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1759 commits

Author SHA1 Message Date
Andreas Enge
1d6589db81
gnu: Add python-flint. 
* gnu/packages/algebra.scm (python-flint): New variable.
* gnu/packages/patches/python-flint-includes.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register the patch.
 2019-03-19 10:45:17 +01:00
Tobias Geerinckx-Rice
9081333bcd
gnu: cracklib: Update to 2.9.7. 
* gnu/packages/password-utils.scm (cracklib): Update to 2.9.7.
[source]: Remove patches.
* gnu/packages/patches/cracklib-CVE-2016-6318.patch,
gnu/packages/patches/cracklib-fix-buffer-overflow.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove them.
 2019-03-18 23:42:48 +01:00
ng0
a3f2c295e7
gnu: libextractor: Update to 1.9. 
* gnu/packages/gnunet (libextractor): Update to 1.9.
[source]: Remove patches.
* gnu/packages/patches/libextractor-CVE-2018-20430.patch
gnu/packages/patches/libextractor-CVE-2018-20431.patch:
Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.

Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
 2019-03-18 15:05:08 +01:00
Marius Bakke
7fda7b8fad
gnu: pugixml: Build as shared library. 
* gnu/packages/patches/pugixml-versioned-libdir.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/xml.scm (pugixml)[source](patches): New field.
[arguments]: Instruct the build system to create a shared rather than static
library.
[native-inputs]: Add PKG-CONFIG.
 2019-03-10 21:44:25 +01:00
Pierre Neidhardt
983550692d
gnu: Add hyperledger-fabric. 
* gnu/local.mk (hyperledger): New variable.
 2019-03-09 10:15:46 +01:00
Ricardo Wurmus
8b6acb1f20
gnu: blast+: Update to 2.7.1. 
* gnu/packages/bioinformatics.scm (blast+): Update to 2.7.1.
[inputs]: Add lmdb.
[source]: Remove obsolete patch.
* gnu/package/patches/blast+-fix-makefile.patch: Remove patch.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2019-03-08 23:00:07 +01:00
Ludovic Courtès
ec600e4544
Add (gnu build accounts). 
* gnu/build/accounts.scm, tests/accounts.scm: New files.
* Makefile.am (SCM_TESTS): Add tests/accounts.scm.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add build/accounts.scm.
 2019-03-07 20:05:09 +01:00
Ludovic Courtès
f6f67b87c0
system: Add (gnu system accounts). 
The (gnu system accounts) module is meant to be used both on the build-
and on the host-side.

* gnu/system/shadow.scm <top level>: Call 'default-shell'.
(<user-account>, <user-group>): Move to...
* gnu/system/accounts.scm: ... here.  New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add system/accounts.scm.
 2019-03-07 20:04:02 +01:00
Ivan Petkov
1a3db0b22f
gnu: rust: Update to 1.31.1. 
* gnu/patches/rust-1.30-gdb-llvm.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/rust.scm (rust): Rename to...
(rust-1.29): ...this.
(rust-1.30): New variable.
(rust): New variable.

Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
 2019-03-05 13:43:09 +01:00
Tobias Geerinckx-Rice
ad257ec8b5
gnu: thermald: Update to 1.8. 
* gnu/packages/admin.scm (thermald): Update to 1.8.
[source]: Add patch.
* gnu/packages/patches/thermald-make-int-max32-visible.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2019-03-04 19:07:10 +01:00
Ricardo Wurmus
96f39b2a6e
gnu: Add java-jblas. 
* gnu/packages/java-maths.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
 2019-03-04 17:14:15 +01:00
Ricardo Wurmus
74fea1e2df
gnu: lyx: Remove obsolete patch. 
* gnu/packages/patches/lyx-2.2.3-fix-test.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2019-03-04 17:14:15 +01:00
Lprndn
e32099732c
gnu: Add arcan. 
* gnu/packages/arcan.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-03-04 15:22:59 +01:00
Efraim Flashner
4f889375f2
gnu: libopenshot: Fix tests on other architectures. 
* gnu/packages/video.scm (libopenshot)[source]: Add patch.
* gnu/packages/patches/libopenshot-fixup-tests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
 2019-03-03 17:35:49 +02:00
Tobias Geerinckx-Rice
a92c6b1a2b
gnu: openssl: Fix CVE-2019-1559. 
* gnu/packages/tls.scm (openssl)[replacement]: New field.
(openssl/fixed): New variable.
(openssl-next)[inherit]: Inherit from it instead.
* gnu/packages/patches/openssl-CVE-2019-1559.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2019-03-01 00:00:16 +01:00
Tobias Geerinckx-Rice
2a18b57222
gnu: netpbm: Fix CVE-2017-258[67]. 
* gnu/packages/netpbm.scm (netpbm)[source]: Add patches.
* gnu/packages/patches/netpbm-CVE-2017-2586.patch,
gnu/packages/patches/netpbm-CVE-2017-2587.patch: New files.
* gnu/local.mk: Fix missing copyright year.
(dist_patch_DATA): Add them.
 2019-02-28 22:35:41 +01:00
Marius Bakke
0ad4a12088
gnu: wpa_supplicant: Update to 2.7. 
* gnu/packages/patches/wpa-supplicant-CVE-2017-13082.patch,
gnu/packages/patches/wpa-supplicant-CVE-2018-14526.patch,
gnu/packages/patches/wpa-supplicant-fix-key-reuse.patch,
gnu/packages/patches/wpa-supplicant-fix-nonce-reuse.patch,
gnu/packages/patches/wpa-supplicant-fix-zeroed-keys.patch,
gnu/packages/patches/wpa-supplicant-krack-followups.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/admin.scm (wpa-supplicant-minimal): Update to 2.7.
[source](patches): Remove.
 2019-02-28 19:08:48 +01:00
Efraim Flashner
c643b49244
gnu: Add toot. 
* gnu/packages/mastodon.scm (toot): New variable.
* gnu/local.mk (GNU_SYSTSEM_MODULES): Register it.
 2019-02-28 08:56:59 +02:00
Tobias Geerinckx-Rice
17c65da896
gnu: wesnoth: Update to 1.14.6. 
* gnu/packages/games.scm (wesnoth): Update to 1.14.6.
[source]: Remove upstreamed patch.
* packages/patches/wesnoth-newer-boost.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2019-02-27 15:48:52 +01:00
Nicolas Goaziou
8d611ef085
gnu: musescore: Update to 3.0.3. 
* gnu/packages/music.scm (musescore): Update to 3.0.3.
[source]: Remove now obsolete patch.
[arguments]: Do not use bundled (as a submodule) libcrashreporter-qt.
* gnu/packages/patches/musescore-fix-use_webengine.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Apply file removal.
 2019-02-27 01:10:48 +01:00
Efraim Flashner
1a753385c7
gnu: Add libtommath. 
* gnu/packages/multiprecision.scm (libtommath): New variable.
* gnu/packages/patches/libtommath.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
 2019-02-24 10:39:51 +02:00
Marius Bakke
2bf5097784
gnu: xmodmap: Update to 1.0.10. 
* gnu/packages/patches/xmodmap-asprintf.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/xorg.scm (xmodmap): Update to 1.0.10.
[source](patches): Remove.
[home-page]: Set to source repository.
 2019-02-20 16:40:32 +01:00
Leo Famulari
c12b234695
gnu: libgd: Fix CVE-2019-{6977,6978}. 
* gnu/packages/gd.scm (gd)[replacement]: New field.
(gd/fixed): New variable.
* gnu/packages/patches/gd-CVE-2019-6977.patch,
gnu/packages/patches/gd-CVE-2019-6978.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
 2019-02-19 15:47:35 -05:00
Leo Famulari
c9b36f450b
gnu: Add magic-wormhole-mailbox-server. 
* gnu/packages/magic-wormhole.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
 2019-02-19 14:34:31 -05:00
Marius Bakke
f1e9de4d3a
gnu: Add ungoogled-chromium. 
* gnu/packages/aux-files/chromium/master-preferences.json,
gnu/packages/chromium.scm: New files.
* gnu/local.mk (GNU_SYSTEM_MODULES): Adjust accordingly.
 2019-02-18 23:41:56 +01:00
Tobias Geerinckx-Rice
d0d207cdca
gnu: tomsfastmath: Update to 0.13.1. 
* gnu/packages/multiprecision.scm (tomsfastmath): Update to 0.13.1.
[source]: Remove patch.
* gnu/packages/patches/tomsfastmath-constness.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2019-02-18 18:07:06 +01:00
Marius Bakke
9fd6f2a713
gnu: xf86-video-i128: Update to 1.4.0. 
* gnu/packages/patches/xf86-video-i128-remove-mibstore.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/xorg.scm (xf86-video-i128): Update to 1.4.0.
[source](patches): Remove.
 2019-02-17 18:44:20 +01:00
Tobias Geerinckx-Rice
4f4b37dfdf
gnu: pius: Update to 2.2.7. 
* gnu/packages/gnupg.scm (pius): Update to 2.2.7.
[source]: Remove upstreamed patch.
* gnu/packages/patches/pius.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2019-02-17 03:37:48 +01:00
Danny Milosavljevic
f7c4853a6b
gnu: Add genimage. 
* gnu/packages/genimage.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
 2019-02-15 17:49:08 +01:00
Marius Bakke
d199a4c7b4
gnu: LLVM, Clang: Update to 7.0.1. 
* gnu/packages/patches/clang-7.0-libc-search-path.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/llvm.scm (llvm, clang-runtime, clang): Update to 7.0.1.
(llvm-7.0.1): Remove variable.
(clang-from-llvm)[arguments]: Adjust phase to match Clang 7.
(llvm-6, clang-runtime-6, clang-6): New public variables.
* gnu/packages/dlang.scm (ldc)[native-inputs]: Change LLVM and CLANG to
LLVM-6.0 and CLANG-6.0.
* gnu/packages/gl.scm (mesa)[inputs]: Change from LLVM to LLVM-6.
 2019-02-15 12:12:09 +01:00
Tobias Geerinckx-Rice
b2cf559772
gnu: allegro@4: Update to 4.4.3. 
* gnu/packages/game-development.scm (allegro-4): Update to 4.4.3.
[source]: Remove upstreamed patch.
* gnu/packages/patches/allegro4-mesa-18.2.5-and-later.patch:
Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2019-02-15 05:41:20 +01:00
Christopher Baines
28cf8dab3e
gnu: ruby-safe-yaml: Add missing require 'time'. 
Patch ruby-safe-yaml to fix an issue that would lead to an error like this:
uninitialized constant SafeYAML::Parse::Date::DateTime

