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Author SHA1 Message Date
Guillaume Le Vaillant
4bd3fdda63
gnu: electrum: Update to 4.2.1. 
* gnu/packages/finance.scm (electrum): Update to 4.2.1.
  [inputs]: Replace python-aiorpcx-0.18 by python-aiorpcx. Add zbar.
 2022-04-16 11:26:48 +02:00
Guillaume Le Vaillant
6be6ea4276
gnu: electron-cash: Update to 4.2.7. 
* gnu/packages/finance.scm (electron-cash): Update to 4.2.7.
 2022-04-16 11:12:17 +02:00
Dominic Martinez
6db5787120
gnu: emacs-message-view-patch: Update to 0.2.0-40bc2e5 
* gnu/packages/emacs-xyz (emacs-message-view-patch): Update it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-15 19:13:03 +02:00
Dominic Martinez
c6c0c985d3
gnu: emacs-mu4e-patch: Rename to emacs-message-view-patch 
The name was changed upstream to reflect that this extension works for both
mu4e and gnus.

* gnu/packages/emacs-xyz.scm (emacs-mu4e-patch): Deprecate it.
(emacs-message-view-patch): Renamed from emacs-mu4e-patch. Description,
synopsis, and inputs adjusted to reflect that mu4e is not required.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-15 19:13:03 +02:00
Michael Rohleder
6995d68435
gnu: xfce4-diskperf-plugin: Update to 2.7.0. 
* gnu/packages/xfce.scm (xfce4-diskperf-plugin): Update to 2.7.0.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-15 19:13:03 +02:00
Michael Rohleder
3b2ea81894
gnu: elementary-xfce-icon-theme: Update to 0.16. 
* gnu/packages/xfce.scm (elementary-xfce-icon-theme): Update to 0.16.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-15 19:13:02 +02:00
Zhu Zihao
0495819926
gnu: xfce4-terminal: Update to 1.0.0. 
* gnu/packages/xfce.scm (xfce4-terminal): Update to 1.0.0.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-15 19:13:02 +02:00
Vincent Prat
4ed02d571a
gnu: Add python-verspec. 
* gnu/packages/python.xyz.scm (python-verspec): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-15 19:13:02 +02:00
Vincent Prat
304c6b395c
gnu: Add python-shtab. 
* gnu/packages/python-xyz.scm (python-shtab): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-15 19:13:02 +02:00
Ludovic Courtès
6e174c4edd
gnu: shepherd: Support cross-compilation. 
Reported by phodina <phodina@protonmail.com>.

* gnu/packages/admin.scm (shepherd-0.9)[arguments]: New field.
[native-inputs]: Add GUILE-FIBERS-1.1.
 2022-04-15 19:13:02 +02:00
B. Wilson
35a1de1a4c
gnu: mblaze: Offer contrib executables. 
* gnu/packages/mail.scm (mblaze)[outputs, inputs]: New fields.
[arguments]: Add #:modules.  Add 'install-contrib' phase.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-15 19:13:02 +02:00
Chadwain Holness
ff3355dcbf
gnu: streamlink: Update to 3.2.0. 
* gnu/packages/video.scm (streamlink): Update to 3.2.0.
[inputs]: Add python-lxml and python-pycountry, remove python-iso3166 and python-iso639.
[arguments]<#:phases>{check}: Use pytest.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
 2022-04-15 19:13:01 +02:00
Ludovic Courtès
ee617c4800
gnu: python-lxml: Add 4.7.1. 
* gnu/packages/xml.scm (python-lxml-4.7): New variable.
 2022-04-15 19:13:01 +02:00
André A. Gomes
179a949e60
gnu: cl-nfiles: Update to 0.4.0. 
* gnu/packages/lisp-xyz.scm (sbcl-nfiles): Update to 0.4.0.
  [inputs]: Add sbcl-quri.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2022-04-15 17:09:03 +02:00
Efraim Flashner
53a8e8fd6c
gnu: python-hmmlearn: Remove cythonized file. 
* gnu/packages/machine-learning.scm (python-hmmlearn)[source]: Add
snippet to remove cythonized file.
 2022-04-15 02:11:03 +03:00
Efraim Flashner
ac5f070631
gnu: python-aiohttp: Remove cythonized files. 
* gnu/packages/python-web.scm (python-aiohttp)[source]: Add snippet to
remove cythonized files.
 2022-04-14 23:30:27 +03:00
Efraim Flashner
802c94034c
gnu: python-pywavelets: Remove cythonized files. 
* gnu/packages/python-xyz.scm (python-pywavelets)[source]: Add snippet
to remove cythonized files.
[native-inputs]: Add python-cython.
 2022-04-14 23:23:18 +03:00
Efraim Flashner
6083372f61
gnu: python-igraph: Update to 0.9.10. 
* gnu/packages/graph.scm (python-igraph): Update to 0.9.10.
 2022-04-14 22:57:49 +03:00
Efraim Flashner
d6a5bdf000
gnu: igraph: Update to 0.9.8. 
* gnu/packages/graph.scm (igraph): Update to 0.9.8.
 2022-04-14 22:57:06 +03:00
Efraim Flashner
7034746e15
gnu: scregseg: Remove cythonized file. 
* gnu/packages/bioinformatics.scm (scregseg)[source]: Add snippet to
remove cythonized file.
 2022-04-14 22:55:33 +03:00
Paul A. Patience
5059e7f01e
gnu: cl-py4cl: Update to 0.0.0-1.2f2a008. 
* gnu/packages/lisp-xyz.scm (sbcl-py4cl): Update to 0.0.0-1.2f2a008.
  [arguments]<#:phases>: Adjust substitutions to renamed files.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2022-04-14 20:31:59 +02:00
jgart
8f5b2f0693
gnu: Add emacs-org-modern. 
* gnu/packages/emacs-xyz.scm (emacs-org-modern): New variable.

