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136089 commits

Author SHA1 Message Date
Ricardo Wurmus
35c7407925
gnu: r-ropls: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-ropls): Update to 1.36.0.

Change-Id: I38f876b16f0757fb737e68dfdde414149325bf89
2024-05-08 12:53:34 +02:00
Ricardo Wurmus
dd2f713ad2
gnu: r-multidataset: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-multidataset): Update to 1.32.0.

Change-Id: I11186aaf5e7824b622ee077386fde04e8cc6d4f8
2024-05-08 12:53:34 +02:00
Ricardo Wurmus
542f2f6368
gnu: r-birewire: Update to 3.36.0.
* gnu/packages/bioconductor.scm (r-birewire): Update to 3.36.0.

Change-Id: I334dc128bbc21fb4b7561ffbd467f8fa8c5655bb
2024-05-08 12:53:34 +02:00
Ricardo Wurmus
1e41a6c5a2
gnu: r-rqc: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-rqc): Update to 1.38.0.

Change-Id: Ic0d16636a1d8b895f90488a53e5fb12e926aab96
2024-05-08 12:53:34 +02:00
Ricardo Wurmus
41a7ae9ec3
gnu: r-quasr: Update to 1.44.0.
* gnu/packages/bioconductor.scm (r-quasr): Update to 1.44.0.
[propagated-inputs]: Add r-txdbmaker.

Change-Id: I694b838314fd3b272c2b1e54462c01b8d7aa3db9
2024-05-08 12:53:34 +02:00
Ricardo Wurmus
df7d5ec7c9
gnu: r-rhisat2: Update to 1.20.0.
* gnu/packages/bioconductor.scm (r-rhisat2): Update to 1.20.0.
[propagated-inputs]: Remove r-genomicfeatures; add r-txdbmaker.

Change-Id: I529eb7b14bed764ee4c99840261111aa464ebee4
2024-05-08 12:53:34 +02:00
Ricardo Wurmus
d7eb538f98
gnu: r-sgseq: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-sgseq): Update to 1.38.0.

Change-Id: I0cff4621eab565b54ee90e400d716505ce3546a4
2024-05-08 12:53:34 +02:00
Ricardo Wurmus
5f6b7c1f6d
gnu: r-rbowtie: Update to 1.44.0.
* gnu/packages/bioconductor.scm (r-rbowtie): Update to 1.44.0.

Change-Id: If72dcf98d1e0807a662769f075783f5ab771ffa6
2024-05-08 12:53:34 +02:00
Ricardo Wurmus
54bbc4fb55
gnu: r-iclusterplus: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-iclusterplus): Update to 1.40.0.

Change-Id: I50d3ad0f0eb16f9c9c164e0123bf7aad6ca88e8b
2024-05-08 12:53:34 +02:00
Ricardo Wurmus
4130ff3f13
gnu: r-biocfilecache: Update to 2.12.0.
* gnu/packages/bioconductor.scm (r-biocfilecache): Update to 2.12.0.

Change-Id: I43c6a01c27f5da53c1f92a4bb60e82021b503f24
2024-05-08 12:53:34 +02:00
Ricardo Wurmus
56a0297e64
gnu: r-arrmnormalization: Update to 1.44.0.
* gnu/packages/bioconductor.scm (r-arrmnormalization): Update to 1.44.0.

Change-Id: I6764fb65b0180eff4cae6fed0ef34e6cd5ed455a
2024-05-08 12:53:33 +02:00
Ricardo Wurmus
f3e16115ba
gnu: r-progeny: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-progeny): Update to 1.26.0.

Change-Id: Ie4aa637d7579bf5f966aa48469ee9774b9be72eb
2024-05-08 12:53:33 +02:00
Ricardo Wurmus
33270b8f5b
gnu: r-rbowtie2: Update to 2.10.0.
* gnu/packages/bioconductor.scm (r-rbowtie2): Update to 2.10.0.