It's been reported upstream [1], and this patch was taken from the upstream Git
repository.

1: https://github.com/dtao/safe_yaml/issues/80

* gnu/packages/ruby.scm (ruby-safe-yaml)[source]: Switch to the Git repository
so that applying patches works and add a patch.
[arguments]: Enable tests and add a phase to set the TZ environment variable,
as one of the tests depends on a certian timezone.
* gnu/packages/patches/ruby-safe-yaml-add-require-time.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add new patch file.
 2019-02-14 21:37:52 +00:00
Eric Bavier
40b114c0bb
gnu: dealii: Upgrade to 9.0.1. 
* gnu/packages/patches/dealii-mpi-deprecations.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/maths.scm (dealii)[source]: Upgrade to 9.0.1.  Use patch.
[arguments]: Use new MPI configuration flags.
 2019-02-13 22:39:12 -06:00
Andreas Enge
69c15ad8a4
gnu: qtbase: Restore compilation on linux kernels < 4.11. 
Fixes <https://bugs.gnu.org/34431>.

* gnu/packages/patches/qtbase-old-kernel.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register patch.
* gnu/packages/qt.scm (qtbase): Add patch.
 2019-02-14 00:30:27 +01:00
Eric Bavier
f73750e6f4
gnu: scalapack: Remove use of deprecated MPI1 symbols. 
* gnu/packages/patches/scalapack-blacs-mpi-deprecations.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/maths.scm (scalapack)[source]: Use it.
 2019-02-13 14:08:19 -06:00
Ricardo Wurmus
f90ed0284a
gnu: ledger: Update to 3.1.2 [security fixes]. 
* gnu/packages/finance.scm (ledger): Update to 3.1.2.
[arguments]: Remove #:modules; remove obsolete configure flags; remove make
flags; remove phase "boost-compat"; remove custom check phase; remove
"relocate-elisp" phase; disable broken test in "check-setup" phase.
[native-inputs]: Remove emacs-minimal.
[license]: Remove gpl2+.
* gnu/packages/patches/ledger-revert-boost-python-fix.patch: Remove patch.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2019-02-13 10:55:49 +01:00
Christopher Baines
e7e259a503
gnu: red-eclipse: Fix build. 
Add a patch from the upstream repository [1] that resolves some errors that
prevent the package from building [2].

1: https://github.com/red-eclipse/base/commit/b16b4963c1ad81bb9ef784bc49
2: error: ‘____gammal_r_finite’ was not declared in this scope

