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Author SHA1 Message Date
Tobias Geerinckx-Rice
ac6f1c777a
gnu: facter: Update to 4.0.26. 
* gnu/packages/admin.scm (facter): Update to 4.0.26.
 2020-06-14 00:05:08 +02:00
Tobias Geerinckx-Rice
d22dc5f728
gnu: rust-tokio: Update to 0.2.21. 
* gnu/packages/crates-io.scm (rust-tokio): Update to 0.2.21.
 2020-06-14 00:05:07 +02:00
Tobias Geerinckx-Rice
33678aee91
gnu: rust-serde-bytes: Fix typo in synopsis. 
* gnu/packages/crates-io.scm (rust-serde-bytes)[synopsis]: Remove ‘of’.
 2020-06-14 00:05:07 +02:00
Tobias Geerinckx-Rice
449bac5b4d
gnu: rust-serde-bytes: Update to 0.11.5. 
* gnu/packages/crates-io.scm (rust-serde-bytes): Update to 0.11.5.
 2020-06-14 00:05:07 +02:00
Ricardo Wurmus
ea7882b2e3
gnu: alsa-modular-synth: Hide default GCC. 
* gnu/packages/audio.scm (alsa-modular-synth)[native-inputs]: Distinguish
GCC-5.
[arguments]: Add build phase "hide-default-gcc".
 2020-06-13 23:50:02 +02:00
Ricardo Wurmus
401e6ccb12
gnu: alsa-modular-synth: Add patch to fix vocoder build error. 
* gnu/packages/patches/alsa-modular-synth-fix-vocoder.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/audio.scm (alsa-modular-synth)[source]: Add it.
 2020-06-13 23:50:01 +02:00
Marius Bakke
29961439aa
gnu: check@0.12: Do not inherit replacements from check. 
* gnu/packages/check.scm (check-0.12): Use INHERIT instead of PACKAGE/INHERIT.
 2020-06-13 23:29:22 +02:00
Marius Bakke
cce6b76416
gnu: libnet: Update home page. 
* gnu/packages/networking.scm (libnet)[home-page]: Adjust to current, as
referred to from the previous.
 2020-06-13 23:29:22 +02:00
Marius Bakke
41cb238281
gnu: libnet: Update to 1.2. 
* gnu/packages/networking.scm (libnet): Update to 1.2.
[source]: Switch to URL-FETCH.
[arguments]: Remove chdir phase.
[native-inputs]: Remove AUTOCONF, AUTOMAKE, and LIBTOOL.  Add PERL.
 2020-06-13 23:29:21 +02:00
Marius Bakke
dd61cd85f1
gnu: jucipp: Build with Clang 10. 
* gnu/packages/text-editors.scm (jucipp)[inputs]: Change from CLANG to CLANG-10.
 2020-06-13 23:29:21 +02:00
Marius Bakke
4723766b93
gnu: ghc-regex-pcre-builtin: Update home page. 
* gnu/packages/haskell-xyz.scm (ghc-regex-pcre-builtin)[home-page]: Set to the
correct home page, not the alternative 'ghc-regex-pcre' library.
 2020-06-13 23:29:21 +02:00
Marius Bakke
1a6d0d8c2d
gnu: perl-net-dns-resolver-programmable: Remove "v" prefix from version string. 
* gnu/packages/networking.scm (perl-net-dns-resolver-programmable)[version]:
Remove "v" prefix.
[source](uri): Adjust accordingly.
 2020-06-13 23:29:21 +02:00
Marius Bakke
8ab70bae52
Merge branch 'staging' 2020-06-13 22:52:25 +02:00
Ricardo Wurmus
9bc516bada
gnu: Add r-pcatools. 
* gnu/packages/bioconductor.scm (r-pcatools): New variable.
 2020-06-13 22:35:29 +02:00
Ricardo Wurmus
e8521f0b95
gnu: libnode: Delete unused phase. 
This is a follow-up to commit bb310a1976.

* gnu/packages/node.scm (libnode)[arguments]: Delete phase
"patch-npm-shebang".
 2020-06-13 20:04:51 +02:00
Ekaitz Zarraga
2c74e87079
gnu: Add meshlab. 
* gnu/packages/engineering.scm (meshlab): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2020-06-13 19:16:14 +02:00
Ludovic Courtès
ff30860b63
gnu: perf: Set 'CC'. 