Change-Id: Ia0479b81f8fafec85967c3f040921265672da0bc
2024-05-08 12:53:33 +02:00
Ricardo Wurmus
11fa847d63
gnu: r-zfpkm: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-zfpkm): Update to 1.26.0.

Change-Id: Iaedb6614daf04de16a4a7f1ac5d62e2a886627db
2024-05-08 12:53:33 +02:00
Ricardo Wurmus
9932e631b4
gnu: r-zinbwave: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-zinbwave): Update to 1.26.0.

Change-Id: I0ca075c1d53c8637f096c3d5d37b8af82e913d7a
2024-05-08 12:53:33 +02:00
Ricardo Wurmus
0612b39e4a
gnu: r-webbioc: Update to 1.76.0.
* gnu/packages/bioconductor.scm (r-webbioc): Update to 1.76.0.

Change-Id: I15d7018f71115f9105ab8bcb375d0085acda5e27
2024-05-08 12:53:33 +02:00
Ricardo Wurmus
269d807b8b
gnu: r-widgettools: Update to 1.82.0.
* gnu/packages/bioconductor.scm (r-widgettools): Update to 1.82.0.

Change-Id: Ifbf93eaef653f353c07198d3ab492db0d48c2a5d
2024-05-08 12:53:33 +02:00
Ricardo Wurmus
772e6bd326
gnu: r-wiggleplotr: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-wiggleplotr): Update to 1.28.0.

Change-Id: I812e2117c9fc082e665a2d257a14d6825bd2d983
2024-05-08 12:53:33 +02:00
Ricardo Wurmus
4290e9c021
gnu: r-wrench: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-wrench): Update to 1.22.0.

Change-Id: Ic5b0bc0ca63f073b121041bb3779cd6440dadf22
2024-05-08 12:53:33 +02:00
Ricardo Wurmus
ee4ba2b6d7
gnu: r-wppi: Update to 1.12.0.
* gnu/packages/bioconductor.scm (r-wppi): Update to 1.12.0.

Change-Id: Ifb378d20553d74bfca3a3311e1139f8bccc79a8b
2024-05-08 12:53:33 +02:00
Ricardo Wurmus
649def40b8
gnu: r-xcms: Update to 4.2.0.
* gnu/packages/bioconductor.scm (r-xcms): Update to 4.2.0.
[propagated-inputs]: Remove r-multtest, r-plyr, r-rann, and r-robustbase; add r-jsonlite
and r-metabocoreutils.

Change-Id: I8ebcedc2c4b7fc073589c474de8a3ea52071d278
2024-05-08 12:53:33 +02:00
Ricardo Wurmus
218d7093e5
gnu: r-massspecwavelet: Update to 1.70.0.
* gnu/packages/bioconductor.scm (r-massspecwavelet): Update to 1.70.0.

Change-Id: I0c19c85365065a5918c9236b8789798edbd69431
2024-05-08 12:53:33 +02:00
Ricardo Wurmus
3d31071378
gnu: r-roar: Update to 1.40.0.
* gnu/packages/bioconductor.scm (r-roar): Update to 1.40.0.

Change-Id: I86b612f9a1d4715d22a30fd6dc3c564f53400bdb
2024-05-08 12:53:33 +02:00
Ricardo Wurmus
bf13473e7f
gnu: r-yarn: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-yarn): Update to 1.30.0.

Change-Id: Ibc82dc44f5f1b61b5adefaee2a16de1e159ff865
2024-05-08 12:53:33 +02:00
Ricardo Wurmus
e873fea1c1
gnu: r-quantro: Update to 1.38.0.
* gnu/packages/bioconductor.scm (r-quantro): Update to 1.38.0.

Change-Id: Ib9b1c373c0f7820c1944d49e6cdc9e0da30c752c
2024-05-08 12:53:33 +02:00
Ricardo Wurmus
67584d7d08
gnu: r-gcrma: Update to 2.76.0.
* gnu/packages/bioconductor.scm (r-gcrma): Update to 2.76.0.