Signed-off-by: Raghav Gururajan <rg@raghavgururajan.name>
 2022-04-14 11:34:03 -04:00
Paul A. Patience
0ddca9d682
gnu: Add cl-numpy-file-format. 
* gnu/packages/lisp-xyz.scm (cl-numpy-file-format, ecl-numpy-file-format,
  sbcl-numpy-file-format): New variables.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2022-04-14 16:33:52 +02:00
Foo Chuan Wei
0f6aaf2f62
gnu: cl-who: Update to 1.1.4-3.07dafe9. 
* gnu/packages/lisp-xyz.scm (sbcl-cl-who): Update to 1.1.4-3.07dafe9.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2022-04-14 16:33:52 +02:00
Leo Famulari
6bf6529792
gnu: linux-libre 5.10: Update to 5.10.111. 
* gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.111.
(linux-libre-5.10-pristine-source): Update hash.
 2022-04-14 10:22:54 -04:00
Leo Famulari
0b20c8e071
gnu: linux-libre 5.15: Update to 5.15.34. 
* gnu/packages/linux.scm (linux-libre-5.15-version): Update to 5.15.34.
(linux-libre-5.15-pristine-source): Update hash.
 2022-04-14 10:22:54 -04:00
Leo Famulari
1b7f05f72c
gnu: linux-libre: Update to 5.16.20. 
* gnu/packages/linux.scm (linux-libre-5.16-version): Update to 5.16.20.
(linux-libre-5.16-pristine-source): Update hash.
 2022-04-14 10:22:54 -04:00
Leo Famulari
0a3fee824b
gnu: linux-libre 5.17: Update to 5.17.3. 
* gnu/packages/linux.scm (linux-libre-5.17-version): Update to 5.17.3.
(linux-libre-5.17-pristine-source): Update hash.
 2022-04-14 10:22:54 -04:00
Leo Famulari
aaf4b08c6b
gnu: Update linux-libre 5.17 configuration files. 
This option that adds new hardware support appeared after the 5.17 release.

* gnu/packages/aux-files/linux-libre/5.17-arm.conf,
gnu/packages/aux-files/linux-libre/5.17-arm64.conf,
gnu/packages/aux-files/linux-libre/5.17-i686.conf,
gnu/packages/aux-files/linux-libre/5.17-x86_64.conf: Enable support for Realtek
Ethernet switch chips.
 2022-04-14 10:22:54 -04:00
Mădălin Ionel Patrașcu
b0dd06bd0c
gnu: Add r-xcir. 
* gnu/packages/bioconductor.scm (r-xcir): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
 2022-04-14 14:53:17 +02:00
Ludovic Courtès
16372cb347
gnu: sundials: Remove input labels. 
* gnu/packages/maths.scm (sundials)[native-inputs, inputs]: Remove labels.
(sundials-openmpi)[inputs]: Remove labels.
 2022-04-14 14:48:21 +02:00
Ludovic Courtès
61bcd648ca
gnu: sundials: Update to 6.1.1. 
* gnu/packages/maths.scm (sundials): Update to 6.1.1.
[inputs]: Add PETSC.
(sundials-openmpi)[inputs]: Remove PETSC.
[arguments]: Remove now unnecessary flags.  Change "MPI_ENABLE" to "ENABLE_MPI".
 2022-04-14 14:48:21 +02:00
Ludovic Courtès
5f74169e8e
daemon: Support systemd-style socket activation. 
* nix/nix-daemon/guix-daemon.cc (SD_LISTEN_FDS_START): New macro.
(systemd_activation_sockets): New function.
(main): Use it.  Remove obsolete 'printMsg' call.
* doc/guix.texi (Invoking guix-daemon): Document socket activation.
 2022-04-14 14:48:20 +02:00
Ludovic Courtès
b9233cb9a8
publish: Support systemd-style socket activation. 
* guix/scripts/publish.scm (systemd-socket): New procedure.
(guix-publish): Add 'style' variable.  Adjust startup message depending
on whether STYLE is 'systemd.
* doc/guix.texi (Invoking guix publish): Mention socket activation.
 2022-04-14 14:48:20 +02:00
Ludovic Courtès
17c6d00b57
publish: Use SRFI-71 instead of SRFI-11. 
* guix/scripts/publish.scm (make-request-handler): Use 'let' instead of
'let-values'.
 2022-04-14 14:48:20 +02:00
Ludovic Courtès
1f82602153
gnu: guile-fibers@1.1: Support cross-compilation. 
Fixes <https://issues.guix.gnu.org/54793>.
Reported by Mathieu Othacehe <othacehe@gnu.org>.