* gnu/packages/linux.scm (perf)[arguments]: Add "CC=gcc" to #:make-flags.
This fixes a (harmless?) error message during the 'configure' phase.
 2020-06-13 19:16:14 +02:00
Ludovic Courtès
221a104248
gnu: perf: Restore use of dependencies. 
* gnu/packages/linux.scm (perf)[arguments]: Remove C_INCLUDE_PATH from
 #:make-flags.  It is no longer needed since the switch to C_INCLUDE_PATH
in 2073b55e6b and would prevent
dependencies from being found.
 2020-06-13 19:16:14 +02:00
Danny Milosavljevic
1eec6b0c01
gnu: guile-sqlite3: Update to 0.1.2. 
* gnu/packages/guile.scm (guile-sqlite3): Update to 0.1.2.
 2020-06-13 17:16:03 +02:00
Ricardo Wurmus
2f38e38fb5
Revert "gnu: node: Build shared library." 
This reverts commit f9311eaa7c.
Adding "--shared" replaces the executable with the shared library, breaking
all users of the nodejs executable.
 2020-06-13 17:02:26 +02:00
Ricardo Wurmus
e602e7f271
gnu: r-v8: Use libnode instead of node. 
* gnu/packages/cran.scm (r-v8)[inputs]: Replace node with libnode.
 2020-06-13 17:02:26 +02:00
Ricardo Wurmus
bb310a1976
gnu: Add libnode. 
* gnu/packages/node.scm (libnode): New variable.
 2020-06-13 17:02:26 +02:00
Mathieu Othacehe
4a04d49c2e
image: Remove 'maybe-with-target'. 
* gnu/system/image.scm (maybe-with-target): Remove,
(system-image): adapt accordingly.
 2020-06-13 16:58:57 +02:00
Mathieu Othacehe
478d1270ce
install: final: Add some logging. 
* gnu/installer/final.scm (umount-cow-store): Add some logging.
 2020-06-13 15:21:20 +02:00
Mathieu Othacehe
f292d4719d
image: Add 'target' support. 
* gnu/image.scm (<image>)[target]: New field,
(image-target): new public method.
* gnu/system/image.scm (hurd-disk-image): Set "i586-pc-gnu" as image 'target'
field,
(maybe-with-target): new procedure,
(system-image): honor image 'target' field using the above procedure.
 2020-06-13 15:20:52 +02:00
Jan (janneke) Nieuwenhuizen
7ca533c723
image: Make 'find-image' non-monadic. 
* gnu/system/image.scm (find-image): Make non-monadic.  Add 'target'
parameter.
* gnu/tests/install.scm (run-install): Update caller,
passing (%current-target-system).
* guix/scripts/system.scm (perform-action): Likewise.
 2020-06-13 15:03:55 +02:00
Christopher Baines
3857aba7ab
gnome: gnome-desktop: Add bubblewrap as an input. 
This is expected to be available, oddly as libseccomp is available.  These
changes fix thumbnails for Nautilus.

* gnu/packages/gnome.scm (gnome-desktop)[arguments]: Add 'patch-bubblewrap
phase.
[inputs]: Add bubblewrap.
 2020-06-13 12:02:13 +01:00
Michael Rohleder
e51175f686
gnu: emacs-debbugs: Update to 0.23. 
* gnu/packages/emacs-xyz.scm (emacs-debbugs): Update to 0.23.

Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
 2020-06-13 17:19:21 +08:00
Jan (janneke) Nieuwenhuizen
7304cb0a23
services: hurd: Remove deprecated 'hurd-getty-service' wrapper. 
* gnu/services/hurd.scm (hurd-getty-service): Remove.
 2020-06-13 10:04:51 +02:00
Jan (janneke) Nieuwenhuizen
60fdd9e389
system: hurd: Remove 'cross-hurd-image' hack. 
The initial

    guix build -f gnu/system/hurd.scm

hack has been superseded by regular guix system (cross) build.

* gnu/system/hurd.scm (compile-manifest, cross-hurd-image): Remove.
 2020-06-13 09:11:47 +02:00
Jan (janneke) Nieuwenhuizen
edbc067138
system: bare-hurd.tmpl: Add openssh-sans-x client and service. 