Change-Id: I224f243340bed970d72a8186d1f286d6e87a339b
2024-05-08 12:53:33 +02:00
Ricardo Wurmus
f6f96b1e5d
gnu: r-yapsa: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-yapsa): Update to 1.30.0.

Change-Id: Iaf62b6d599e1a7e3cd3255877a9faf9c3d8b28c1
2024-05-08 12:53:33 +02:00
Ricardo Wurmus
78ca6efb7d
gnu: r-somaticsignatures: Update to 2.40.0.
* gnu/packages/bioconductor.scm (r-somaticsignatures): Update to 2.40.0.

Change-Id: I599c3b6a521a93dfa056d3ea42a27906360f4e92
2024-05-08 12:53:33 +02:00
Ricardo Wurmus
3458fcb7e0
gnu: r-gtrellis: Update to 1.36.0.
* gnu/packages/bioconductor.scm (r-gtrellis): Update to 1.36.0.

Change-Id: I3d0e77d8406b71adfcce754c0df5d82fbfa54d29
2024-05-08 12:53:33 +02:00
Ricardo Wurmus
e03461e6ab
gnu: r-yamss: Update to 1.30.0.
* gnu/packages/bioconductor.scm (r-yamss): Update to 1.30.0.

Change-Id: Id552217ad9a7a8273e38face0f016c410b6d2f25
2024-05-08 12:53:33 +02:00
Ricardo Wurmus
1815859a6b
gnu: r-ebimage: Update to 4.46.0.
* gnu/packages/bioconductor.scm (r-ebimage): Update to 4.46.0.

Change-Id: I18b62127bbd91d4c443a29a376506ffb95bdf74f
2024-05-08 12:53:33 +02:00
Ricardo Wurmus
5b0edd7546
gnu: r-aucell: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-aucell): Update to 1.26.0.
[propagated-inputs]: Remove r-shiny.

Change-Id: I258ef1c0dbe0b3039cccc52b45bcd279e13448eb
2024-05-08 12:53:33 +02:00
Ricardo Wurmus
78668dc53f
gnu: r-allelicimbalance: Update to 1.42.0.
* gnu/packages/bioconductor.scm (r-allelicimbalance): Update to 1.42.0.

Change-Id: I2317a273e56cec77dfc2904a9f4b394954b4452c
2024-05-08 12:53:33 +02:00
Ricardo Wurmus
69baa29212
gnu: r-annotationtools: Update to 1.78.0.
* gnu/packages/bioconductor.scm (r-annotationtools): Update to 1.78.0.

Change-Id: I03cfc05951d2385d129299857ab33dca14b9a09c
2024-05-08 12:53:32 +02:00
Ricardo Wurmus
af398adbe3
gnu: r-gofuncr: Update to 1.24.0.
* gnu/packages/bioconductor.scm (r-gofuncr): Update to 1.24.0.

Change-Id: I3a9519ce281638bded1674efdcedee2792653edd
2024-05-08 12:53:32 +02:00
Ricardo Wurmus
f5d18100fe
gnu: r-atacseqqc: Update to 1.28.0.
* gnu/packages/bioconductor.scm (r-atacseqqc): Update to 1.28.0.
[propagated-inputs]: Add r-biocparallel.

Change-Id: Ie8b4dfaeb8d2dace4222edcc453206c92038ccf3
2024-05-08 12:53:32 +02:00
Ricardo Wurmus
c05269694a
gnu: r-genomicscores: Update to 2.16.0.
* gnu/packages/bioconductor.scm (r-genomicscores): Update to 2.16.0.

Change-Id: I5e16fcbdb0539d1549703c5613637a45dd394f19
2024-05-08 12:53:32 +02:00
Ricardo Wurmus
a0f8d68eb9
gnu: r-motifstack: Update to 1.48.0.
* gnu/packages/bioconductor.scm (r-motifstack): Update to 1.48.0.