* gnu/packages/guile-xyz.scm (guile-fibers-1.1)[arguments]: Add
'support-cross-compilation' phase.
 2022-04-14 14:48:20 +02:00
Ludovic Courtès
c9cded0955
style: Correctly read dots in pairs and improper lists. 
Until now dots were read as symbols.

* guix/scripts/style.scm (read-with-comments)[dot]: New variable.
[dot?, reverse/dot]: New procedures.
Use 'reverse/dot' instead of 'reverse' when reading lists.
* tests/style.scm ("read-with-comments: dot notation")
("((a . 1) (b . 2))", "(a b c . boom)"): New tests.
 2022-04-14 14:48:20 +02:00
Ricardo Wurmus
919cecd00b
gnu: r-illuminahumanmethylation450kanno-ilmn12-hg19: Move to annotation section. 
* gnu/packages/bioconductor.scm (r-illuminahumanmethylation450kanno-ilmn12-hg19):
Move this variable up to the annotation section.
 2022-04-14 13:38:30 +02:00
Ricardo Wurmus
03009f2a2b
gnu: r-snplocs-hsapiens-dbsnp144-grch37: Move to annotation section. 
* gnu/packages/bioconductor.scm (r-snplocs-hsapiens-dbsnp144-grch37): Move
this variable up to the annotation section.
 2022-04-14 13:37:23 +02:00
Ricardo Wurmus
c8a6e4abbc
gnu: r-chromvarmotifs: Move to (gnu packages bioinformatics). 
* gnu/packages/bioconductor.scm (r-chromvarmotifs): Move this variable from here...
* gnu/packages/bioinformatics.scm (r-chromvarmotifs): ...to here.
 2022-04-14 13:35:22 +02:00
Ricardo Wurmus
aafd0d2309
gnu: r-absseq: Move out of experiments section. 
* gnu/packages/bioconductor.scm (r-absseq): Move definition out of experiments
section.
 2022-04-14 13:34:11 +02:00
Ricardo Wurmus
ed3697c040
gnu: r-abarray: Move out of experiments section. 
* gnu/packages/bioconductor.scm (r-abarray): Move definition out of
experiments section.
 2022-04-14 13:32:52 +02:00
Ricardo Wurmus
67941709e2
gnu: r-aneufinder: Move to packages section. 
* gnu/packages/bioconductor.scm (r-aneufinder): Move this definition out of
the section for Bioconductor experiments packages.
 2022-04-14 13:31:33 +02:00
Mădălin Ionel Patrașcu
cab6657094
gnu: Add r-absseq. 
* gnu/packages/bioconductor.scm (r-absseq): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2022-04-14 13:29:48 +02:00
Mădălin Ionel Patrașcu
a436582124
gnu: Add r-abarray. 
* gnu/packages/bioconductor.scm (r-abarray): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2022-04-14 13:20:07 +02:00
Mădălin Ionel Patrașcu
1b2b1c30e2
gnu: Add r-acde. 
* gnu/packages/bioconductor.scm (r-acde): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2022-04-14 13:18:07 +02:00
Mădălin Ionel Patrașcu
dd9d26bce6
gnu: Add r-wppi. 
* gnu/packages/bioconductor.scm (r-wppi): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2022-04-14 12:47:24 +02:00
Mădălin Ionel Patrașcu
55be5fc400
gnu: Add r-acme. 
* gnu/packages/bioconductor.scm (r-acme): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2022-04-14 12:33:27 +02:00
Mădălin Ionel Patrașcu
08df30f232
gnu: Add r-acgh. 
* gnu/packages/bioconductor.scm (r-acgh): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2022-04-14 11:59:15 +02:00
Attila Lendvai
50046194a2
gnu: libfprint: Fix build, add python for the tests. 
* gnu/packages/freedesktop.scm (libfprint)[native-inputs]: Add python-minimal
as it's needed by the tests.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2022-04-14 11:54:11 +02:00