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Author SHA1 Message Date
Ludovic Courtès
3f66b4c266
gnu: lyx: Remove reference to '%outputs'. 
* gnu/packages/tex.scm (lyx)[arguments]: Rewrite as gexps.  Refer
to #$output instead of '%outputs', which 'qt-build-system' no longer
defines.
 2021-11-21 18:37:50 +01:00
John Kehayias
85de88f1ad
gnu: emacs-xwidgets{,-next-pgtk}: Use webkitgtk-with-libsoup2. 
* gnu/packages/emacs.scm (emacs-xwidgets, emacs-next-pgtk)[inputs]:
Replace webkitgtk with webkitgtk-with-libsoup2.
* gnu/packages/webkit.scm (webkitgtk-with-libsoup2): Add further
information about where this package is used and upstream tracker for
libsoup3.
 2021-11-21 16:43:12 +01:00
Maxim Cournoyer
01ea70a29c
gnu: linux-libre: Make build reproducible. 
Fixes <https://issues.guix.gnu.org/24028>.

* gnu/packages/linux.scm (make-linux-libre*): Remove trailing #t.
[phases]{configure}: Set KBUILD_BUILD_USER and KBUILD_BUILD_HOST environment
variables.
 2021-11-21 09:08:52 -05:00
Vivien Kraus
a0e5af4593
gnu: nautilus: Update to 41.0. 
* gnu/packages/gnome.scm (nautilus): Upgrade to 41.0.
* gnu/packages/gnome.scm (nautilus) [arguments]: Use meson 0.59.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2021-11-21 09:08:52 -05:00
Vivien Kraus
fcf60dad58
gnu: gnome-autoar: Update to 0.4.1. 
* gnu/packages/gnome.scm (gnome-autoar): Update to 0.4.1.
* gnu/packages/gnome.scm (gnome-autoar) [build-system]: Switch to meson.
* gnu/packages/gnome.scm (gnome-autoar) [native-inputs]: Add glib:bin for
glib-mkenums.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2021-11-21 09:08:52 -05:00
Timothy Sample
404c7eedfe
gnu: gnome-session: Restore elogind support. 
* gnu/packages/patches/gnome-session-support-elogind.patch: New file.
* gnu/local.mk: Add it.
* gnu/packages/gnome.scm (gnome-session)[source]: Use it.
[arguments]: Add "-Delogind=true" to #:configure-flags; remove
phases that patch in old-style elogind support.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
 2021-11-21 09:08:51 -05:00
Mathieu Othacehe
72501a555e
gnu: genimage: Update to 14-1.11bb044. 
Update to commit 11bb04455 to integrate fixes related to new genext2fs and
e2fsprogs versions.

* gnu/packages/genimage.scm (genimage): Update to 14-1.11bb044.
[arguments]{fix-failing-tests}: Update it.
* gnu/packages/patches/genimage-mke2fs-test.patch: Update it.
 2021-11-21 11:22:45 +00:00
Ricardo Wurmus
e74bcbc64f
gnu: python-scanpy: Set PYTHONPATH variable. 
This is a follow-up to commit 664721422c.

* gnu/packages/bioinformatics.scm (python-scanpy)[arguments]: Set PYTHONPATH
variable during the build as GUIX_PYTHONPATH does not have the intended
effect.
 2021-11-21 09:07:50 +01:00
Ricardo Wurmus
6c9bbf8071
gnu: python-scanpy: Update to 1.8.2. 
* gnu/packages/bioinformatics.scm (python-scanpy): Update to 1.8.2.
[arguments]: Disable test_clustermap test.
 2021-11-21 09:07:50 +01:00
Kaelyn Takata
4c4d53ed52
gnu: xfce-weather-plugin: Fix build by depending on libsoup2. 
* gnu/packages/xfce.scm (xfce-weather-plugin)[inputs]: Replace libsoup with
libsoup-minimal-2.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2021-11-21 09:07:50 +01:00
Jack Hill
9f8a4760e8
gnu: python-libvirt: Update to 7.9.0. 
* gnu/packages/virtualization.scm (python-libvirt): Update to 7.9.0.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2021-11-21 09:07:50 +01:00
Ricardo Wurmus
00127cbca7
gnu: python-seaborn: Update to 0.11.2. 
* gnu/packages/python-xyz.scm (python-seaborn): Update to 0.11.2.
 2021-11-21 09:07:49 +01:00
Maxim Cournoyer
d8b429ddb7
gnu: emacs-elpy: More aggressively trim nondeterministic tests. 
More failing tests keep appearing sparingly, a few at a time.  With the
following change, the build succeeded 20 rounds.