* gnu/system/examples/bare-hurd.tmpl (%hurd-os)[packages]: Add openssh-sans-x.
[services]: Add openssh-service.  Add example usage.
 2020-06-13 09:11:47 +02:00
Ricardo Wurmus
9ae4bd0b77
gnu: r-mzr: Update to 2.22.0. 
* gnu/packages/bioinformatics.scm (r-mzr): Update to 2.22.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:20:02 +02:00
Ricardo Wurmus
6b9e3b92c4
gnu: r-biodist: Update to 1.60.0. 
* gnu/packages/bioconductor.scm (r-biodist): Update to 1.60.0.
 2020-06-13 01:20:02 +02:00
Ricardo Wurmus
6a88291d1a
gnu: r-biocworkflowtools: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-biocworkflowtools): Update to 1.14.0.
 2020-06-13 01:20:02 +02:00
Ricardo Wurmus
723fa00d11
gnu: r-biocset: Update to 1.2.1. 
* gnu/packages/bioconductor.scm (r-biocset): Update to 1.2.1.
[native-inputs]: Add r-knitr.
 2020-06-13 01:20:02 +02:00
Ricardo Wurmus
1759a13d6e
gnu: r-biocpkgtools: Update to 1.6.0. 
* gnu/packages/bioconductor.scm (r-biocpkgtools): Update to 1.6.0.
 2020-06-13 01:20:01 +02:00
Ricardo Wurmus
132abe5fcc
gnu: r-biocor: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-biocor): Update to 1.12.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:20:01 +02:00
Ricardo Wurmus
1c51821593
gnu: r-bioconcotk: Update to 1.8.0. 
* gnu/packages/bioconductor.scm (r-bioconcotk): Update to 1.8.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:20:01 +02:00
Ricardo Wurmus
4091eae2bc
gnu: r-multiassayexperiment: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-multiassayexperiment): Update to 1.14.0.
 2020-06-13 01:20:01 +02:00
Ricardo Wurmus
b56a3462ad
gnu: r-experimenthub: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-experimenthub): Update to 1.14.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:20:01 +02:00
Ricardo Wurmus
543c63f2ae
gnu: r-biocgraph: Update to 1.50.0. 
* gnu/packages/bioconductor.scm (r-biocgraph): Update to 1.50.0.
 2020-06-13 01:20:01 +02:00
Ricardo Wurmus
8b71b14158
gnu: r-bioccasestudies: Update to 1.50.0. 
* gnu/packages/bioconductor.scm (r-bioccasestudies): Update to 1.50.0.
 2020-06-13 01:20:01 +02:00
Ricardo Wurmus
a74a427bd8
gnu: r-ebarrays: Update to 2.52.0. 
* gnu/packages/bioconductor.scm (r-ebarrays): Update to 2.52.0.
 2020-06-13 01:20:01 +02:00
Ricardo Wurmus
affb4ab351
gnu: r-reactomepa: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-reactomepa): Update to 1.32.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:20:01 +02:00
Ricardo Wurmus
29b1702799
gnu: r-graphite: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-graphite): Update to 1.34.0.
 2020-06-13 01:20:01 +02:00
Ricardo Wurmus
e09ca033f4
gnu: r-biobroom: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-biobroom): Update to 1.20.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:20:01 +02:00
Ricardo Wurmus
c8cbde9ff6
gnu: r-bioassayr: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-bioassayr): Update to 1.26.0.
 2020-06-13 01:20:01 +02:00
Ricardo Wurmus
06908a73fc
gnu: r-chemminer: Update to 3.40.0. 
* gnu/packages/bioconductor.scm (r-chemminer): Update to 3.40.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:20:01 +02:00
Ricardo Wurmus
d0badcc180
gnu: r-bigpint: Update to 1.4.0. 
* gnu/packages/bioconductor.scm (r-bigpint): Update to 1.4.0.
[propagated-inputs]: Add r-delayedarray and r-summarizedexperiment.
 2020-06-13 01:20:00 +02:00
Ricardo Wurmus
eef9c99cd8
gnu: r-bigmemoryextras: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-bigmemoryextras): Update to 1.36.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:20:00 +02:00
Ricardo Wurmus
f31edb0191
gnu: r-biggr: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-biggr): Update to 1.24.0.
