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34867 commits

Author SHA1 Message Date
Christopher Baines
41c685f51c
gnu: Add perl-http-tinyish. 
* gnu/packages/web.scm (perl-http-tinyish): New variable.
 2019-04-14 10:45:57 +01:00
Rutger Helling
1b7436aeb5
gnu: wine-staging: Update to 4.6. 
* gnu/packages/wine.scm (wine-staging-patchset-data): Update to 4.6.
* gnu/packages/wine.scm (wine-staging): Update to 4.6.
 2019-04-14 09:34:43 +02:00
Nicolò Balzarotti
296ea15cf3
gnu: Add r-rex. 
* gnu/packages/cran.scm (r-rex): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2019-04-13 11:12:15 +02:00
Ricardo Wurmus
472af99950
gnu: Add marble-marcher. 
* gnu/packages/games.scm (marble-marcher): New variable.
 2019-04-13 11:06:33 +02:00
Mark H Weaver
5069baedb8
gnu: emacs: Update to 26.2. 
* gnu/packages/emacs.scm (emacs): Update to 26.2.
 2019-04-12 18:42:43 -04:00
Julien Lepiller
ee6c4b62b8
gnu: opam: Update to 2.0.4. 
* gnu/packages/ocaml.scm (opam): Update to 2.0.4.
 2019-04-12 22:08:28 +02:00
Christopher Baines
81343b9a34
gnu: Fix uri for perl-template-toolkit. 
* gnu/packages/perl.scm (perl-template-toolkit)[source]: Fix origin uri.
 2019-04-12 20:56:21 +01:00
Ricardo Wurmus
e768c37e3f
gnu: r-rpart: Update to 4.1-15. 
* gnu/packages/statistics.scm (r-rpart): Update to 4.1-15.
 2019-04-12 19:27:39 +02:00
Ricardo Wurmus
7f290982dc
gnu: r-reticulate: Update to 1.12. 
* gnu/packages/cran.scm (r-reticulate): Update to 1.12.
 2019-04-12 18:34:02 +02:00
Danny Milosavljevic
16cb1c51ad
gnu: fc-host-tools: Fix fc-loadtool. 
* gnu/packages/embedded.scm (fc-host-tools)[arguments]<#:phases>
[patch-installation-paths]: Modify.
 2019-04-12 16:30:10 +02:00
Jelle Licht
21d56a8237
gnu: emacs-direnv: Update to 1.5.0. 
* gnu/packages/emacs-xyz.scm (emacs-direnv): Update to 1.5.0.
 2019-04-12 14:00:58 +02:00
Eric Bavier
89647ff1d4
gnu: idris: Run tests. 
* gnu/packages/patches/idris-test-no-node.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/idris.scm (idris)[origin]: Use it.
[native-inputs]: New field.
[arguments]: Remove "#:tests? #f".  Add custom 'check' phase after 'install'.
 2019-04-11 19:34:01 -05:00
Eric Bavier
e16bc71015
gnu: idris: Enable FFI and GMP support. 
* gnu/packages/idris.scm (idris)[inputs]: Add ghc-libffi.
[arguments]: Add "-fFFI" and "-fGMP" to #:configure-flags.
 2019-04-11 19:34:01 -05:00
Eric Bavier
fb038f32ae
gnu: Add ghc-libffi. 
* gnu/packages/haskell.scm (ghc-libffi): New variable.
 2019-04-11 19:34:00 -05:00
Eric Bavier
a4df9ba4ec
gnu: idris: Upgrade to 1.3.1. 
* gnu/packages/idris.scm (idris): Upgrade to 1.3.1.
[arguments]: Remove 'update-constraints' phase.
 2019-04-11 19:34:00 -05:00
Danny Milosavljevic
55548cdc6a
gnu: rust: Enable parallel tests starting with 1.26. 
* gnu/packages/rust.scm (rust-1.26)[arguments]<#:phases>[check]: Enable
parallel tests.
 2019-04-12 00:26:29 +02:00
Ricardo Wurmus
b2521eed91
gnu: r-ggthemes: Update to 4.1.1. 