Change-Id: I3f5753d9c6b6d80f813745ea784b50d805ea9a5b
2024-05-08 12:53:32 +02:00
Ricardo Wurmus
820be3c706
gnu: r-motifbreakr: Update to 2.18.0.
* gnu/packages/bioconductor.scm (r-motifbreakr): Update to 2.18.0.
[propagated-inputs]: Add r-pwalign.

Change-Id: If6d1a32ef6c413a2c5f9e1b9facb86535474f2f0
2024-05-08 12:53:32 +02:00
Ricardo Wurmus
b367f31127
gnu: r-motifdb: Update to 1.46.0.
* gnu/packages/bioconductor.scm (r-motifdb): Update to 1.46.0.

Change-Id: I59ea594a6f60475130842a9f1184fc2347610ca4
2024-05-08 12:53:32 +02:00
Ricardo Wurmus
f51df09015
gnu: r-rgadem: Update to 2.52.0.
* gnu/packages/bioconductor.scm (r-rgadem): Update to 2.52.0.

Change-Id: Icb79e5feac3f3d62236ddc2a11b69cdcd41e2adb
2024-05-08 12:53:32 +02:00
Ricardo Wurmus
6681ecd758
gnu: r-bacon: Update to 1.32.0.
* gnu/packages/bioconductor.scm (r-bacon): Update to 1.32.0.

Change-Id: I7205d0816ada2cd36892f8c60bc51745d8bb5b3c
2024-05-08 12:53:32 +02:00
Ricardo Wurmus
4bff48490a
gnu: r-abseqr: Update to 1.22.0.
* gnu/packages/bioconductor.scm (r-abseqr): Update to 1.22.0.

Change-Id: I0dccf1f24b03770773e7c4bf46a290091ecf4639
2024-05-08 12:53:32 +02:00
Ricardo Wurmus
31a2196712
gnu: r-a4: Update to 1.52.0.
* gnu/packages/bioconductor.scm (r-a4): Update to 1.52.0.

Change-Id: I9d5e462c3a85085e3d4e6a6e029facb15ecc75a8
2024-05-08 12:53:32 +02:00
Ricardo Wurmus
e99c0cb450
gnu: r-a4base: Update to 1.52.0.
* gnu/packages/bioconductor.scm (r-a4base): Update to 1.52.0.

Change-Id: Ib453338c9f5120152401b63316875563dcfa8a6f
2024-05-08 12:53:32 +02:00
Ricardo Wurmus
316a754148
gnu: r-a4reporting: Update to 1.52.0.
* gnu/packages/bioconductor.scm (r-a4reporting): Update to 1.52.0.

Change-Id: Ibbf221deb0fe3a25832e028d4428daca86638aae
2024-05-08 12:53:32 +02:00
Ricardo Wurmus
fe2386ed67
gnu: r-a4preproc: Update to 1.52.0.
* gnu/packages/bioconductor.scm (r-a4preproc): Update to 1.52.0.

Change-Id: If57e045b95a93fc6f3219563c14cb75d8b7def09
2024-05-08 12:53:32 +02:00
Ricardo Wurmus
f76b77319c
gnu: r-a4classif: Update to 1.52.0.
* gnu/packages/bioconductor.scm (r-a4classif): Update to 1.52.0.

Change-Id: I80ac898550980c35b035fdb1d9830107eef81fbe
2024-05-08 12:53:32 +02:00
Ricardo Wurmus
2de96b1cac
gnu: r-a4core: Update to 1.52.0.
* gnu/packages/bioconductor.scm (r-a4core): Update to 1.52.0.

Change-Id: Ic773aab10e8d25897b3d656ef97302ccc6c4e585
2024-05-08 12:53:32 +02:00
Ricardo Wurmus
42069fa4f3
gnu: r-annaffy: Update to 1.76.0.
* gnu/packages/bioconductor.scm (r-annaffy): Update to 1.76.0.

Change-Id: Id4e02486fc59d4a1522d2a5ad4bdcb952656bb35
2024-05-08 12:53:32 +02:00