 2020-06-13 01:20:00 +02:00
Ricardo Wurmus
3116998610
gnu: r-hyperdraw: Update to 1.40.0. 
* gnu/packages/bioconductor.scm (r-hyperdraw): Update to 1.40.0.
 2020-06-13 01:20:00 +02:00
Ricardo Wurmus
0ff724616b
gnu: r-hypergraph: Update to 1.60.0. 
* gnu/packages/bioconductor.scm (r-hypergraph): Update to 1.60.0.
 2020-06-13 01:20:00 +02:00
Ricardo Wurmus
d65bdbb2cb
gnu: r-rsbml: Update to 2.46.0. 
* gnu/packages/bioconductor.scm (r-rsbml): Update to 2.46.0.
 2020-06-13 01:20:00 +02:00
Ricardo Wurmus
a54fd40994
gnu: r-bifet: Update to 1.8.0. 
* gnu/packages/bioconductor.scm (r-bifet): Update to 1.8.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:20:00 +02:00
Ricardo Wurmus
7642517336
gnu: r-bicare: Update to 1.46.0. 
* gnu/packages/bioconductor.scm (r-bicare): Update to 1.46.0.
 2020-06-13 01:20:00 +02:00
Ricardo Wurmus
2415576ecb
gnu: r-bhc: Update to 1.40.0. 
* gnu/packages/bioconductor.scm (r-bhc): Update to 1.40.0.
 2020-06-13 01:20:00 +02:00
Ricardo Wurmus
de91f15a74
gnu: r-bgx: Update to 1.54.0. 
* gnu/packages/bioconductor.scm (r-bgx): Update to 1.54.0.
 2020-06-13 01:20:00 +02:00
Ricardo Wurmus
296992be08
gnu: r-bgmix: Update to 1.48.0. 
* gnu/packages/bioconductor.scm (r-bgmix): Update to 1.48.0.
 2020-06-13 01:20:00 +02:00
Ricardo Wurmus
a9148d0686
gnu: r-unifiedwmwqpcr: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-unifiedwmwqpcr): Update to 1.24.0.
 2020-06-13 01:20:00 +02:00
Ricardo Wurmus
518050a75b
gnu: r-htqpcr: Update to 1.42.0. 
* gnu/packages/bioconductor.scm (r-htqpcr): Update to 1.42.0.
 2020-06-13 01:19:59 +02:00
Ricardo Wurmus
fbbaf5ae64
gnu: r-variancepartition: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-variancepartition): Update to 1.18.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:59 +02:00
Ricardo Wurmus
41f7fe4aa9
gnu: r-variantfiltering: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-variantfiltering): Update to 1.24.0.
 2020-06-13 01:19:59 +02:00
Ricardo Wurmus
49dd504192
gnu: r-timeseriesexperiment: Update to 1.6.0. 
* gnu/packages/bioconductor.scm (r-timeseriesexperiment): Update to 1.6.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:59 +02:00
Ricardo Wurmus
12b255f213
gnu: r-wavcluster: Update to 2.22.0. 
* gnu/packages/bioconductor.scm (r-wavcluster): Update to 2.22.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:59 +02:00
Ricardo Wurmus
efb44ebca4
gnu: r-reqon: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-reqon): Update to 1.34.0.
 2020-06-13 01:19:59 +02:00
Ricardo Wurmus
83b7625cae
gnu: r-seqbias: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-seqbias): Update to 1.36.0.
 2020-06-13 01:19:59 +02:00
Ricardo Wurmus
8112796db1
gnu: r-bigmelon: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-bigmelon): Update to 1.14.0.
 2020-06-13 01:19:59 +02:00
Ricardo Wurmus
f4954b0b57
gnu: r-gdsfmt: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-gdsfmt): Update to 1.24.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:59 +02:00
Ricardo Wurmus
939ace9624
gnu: r-watermelon: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-watermelon): Update to 1.32.0.
 2020-06-13 01:19:59 +02:00
Ricardo Wurmus
cad8a5099a
gnu: r-roc: Update to 1.64.0. 
* gnu/packages/bioconductor.scm (r-roc): Update to 1.64.0.
 2020-06-13 01:19:59 +02:00
Ricardo Wurmus
b32808831c
gnu: r-genie3: Update to 1.10.0. 