* gnu/packages/games.scm (red-eclipse)[source] Add patch.
* gnu/packages/patches/red-eclipse-remove-gamma-name-hack.patch: New file
* gnu/local.mk (dist_patch_DATA): Add new patch.
 2019-02-13 08:03:00 +00:00
Marius Bakke
bec2a2e10e
gnu: Move KDE Plasma components to separate module. 
* gnu/packages/kde.scm (libkscreen, libksysguard): Move from here ...
* gnu/packages/kde-plasma.scm: ... to here.  New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Adjust accordingly.
 2019-02-12 23:49:02 +01:00
Leo Famulari
ce4593ec4c
gnu: runc: Update to 1.0.0-rc6 [fixes CVE-2019-5736]. 
* gnu/packages/virtualization.scm (runc): Update to 1.0.0-rc6.
[source]: Use a descriptive file-name. Add 'runc-CVE-2019-5736.patch'
* gnu/packages/patches/runc-CVE-2019-5736.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
 2019-02-12 12:53:12 -05:00
Efraim Flashner
c86b5f1b9b
gnu: glibc@2.27: fix CVE-2018-11236, CVE-2018-11237. 
* gnu/packages/base.scm (glibc@2.27)[sources]: Add patches.
[properties]: New field, mark CVE-2017-18269 fixed.
* gnu/packages/patches/glibc-CVE-2018-11236.patch,
gnu/packages/patches/glibc-CVE-2018-11237.patch: New files.
* gnu/local.mk (dist_patch_DATA): Register them.
 2019-02-12 09:08:13 +02:00
Ludovic Courtès
a76d0f032b
gnu: gnome-shell: Customize the GDM log-in screen. 
* gnu/packages/patches/gnome-shell-theme.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gnome.scm (gnome-shell)[source](patches, modules)
(snippet): New fields.
[arguments]: Add 'rebuild-css' phase.
[native-inputs]: Add RUBY-SASS.
 2019-02-10 23:25:01 +01:00
Nicolas Goaziou
2becddeb0c
gnu: emacs-pdf-tools: Update to 0.90. 
* gnu/packages/emacs-xyz.scm (emacs-pdf-tools): Update to 0.90.
[source]: Remove patch.
* gnu/packages/patches/emacs-pdf-tools-poppler.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove reference to deleted file.
 2019-02-09 23:30:13 +01:00
Marius Bakke
037d591367
gnu: libvpx: Update to 1.8.0. 
* gnu/packages/patches/gst-plugins-good-libvpx-compat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/video.scm (libvpx): Update to 1.8.0.
[source](patches): Remove obsolete patch.
(libvpx-1.7): New public variable.
* gnu/packages/gnuzilla.scm (icecat)[inputs]: Use LIBVPX-1.7 instead of LIBVPX.
* gnu/packages/gstreamer.scm (gst-plugins-good)[source](patches): New field.
[arguments]: Add #:make-flags.
 2019-02-09 20:58:15 +01:00
Ludovic Courtès
50a93adc05
Merge branch 'staging' 2019-02-09 15:14:59 +01:00
Eric Bavier
68a116bd56
gnu: cool-retro-term: Upgrade to 1.1.1. 
* gnu/packages/terminals.scm (cool-retro-term)[source]: Upgrade to 1.1.1.
Remove patches.  Adjust filtering in snippet for added/removed fonts.
[arguments]: Return #t in 'add-alternate-name' phase.
* gnu/packages/patches/cool-retro-term-dont-check-uninit-member.patch,
  gnu/packages/patches/cool-retro-term-fix-array-size.patch,
  gnu/packages/patches/cool-retro-term-memory-leak-1.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
 2019-02-09 00:50:16 -06:00
Eric Bavier
7fedc3fdfb
gnu: hdf5: Remove use of deprecated MPI1 symbols. 
* gnu/packages/patches/hdf5-1.8-mpi-deprecations.patch,
  gnu/packages/patches/hdf5-mpi-deprecations.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/maths.scm (hdf5, hdf5-1.10)[source]: Use them.
 2019-02-07 21:20:47 -06:00
Eric Bavier
2bdf26f1c8
gnu: superlu-dist: Remove use of deprecated MPI1 symbols. 
* gnu/packages/patches/superlu-dist-fix-mpi-deprecations.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/maths.scm (superlu-dist)[source]: Use it.
 2019-02-07 21:20:23 -06:00
Nicolas Goaziou
00e18f9fa9
gnu: musescore: Update to 3.0.2. 
* gnu/packages/music.scm (musescore): Update to 3.0.2.
[source]: Add patch.
* gnu/packages/patches/musescore-fix-use_webengine.patch: New file.
* gnu/local.mk (dist_patch_DATA): Reference patch.
 2019-02-05 23:11:43 +01:00
Tobias Geerinckx-Rice
ab1019f165
gnu: nyx: Update to 2.1.0. 
* gnu/packages/tor.scm (nyx): Update to 2.1.0.
[source]: Remove patch.
* gnu/packages/patches/nyx-show-header-stats-with-python3.patch:
Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2019-02-05 18:47:09 +01:00
Leo Famulari
e36d043882
gnu: Remove unused patch 'mcron-install.patch'. 
This is a followup to commit cfbf6de18c.

* gnu/packages/patches/mcron-install.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
 2019-02-05 00:19:50 +01:00