* gnu/packages/emacs-xyz.scm (emacs-elpy)
[phases]{disable-broken-tests}: Disable whole tests families affected by
nondeterministic failures rather than individual tests.
 2021-11-20 22:29:53 -05:00
Ricardo Wurmus
1a9665743b
gnu: perl-cworld-dekker: Use GUIX_PYTHONPATH. 
* gnu/packages/bioinformatics.scm (perl-cworld-dekker)[arguments]: Use
GUIX_PYTHONPATH.
 2021-11-21 00:40:34 +01:00
Ricardo Wurmus
664721422c
gnu: python-scanpy: Use GUIX_PYTHONPATH. 
* gnu/packages/bioinformatics.scm (python-scanpy)[arguments]: Use
GUIX_PYTHONPATH instead of PYTHONPATH.
 2021-11-21 00:39:57 +01:00
Ricardo Wurmus
a22fb2d164
gnu: python-numpy: Alias to python-numpy-1.20. 
Numpy 1.20 is required by numba and umap-learn.  Attempts to rename numpy 1.20
to allow it to coexist with numpy 1.21 in the same environment have not been
successful.

* gnu/packages/python-xyz.scm (python-numpy): Rename to...
(python-numpy-next): ...this variable.
(python2-numpy): Use python-numpy-next package as parent.
(python-numpy-1.20): Inherit from python-numpy-next.
(python-numpy): New variable pointing to python-numpy-1.20.
(python-numba)[propagated-inputs]: Replace python-numpy-1.20 with
python-numpy.
 2021-11-21 00:39:09 +01:00
Ricardo Wurmus
55870e86d9
gnu: multiqc: Remove sanity check. 
* gnu/packages/bioinformatics.scm (multiqc)[arguments]: Delete 'sanity-check phase.
 2021-11-21 00:39:09 +01:00
Ricardo Wurmus
e2ca652c98
gnu: multiqc: Use GUIX_PYTHONPATH. 
* gnu/packages/bioinformatics.scm (multiqc)[arguments]: Replace PYTHONPATH
with GUIX_PYTHONPATH.
 2021-11-21 00:39:05 +01:00
Ludovic Courtès
b2bfedcdb3
gnu: libmp4v2: Build with '-std=c++03'. 
* gnu/packages/video.scm (libmp4v2)[arguments]: Add #:configure-flags.
 2021-11-20 23:11:45 +01:00
Ludovic Courtès
27ceda472a
gnu: python-qtconsole: Add dependency on python-pyqt. 
* gnu/packages/python-xyz.scm (python-qtconsole)[propagated-inputs]: Add
PYTHON-PYQT.
 2021-11-20 23:11:45 +01:00
Ludovic Courtès
aaf210888c
vm: <virtual-machine> defaults to using 'qemu-minimal'. 
'qemu-minimal' is enough for system tests, which is the main (only?) use
of <virtual-machine>.

* gnu/system/vm.scm (<virtual-machine>)[qemu]: Default to QEMU-MINIMAL.
 2021-11-20 23:11:44 +01:00
Ludovic Courtès
ce67634629
gnu: tcp-wrappers: Allow compilation with glibc 2.33. 
* gnu/packages/networking.scm (tcp-wrappers)[source]: Add 'snippet'.
 2021-11-20 23:11:44 +01:00
Ludovic Courtès
83010a08bc
gnu: grafx2: Build with '-fcommon'. 
* gnu/packages/game-development.scm (grafx2)[arguments]: Add '-fcommon'
to #:make-flags.
 2021-11-20 23:11:44 +01:00
Ludovic Courtès
c34bb6b310
gnu: grafx2: Add 'file-name' field to source. 
Without a file name ending in ".tgz" (or similar), the 'unpack' phase
wouldn't extract it (as implemented in commit
cfcead2e51).

