This is a followup to 8155a20907.
* guix/scripts/pull.scm (migrate-generations): Compute the right target
for /var/guix/profiles/per-user/USER/current-guix. Previously we'd
return "current-N-link" instead of "current-guix-N-link'.
Reported by Formbi on #guix.
* guix/scripts/pull.scm (migrate-generations): Use 'symlink' and
'delete-file' instead of 'rename-file'. The latter could lead to EXDEV
when $HOME and /var were different partitions.
Reported by Mark H Weaver <mhw@netris.org>.
Fixes <https://bugs.gnu.org/33023>.
* configure.ac: Remove use of 'GUIX_ASSERT_LIBGCRYPT_USABLE'.
Add "^GUIX_" to the forbidden M4 patterns.
Previously the migration code would fail to create that file, so
~/.config/guix/current would be dangling.
* guix/scripts/pull.scm (migrate-generations): Create
/var/guix/profiles/per-user/USER/current-guix.
* gnu/packages/bootloaders.scm (u-boot): Update to 2018.09.
(u-boot-tools)[arguments]: Substitute "coverage" for "python-coverage". Update
workaround for only 99% test coverage.
Signed-off-by: Leo Famulari <leo@famulari.name>
Fixes <https://bugs.gnu.org/32183>.
Reported by Pjotr Prins <pjotr.public12@thebird.nl>
and Konrad Hinsen <konrad.hinsen@fastmail.net>.
* gnu/packages/package-management.scm (guix-daemon)[arguments]: Execute
/var/guix/profiles/per-user/root/current-guix/bin/guix instead of ~root/….
This is more consistent with what 'guix package' does, more pleasant for
users (we no longer clobber ~/.config/guix), and more
cluster-friendly (since /var/guix/profiles is usually an NFS share
already.)
* guix/scripts/pull.scm (%current-profile, %user-profile-directory): New
variables.
(migrate-generations, ensure-default-profile): New procedures.
(guix-pull): Use %CURRENT-PROFILE by default. Call
'ensure-default-profile'.
* doc/guix.texi (Invoking guix pull): Adjust 'guix package -p
~/.config/guix/current' example.
* guix/scripts.scm (warn-about-old-distro): Check %PROFILE-DIRECTORY
"/current-guix".
* gnu/packages/bioinformatics.scm (kallisto): Update to 0.44.0.
[source]: Fetch from git.
[arguments]: Add build phase to use htslib from Guix.
[inputs]: Add htslib.
There's no functional difference between 'make test_pytest' and running
'py.test' directly, but there may be in future.
This follows up on commit 14173b3c6765bd8fcb2b12ea28fc27226645c7e1.
* gnu/packages/disk.scm (ranger)[arguments]: Use #:test-target to run
the (same) tests through 'make'.
[native-inputs]: Remove left-over python-flake8 and python-pylint.
* gnu/packages/disk.scm (ranger): Update to 1.9.2.
[native-inputs]: Order alphabetically.
[arguments]: Actually run tests and remove useless #:test-target.
Fixes <https://bugs.gnu.org/32929>.
Reported by Michael Bowcutt <mwb71@case.edu>.
* guix/self.scm (guix-derivation)[guile]: Use "2.2" when PULL-VERSION >= 1.
Likewise for the #:guile-version argument.