* gnu/packages/bioconductor.scm (r-genie3): Update to 1.10.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:59 +02:00
Ricardo Wurmus
e677c9b501
gnu: r-cicero: Update to 1.6.0. 
* gnu/packages/bioconductor.scm (r-cicero): Update to 1.6.0.
 2020-06-13 01:19:58 +02:00
Ricardo Wurmus
93235b1eb3
gnu: r-rcistarget: Update to 1.8.0. 
* gnu/packages/bioconductor.scm (r-rcistarget): Update to 1.8.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:58 +02:00
Ricardo Wurmus
af66e35d31
gnu: r-depecher: Update to 1.4.0. 
* gnu/packages/bioconductor.scm (r-depecher): Update to 1.4.0.
 2020-06-13 01:19:58 +02:00
Ricardo Wurmus
7bec32fe53
gnu: r-mixomics: Update to 6.12.1. 
* gnu/packages/bioconductor.scm (r-mixomics): Update to 6.12.1.
 2020-06-13 01:19:58 +02:00
Ricardo Wurmus
32bd0295c8
gnu: r-flowsom: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-flowsom): Update to 1.20.0.
 2020-06-13 01:19:58 +02:00
Ricardo Wurmus
8d5a83b7c6
gnu: r-cytoml: Update to 2.0.0. 
* gnu/packages/bioconductor.scm (r-cytoml): Update to 2.0.0.
[propagated-inputs]: Remove r-ncdfflow; add r-rcpparmadillo, r-rhdf5lib, and
r-tibble.
 2020-06-13 01:19:58 +02:00
Ricardo Wurmus
8f5e16742d
gnu: r-opencyto: Update to 2.0.0. 
* gnu/packages/bioconductor.scm (r-opencyto): Update to 2.0.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:58 +02:00
Ricardo Wurmus
372caae6a9
gnu: r-flowstats: Update to 4.0.0. 
* gnu/packages/bioconductor.scm (r-flowstats): Update to 4.0.0.
 2020-06-13 01:19:58 +02:00
Ricardo Wurmus
a9af09df17
gnu: r-flowworkspace: Update to 4.0.3. 
* gnu/packages/bioconductor.scm (r-flowworkspace): Update to 4.0.3.
[propagated-inputs]: Remove r-flowviz, r-gridextra, and r-rcolorbrewer; add
r-ggplot2, r-rcpparmadillo, r-rhdf5lib, and r-xml.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:58 +02:00
Ricardo Wurmus
bafade83c1
gnu: r-rprotobuflib: Update to 2.0.0. 
* gnu/packages/bioconductor.scm (r-rprotobuflib): Update to 2.0.0.
[arguments]: Adjust phase "unpack-bundled-sources".
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:58 +02:00
Ricardo Wurmus
b347d6c32b
gnu: r-flowclust: Update to 3.26.0. 
* gnu/packages/bioconductor.scm (r-flowclust): Update to 3.26.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:58 +02:00
Ricardo Wurmus
062789b87a
gnu: r-flowviz: Update to 1.52.0. 
* gnu/packages/bioconductor.scm (r-flowviz): Update to 1.52.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:58 +02:00
Ricardo Wurmus
3407dfa61f
gnu: r-ggcyto: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-ggcyto): Update to 1.16.0.
[propagated-inputs]: Add r-hexbin.
 2020-06-13 01:19:58 +02:00
Ricardo Wurmus
631b12ca71
gnu: r-ncdfflow: Update to 2.34.0. 
* gnu/packages/bioconductor.scm (r-ncdfflow): Update to 2.34.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:57 +02:00
Ricardo Wurmus
76b163d616
gnu: r-flowmeans: Update to 1.48.0. 
* gnu/packages/bioconductor.scm (r-flowmeans): Update to 1.48.0.
 2020-06-13 01:19:57 +02:00
Ricardo Wurmus
faff2de0da
gnu: r-flowcore: Update to 2.0.1. 
* gnu/packages/bioconductor.scm (r-flowcore): Update to 2.0.1.
[propagated-inputs]: Add r-rcpparmadillo and r-rprotobuflib.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:57 +02:00
Ricardo Wurmus
3c73d7c5e4
gnu: r-cytolib: Update to 2.0.3. 
* gnu/packages/bioconductor.scm (r-cytolib): Update to 2.0.3.
