05-22 09:44:08 +02:00