* gnu/packages/game-development.scm (grafx2)[source]: Add 'file-name'
field.
 2021-11-20 23:11:44 +01:00
John Kehayias
c51667d52e
gnu: ledger: Remove failing test output. 
* gnu/packages/finance.scm (ledger)[source]: Add snippet to remove a failing
  test.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
 2021-11-20 19:23:50 +01:00
Guillaume Le Vaillant
89eb1f2a76
gnu: sdrangel: Update to 6.17.3. 
* gnu/packages/radio.scm (sdrangel): Update to 6.17.3.
  [arguments]: Add 'fix-boost-compatibility' phase.
 2021-11-20 19:18:44 +01:00
Guillaume Le Vaillant
4d02165992
gnu: opencpn: Update to 5.2.4. 
* gnu/packages/geo.scm (opencpn): Update to 5.2.4.
  [arguments]: Update 'configure-flag' and 'fix-build' phase.
 2021-11-20 18:23:15 +01:00
Ricardo Wurmus
b182e13638
gnu: python-scikit-learn: Update to 1.0.1. 
* gnu/packages/machine-learning.scm (python-scikit-learn): Update to 1.0.1.
[arguments]: Disable one failing network test.
 2021-11-20 16:22:53 +01:00
Ricardo Wurmus
3d56b8af90
gnu: python-scikit-learn: Run tests conditionally. 
* gnu/packages/machine-learning.scm (python-scikit-learn)[arguments]: Respect
TESTS? in 'check phase.
 2021-11-20 16:22:53 +01:00
Ricardo Wurmus
7ca5dc370d
gnu: python-joblib: Update to 1.1.0. 
* gnu/packages/python-xyz.scm (python-joblib): Update to 1.1.0.
[arguments]: Disable one test.
 2021-11-20 16:22:53 +01:00
Ricardo Wurmus
f407e4b0f9
gnu: python2-joblib: Do not inherit source from python-joblib. 
* gnu/packages/python-xyz.scm (python2-joblib)[version]: Explicitly set to
0.14.1.
[source]: Do not inherit.
 2021-11-20 16:22:49 +01:00
Maxim Cournoyer
76df1ad3df
gnu: gtk: Guard against timeouts in the test suite. 
This change piggy backs on the improvements to the meson-build-system made in
dfcc96d8f48716ae5aefb383c58b153d5bcb407c; it's motivated by timeouts that
occurred in the GTK test suite while building on a heavily loaded machine.