[inputs]: Add zlib.
[propagated-inputs]: Add r-bh, r-rcpp, r-rcpparmadillo, r-rcppparallel,
r-rhdf5lib, and r-rprotobuflib.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:57 +02:00
Ricardo Wurmus
0c2573e7f1
gnu: r-consensusclusterplus: Update to 1.52.0. 
* gnu/packages/bioconductor.scm (r-consensusclusterplus): Update to 1.52.0.
 2020-06-13 01:19:57 +02:00
Ricardo Wurmus
6954950f4a
gnu: r-flowutils: Update to 1.52.0. 
* gnu/packages/bioconductor.scm (r-flowutils): Update to 1.52.0.
 2020-06-13 01:19:57 +02:00
Ricardo Wurmus
5d63f69be9
gnu: r-rsubread: Update to 2.2.2. 
* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.2.2.
[propagated-inputs]: Add r-matrix.
 2020-06-13 01:19:57 +02:00
Ricardo Wurmus
5ca991bff9
gnu: r-annotatr: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-annotatr): Update to 1.14.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:57 +02:00
Ricardo Wurmus
8b6f26e634
gnu: r-biosigner: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-biosigner): Update to 1.16.0.
 2020-06-13 01:19:57 +02:00
Ricardo Wurmus
77334168cf
gnu: r-ropls: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-ropls): Update to 1.20.0.
 2020-06-13 01:19:57 +02:00
Ricardo Wurmus
905bbb13da
gnu: r-multidataset: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-multidataset): Update to 1.16.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:57 +02:00
Ricardo Wurmus
cb941ca06d
gnu: r-birta: Update to 1.31.0. 
* gnu/packages/bioconductor.scm (r-birta): Update to 1.31.0.
 2020-06-13 01:19:57 +02:00
Ricardo Wurmus
f50609aba5
gnu: r-birewire: Update to 3.20.0. 
* gnu/packages/bioconductor.scm (r-birewire): Update to 3.20.0.
 2020-06-13 01:19:56 +02:00
Ricardo Wurmus
1c5360ac3d
gnu: r-rqc: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-rqc): Update to 1.22.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:56 +02:00
Ricardo Wurmus
a84abf434d
gnu: r-quasr: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-quasr): Update to 1.28.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:56 +02:00
Ricardo Wurmus
2aff2724ef
gnu: r-rhisat2: Update to 1.4.0. 
* gnu/packages/bioconductor.scm (r-rhisat2): Update to 1.4.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:56 +02:00
Ricardo Wurmus
201902bc05
gnu: r-sgseq: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-sgseq): Update to 1.22.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:56 +02:00
Ricardo Wurmus
568c3929b6
gnu: r-rbowtie: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-rbowtie): Update to 1.28.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:56 +02:00
Ricardo Wurmus
ca8d80c90c
gnu: r-iclusterplus: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-iclusterplus): Update to 1.24.0.
 2020-06-13 01:19:56 +02:00
Ricardo Wurmus
173844fc75
gnu: r-biocfilecache: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-biocfilecache): Update to 1.12.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:56 +02:00
Ricardo Wurmus
989b7bb625
gnu: r-arrmnormalization: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-arrmnormalization): Update to 1.28.0.
 2020-06-13 01:19:56 +02:00
Ricardo Wurmus
8e5933a8e4
gnu: r-progeny: Update to 1.10.0. 
* gnu/packages/bioconductor.scm (r-progeny): Update to 1.10.0.
[propagated-inputs]: Add r-dplyr, r-ggplot2, r-ggrepel, r-gridextra, and
r-tidyr.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:56 +02:00
Ricardo Wurmus
297854e682
gnu: r-rbowtie2: Update to 1.10.0. 
* gnu/packages/bioconductor.scm (r-rbowtie2): Update to 1.10.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:56 +02:00
Ricardo Wurmus
8fdca89b56
gnu: r-zfpkm: Update to 1.10.0. 
* gnu/packages/bioconductor.scm (r-zfpkm): Update to 1.10.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:56 +02:00
Ricardo Wurmus
620cc4d976
gnu: r-webbioc: Update to 1.60.0. 
* gnu/packages/bioconductor.scm (r-webbioc): Update to 1.60.0.