* gnu/packages/statistics.scm (r-ggthemes): Update to 4.1.1.
 2019-04-11 23:37:25 +02:00
Ricardo Wurmus
5bd8ad8bde
gnu: r-plotly: Update to 4.9.0. 
* gnu/packages/statistics.scm (r-plotly): Update to 4.9.0.
 2019-04-11 23:37:24 +02:00
Ricardo Wurmus
c0fcbdfa9d
gnu: r-plotrix: Update to 3.7-5. 
* gnu/packages/statistics.scm (r-plotrix): Update to 3.7-5.
 2019-04-11 23:37:24 +02:00
Ricardo Wurmus
eacfa685d7
gnu: r-devtools: Update to 2.0.2. 
* gnu/packages/statistics.scm (r-devtools): Update to 2.0.2.
 2019-04-11 23:37:24 +02:00
Ricardo Wurmus
6e95f0e153
gnu: r-backports: Update to 1.1.4. 
* gnu/packages/statistics.scm (r-backports): Update to 1.1.4.
 2019-04-11 23:37:24 +02:00
Ricardo Wurmus
9fc1cdc928
gnu: r-rversions: Update to 1.1.0. 
* gnu/packages/statistics.scm (r-rversions): Update to 1.1.0.
 2019-04-11 23:37:24 +02:00
Ricardo Wurmus
67c6770d39
gnu: r-data-table: Update to 1.12.2. 
* gnu/packages/statistics.scm (r-data-table): Update to 1.12.2.
 2019-04-11 23:37:24 +02:00
Ricardo Wurmus
e9437c5b4a
gnu: r-rlang: Update to 0.3.4. 
* gnu/packages/statistics.scm (r-rlang): Update to 0.3.4.
 2019-04-11 23:37:24 +02:00
Ricardo Wurmus
00d14a4156
gnu: r-ggplot2: Update to 3.1.1. 
* gnu/packages/statistics.scm (r-ggplot2): Update to 3.1.1.
 2019-04-11 23:37:24 +02:00
Ricardo Wurmus
79d8fdcce3
gnu: r-nlme: Update to 3.1-139. 
* gnu/packages/statistics.scm (r-nlme): Update to 3.1-139.
 2019-04-11 23:37:24 +02:00
Ricardo Wurmus
9f2a87d1bf
gnu: r-pracma: Update to 2.2.5. 
* gnu/packages/maths.scm (r-pracma): Update to 2.2.5.
 2019-04-11 23:37:24 +02:00
Ricardo Wurmus
be5385eb83
gnu: r-wgcna: Update to 1.67. 
* gnu/packages/cran.scm (r-wgcna): Update to 1.67.
 2019-04-11 23:37:24 +02:00
Ricardo Wurmus
d1ed092e83
gnu: r-reinforcelearn: Update to 0.2.1. 
* gnu/packages/cran.scm (r-reinforcelearn): Update to 0.2.1.
 2019-04-11 23:37:24 +02:00
Ricardo Wurmus
000b3ef96f
gnu: r-huge: Update to 1.3.2. 
* gnu/packages/cran.scm (r-huge): Update to 1.3.2.
 2019-04-11 23:37:24 +02:00
Ricardo Wurmus
4c920fbbd5
gnu: r-summarytools: Update to 0.9.3. 
* gnu/packages/cran.scm (r-summarytools): Update to 0.9.3.
[propagated-inputs]: Add r-tibble.
 2019-04-11 23:37:24 +02:00
Ricardo Wurmus
a108ef6209
gnu: r-remotes: Update to 2.0.4. 
* gnu/packages/cran.scm (r-remotes): Update to 2.0.4.
 2019-04-11 23:37:24 +02:00
Ricardo Wurmus
3517101521
gnu: r-usethis: Update to 1.5.0. 
* gnu/packages/cran.scm (r-usethis): Update to 1.5.0.
[propagated-inputs]: Add r-purrr, r-withr, and r-yaml.