* gnu/packages/gtk.scm (gtk)[parallel-tests]: New argument.
[test-options]: New argument, which now includes --suite=gtk and
--no-suite=gsk-compare-broadway, to match what upstream uses.
[phases]{check}: Remove override.
 2021-11-20 08:57:02 -05:00
Maxim Cournoyer
58c42ce41d
gnu: libnice: Disable the 'test-bsd' test. 
* gnu/packages/networking.scm (libnice)
[phases]{disable-failing-test}: Rename to...
{disable-failing-tests}: ... this, plural.  Disable 'test-bsd'.
 2021-11-20 08:57:02 -05:00
Maxim Cournoyer
cb09adc093
gnu: wayland: Use native-inputs unconditionally 
* gnu/packages/freedesktop.scm (wayland): Remove trailing #t.
[phases]: Use native-inputs unconditionally.
 2021-11-20 08:57:02 -05:00
Maxim Cournoyer
afacad8b67
gnu: gnome-shell: Update to 41.0. 
* gnu/packages/gnome.scm (gnome-shell): Update to 41.0.
[origin]: Remove patches and modules fields.
[phases]{pre-check}: Set HOME.
* gnu/packages/patches/gnome-shell-disable-test.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): De-register it.
 2021-11-20 08:57:01 -05:00
Maxim Cournoyer
b342b68c83
gnu: gsettings-desktop-schemas: Update to 41.0. 
* gnu/packages/gnome.scm (gsettings-desktop-schemas): Update to 41.0.
Reformat synopsis and description.
[origin]: Fix indentation.
 2021-11-20 08:57:01 -05:00
Maxim Cournoyer
9e87a92742
gnu: gjs: Update to 1.70.0. 
* gnu/packages/gnome.scm (gjs): Update to 1.70.0.
 2021-11-20 08:57:01 -05:00
Maxim Cournoyer
d1c2fe248a
gnu: mutter: Update to 41.0 and enable tests. 
* gnu/packages/gnome.scm (mutter): Update to 41.0.
[imported-modules, modules]: New arguments.
[configure-flags]: Specify the gles2_libname, egl_device and wayland_eglstream
options.  Enable the profiler by removing the option.
[phases]{patch-dlopen-calls}: New phase.
{disable-problematic-tests}: Likewise.
{check}: Override phase.
[native-inputs]{xorg-server-for-tests}: Replace with...
{xvfb-run}: ... this.
{adwaita-icon-theme, libxcursor, pipewire-0.3}
{python-dbus, python-dbusmock, tini}: New native inputs.
[propagated-inputs]: Add libxcvt.
[inputs]: Add egl-wayland and sysprof.
 2021-11-20 08:57:01 -05:00
Maxim Cournoyer
7063ee6d9d
gnu: libxcursor: Add a search path for XCURSOR_PATH. 
* gnu/packages/xorg.scm (libxcursor): Fix indentation.
[native-search-paths]: New field (previously commented).  Update comment.
 2021-11-20 08:57:01 -05:00
Maxim Cournoyer
8444b44a8c
build: syscalls: Add a SET-CHILD-SUBREAPER! procedure. 
* guix/build/syscalls.scm (PR_SET_CHILD_SUBREAPER): New variable.
(set-child-subreaper!): New procedure.
 2021-11-20 08:57:00 -05:00
Ricardo Wurmus
83580b949d
gnu: python-numba: Update to 0.54.1. 
* gnu/packages/python-xyz.scm (python-numba): Update to 0.54.1.
[propagated-inputs]: Replace python-numpy with python-numpy-1.20.
[arguments]: Add phase 'disable-failing-tests.
 2021-11-20 12:02:20 +01:00
Ricardo Wurmus
bcf7d0bc7b
gnu: python-numba: Run tests conditionally. 
* gnu/packages/python-xyz.scm (python-numba)[arguments]: Respect TESTS? argument.
 2021-11-20 12:02:20 +01:00
Ricardo Wurmus
40d4b541d9
gnu: python-numba: Remove trailing #T. 
* gnu/packages/python-xyz.scm (python-numba)[arguments]: Remove trailing #T
from build phase.
 2021-11-20 12:02:20 +01:00
Ricardo Wurmus
d8b7986769
gnu: Add python-numpy-1.20. 
* gnu/packages/python-xyz.scm (python-numpy-1.20): New variable.
 2021-11-20 12:02:20 +01:00
Ricardo Wurmus
cf649c1e0d
gnu: repo2docker: Use GUIX_PYTHONPATH. 
* gnu/packages/jupyter.scm (repo2docker)[arguments]: Use GUIX_PYTHONPATH
instead of PYTHONPATH.
 2021-11-20 12:02:19 +01:00
Ricardo Wurmus
3b2553ee4c
gnu: python-llvmlite: Update to 0.37.0. 
* gnu/packages/llvm.scm (python-llvmlite): Update to 0.37.0.
[inputs]: Update patched LLVM.
 2021-11-20 12:02:19 +01:00
Ricardo Wurmus
2c19edeb4f
gnu: python-llvmlite: Remove trailing #T. 
* gnu/packages/llvm.scm (python-llvmlite)[arguments]: Remove trailing #T from
build phases.
 2021-11-20 12:02:19 +01:00
Ricardo Wurmus
443f3e170a
gnu: python-pytorch: Warn of missing test inputs. 
* gnu/packages/machine-learning.scm (python-pytorch): Add comment.
 2021-11-20 12:02:19 +01:00
Ricardo Wurmus
9a3dffc851
gnu: python-pytorch: Add missing input. 
* gnu/packages/machine-learning.scm (python-pytorch)[propagated-inputs]: Add
python-click.
 2021-11-20 12:02:19 +01:00
Ricardo Wurmus
1e13f73605
gnu: python-pytorch: Use ADD-INSTALLED-PYTHONPATH. 
* gnu/packages/machine-learning.scm (python-pytorch)[arguments]: Do not set
PYTHONPATH; use add-installed-pythonpath instead.
 2021-11-20 12:02:19 +01:00