 2020-06-13 01:19:56 +02:00
Ricardo Wurmus
08c4d31400
gnu: r-widgettools: Update to 1.66.0. 
* gnu/packages/bioconductor.scm (r-widgettools): Update to 1.66.0.
 2020-06-13 01:19:56 +02:00
Ricardo Wurmus
ee0f746088
gnu: r-wiggleplotr: Update to 1.12.0. 
* gnu/packages/bioconductor.scm (r-wiggleplotr): Update to 1.12.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:55 +02:00
Ricardo Wurmus
996f07b591
gnu: r-wrench: Update to 1.6.0. 
* gnu/packages/bioconductor.scm (r-wrench): Update to 1.6.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:55 +02:00
Ricardo Wurmus
ff9f179a0c
gnu: r-xcms: Update to 3.10.1. 
* gnu/packages/bioconductor.scm (r-xcms): Update to 3.10.1.
[propagated-inputs]: Remove r-multtest; add r-summarizedexperiment.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:55 +02:00
Ricardo Wurmus
11cf2d7bb7
gnu: r-massspecwavelet: Update to 1.54.0. 
* gnu/packages/bioconductor.scm (r-massspecwavelet): Update to 1.54.0.
 2020-06-13 01:19:55 +02:00
Ricardo Wurmus
bcd06bdbff
gnu: r-xbseq: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-xbseq): Update to 1.20.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:55 +02:00
Ricardo Wurmus
1ec10e1987
gnu: r-roar: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-roar): Update to 1.24.0.
 2020-06-13 01:19:55 +02:00
Ricardo Wurmus
a37a6ffb2d
gnu: r-yarn: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-yarn): Update to 1.14.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:55 +02:00
Ricardo Wurmus
70d90ae76d
gnu: r-quantro: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-quantro): Update to 1.22.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:55 +02:00
Ricardo Wurmus
761c9427bc
gnu: r-yaqcaffy: Update to 1.48.0. 
* gnu/packages/bioconductor.scm (r-yaqcaffy): Update to 1.48.0.
 2020-06-13 01:19:55 +02:00
Ricardo Wurmus
9ce80f9356
gnu: r-simpleaffy: Update to 2.64.0. 
* gnu/packages/bioconductor.scm (r-simpleaffy): Update to 2.64.0.
 2020-06-13 01:19:55 +02:00
Ricardo Wurmus
f0439a1767
gnu: r-gcrma: Update to 2.60.0. 
* gnu/packages/bioconductor.scm (r-gcrma): Update to 2.60.0.
 2020-06-13 01:19:55 +02:00
Ricardo Wurmus
8a5abc62d5
gnu: r-yapsa: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-yapsa): Update to 1.14.0.
[propagated-inputs]: Add r-biostrings, r-bsgenome-hsapiens-ucsc-hg19,
r-doparallel, r-dplyr, r-ggbeeswarm, r-magrittr, and r-pracma.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:55 +02:00
Ricardo Wurmus
63c14717e3
gnu: r-somaticsignatures: Update to 2.24.0. 
* gnu/packages/bioconductor.scm (r-somaticsignatures): Update to 2.24.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:55 +02:00
Ricardo Wurmus
a471def062
gnu: r-gtrellis: Update to 1.20.1. 
* gnu/packages/bioconductor.scm (r-gtrellis): Update to 1.20.1.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:54 +02:00
Ricardo Wurmus
6e397aad32
gnu: r-yamss: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-yamss): Update to 1.14.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:54 +02:00
Ricardo Wurmus
4eccf8e5e5
gnu: r-ebimage: Update to 4.30.0. 
* gnu/packages/bioconductor.scm (r-ebimage): Update to 4.30.0.
 2020-06-13 01:19:54 +02:00
Ricardo Wurmus
e059ab2503
gnu: r-aucell: Update to 1.10.0. 
* gnu/packages/bioconductor.scm (r-aucell): Update to 1.10.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:54 +02:00
Ricardo Wurmus
6314938884
gnu: r-allelicimbalance: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-allelicimbalance): Update to 1.26.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:54 +02:00
Ricardo Wurmus
231898d5b9
gnu: r-annotationtools: Update to 1.62.0. 
* gnu/packages/bioconductor.scm (r-annotationtools): Update to 1.62.0.