 2019-04-11 23:37:24 +02:00
Ricardo Wurmus
a26bd4718b
gnu: r-tinytex: Update to 0.12. 
* gnu/packages/cran.scm (r-tinytex): Update to 0.12.
 2019-04-11 23:37:23 +02:00
Ricardo Wurmus
1235f0d3a2
gnu: r-broom: Update to 0.5.2. 
* gnu/packages/cran.scm (r-broom): Update to 0.5.2.
 2019-04-11 23:37:23 +02:00
Ricardo Wurmus
a315d49633
gnu: r-ddalpha: Update to 1.3.9. 
* gnu/packages/cran.scm (r-ddalpha): Update to 1.3.9.
 2019-04-11 23:37:23 +02:00
Ricardo Wurmus
1e0b0a2ec2
gnu: r-rvest: Update to 0.3.3. 
* gnu/packages/cran.scm (r-rvest): Update to 0.3.3.
 2019-04-11 23:37:23 +02:00
Ricardo Wurmus
c4a50a8a47
gnu: r-genomicfeatures: Update to 1.34.8. 
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.34.8.
 2019-04-11 23:37:19 +02:00
Eric Bavier
a6de569ea2
gnu: creduce: Upgrade to 2.8.0. 
* gnu/packages/debug.scm (creduce): Upgrade to 2.8.0.
[inputs]: Use llvm-6 and clang-6.  Remove perl-sys-cpu.
[arguments]: Use custom 'check phase.
 2019-04-11 12:17:01 -05:00
Ricardo Wurmus
c2f6f4e500
gnu: Add python2-checkm-genome. 
* gnu/packages/bioinformatics.scm (python2-checkm-genome): New variable.
 2019-04-11 17:54:57 +02:00
Ricardo Wurmus
4fa16c9ae6
gnu: Add tensorflow. 
* gnu/packages/machine-learning.scm (tensorflow): New variable.
 2019-04-11 17:54:57 +02:00
Danny Milosavljevic
d0a39b928c
gnu: make-linux-libre: Install "Module.symvers". 
* gnu/packages/linux.scm (make-linux-libre): Install "Module.symvers".
 2019-04-11 17:54:11 +02:00
Pierre Neidhardt
6a8c4b9e11
gnu: Add vhba-module. 
* gnu/packages/linux.scm (vhba-module): New variable.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2019-04-11 17:52:52 +02:00
Ricardo Wurmus
12327d7447
gnu: guitarix: Update to 0.38.1. 
* gnu/packages/audio.scm (guitarix): Update to 0.38.1.
 2019-04-11 17:18:08 +02:00
Ricardo Wurmus
36f4f1e297
gnu: Add pplacer. 
* gnu/packages/bioinformatics.scm (pplacer, pplacer-scripts): New variables.
 2019-04-11 17:18:08 +02:00
Ricardo Wurmus
fb168a310e
gnu: ocaml-mcl: Do not use unstable tarball. 
* gnu/packages/machine-learning.scm (ocaml-mcl)[source]: Use git-fetch.
 2019-04-11 17:18:08 +02:00
Ricardo Wurmus
b24aaeec45
gnu: ocaml-mcl: Build with latest OCaml. 
* gnu/packages/machine-learning.scm (ocaml-mcl)[arguments]: Remove #:ocaml
and #:findlib arguments; patch code in build phase.
[native-inputs]: Add ocamlbuild.
 2019-04-11 17:17:22 +02:00
Ricardo Wurmus
ddb5dc08a7
gnu: Add ocaml-gsl-1. 
* gnu/packages/ocaml.scm (ocaml-gsl-1): New variable.
 2019-04-11 17:11:41 +02:00
Tobias Geerinckx-Rice
e70771f08e
gnu: httrack: Correct licence prefix. 
This follows up on commit ed132a57c1.

* gnu/packages/web.scm (httrack)[license]: Use the right prefix.
 2019-04-11 14:25:05 +02:00
Nicolas Goaziou
ed132a57c1
gnu: Add httrack. 
* gnu/packages/web.scm (httrack): New variable.
 2019-04-11 14:04:54 +02:00