 2020-06-13 01:19:54 +02:00
Ricardo Wurmus
7866994c03
gnu: r-annotationfuncs: Update to 1.38.0. 
* gnu/packages/bioconductor.scm (r-annotationfuncs): Update to 1.38.0.
 2020-06-13 01:19:54 +02:00
Ricardo Wurmus
6a65ac1537
gnu: r-abaenrichment: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-abaenrichment): Update to 1.18.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:54 +02:00
Ricardo Wurmus
19b39ac579
gnu: r-gofuncr: Update to 1.8.0. 
* gnu/packages/bioconductor.scm (r-gofuncr): Update to 1.8.0.
 2020-06-13 01:19:54 +02:00
Ricardo Wurmus
a007de81e5
gnu: r-atacseqqc: Update to 1.12.3. 
* gnu/packages/bioconductor.scm (r-atacseqqc): Update to 1.12.3.
 2020-06-13 01:19:54 +02:00
Ricardo Wurmus
785c759617
gnu: r-genomicscores: Update to 2.0.0. 
* gnu/packages/bioconductor.scm (r-genomicscores): Update to 2.0.0.
[propagated-inputs]: Remove r-bsgenome; add r-delayedarray, r-hdf5array, and r-rhdf5.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:54 +02:00
Ricardo Wurmus
e6fbaf0cc7
gnu: r-motifstack: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-motifstack): Update to 1.32.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:54 +02:00
Ricardo Wurmus
e65783e032
gnu: r-motifbreakr: Update to 2.2.0. 
* gnu/packages/bioconductor.scm (r-motifbreakr): Update to 2.2.0.
[propagated-inputs]: Add r-summarizedexperiment.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:54 +02:00
Ricardo Wurmus
da6a75fe00
gnu: r-motifdb: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-motifdb): Update to 1.30.0.
[propagated-inputs]: Add r-genomicranges.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:53 +02:00
Ricardo Wurmus
352cfa3434
gnu: r-motiv: Update to 1.43.0. 
* gnu/packages/bioconductor.scm (r-motiv): Update to 1.43.0.
 2020-06-13 01:19:53 +02:00
Ricardo Wurmus
6d02e17139
gnu: r-rgadem: Update to 2.36.0. 
* gnu/packages/bioconductor.scm (r-rgadem): Update to 2.36.0.
 2020-06-13 01:19:53 +02:00
Ricardo Wurmus
7450edca0d
gnu: r-bacon: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-bacon): Update to 1.16.0.
 2020-06-13 01:19:53 +02:00
Ricardo Wurmus
35bcfaefae
gnu: r-abseqr: Update to 1.6.0. 
* gnu/packages/bioconductor.scm (r-abseqr): Update to 1.6.0.
[native-inputs]: Add r-knitr.
 2020-06-13 01:19:53 +02:00
Ricardo Wurmus
b391b1e47c
gnu: r-a4: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-a4): Update to 1.36.0.
 2020-06-13 01:19:53 +02:00
Ricardo Wurmus
2a91c987fd
gnu: r-a4base: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-a4base): Update to 1.36.0.
 2020-06-13 01:19:53 +02:00
Ricardo Wurmus
e47f9f48d4
gnu: r-a4reporting: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-a4reporting): Update to 1.36.0.
 2020-06-13 01:19:53 +02:00
Ricardo Wurmus
6afea4ea93
gnu: r-a4preproc: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-a4preproc): Update to 1.36.0.
 2020-06-13 01:19:53 +02:00
Ricardo Wurmus
33c9c8563d
gnu: r-a4classif: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-a4classif): Update to 1.36.0.
 2020-06-13 01:19:53 +02:00
Ricardo Wurmus
4f2112add9
gnu: r-a4core: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-a4core): Update to 1.36.0.
 2020-06-13 01:19:53 +02:00
Ricardo Wurmus
d200b4dc48
gnu: r-annaffy: Update to 1.60.0. 
* gnu/packages/bioconductor.scm (r-annaffy): Update to 1.60.0.
 2020-06-13 01:19:53 +02:00
Ricardo Wurmus
500f7df840
gnu: r-mlinterfaces: Update to 1.68.0. 
* gnu/packages/bioconductor.scm (r-mlinterfaces): Update to 1.68.0.
[propagated-inputs]: Add r-rcpp.
 2020-06-13 01:19:53 +02:00