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Author SHA1 Message Date
Ricardo Wurmus
45ad3fa9e1
gnu: r-gdtools: Update to 0.1.9. 
* gnu/packages/statistics.scm (r-gdtools): Update to 0.1.9.
 2019-06-29 01:34:45 +02:00
Ricardo Wurmus
2c4b38002e
gnu: r-cluster: Update to 2.1.0. 
* gnu/packages/statistics.scm (r-cluster): Update to 2.1.0.
 2019-06-29 01:34:44 +02:00
Ricardo Wurmus
d42fb7d293
gnu: r-future-apply: Update to 1.3.0. 
* gnu/packages/cran.scm (r-future-apply): Update to 1.3.0.
 2019-06-29 01:34:44 +02:00
Ricardo Wurmus
36ff60f539
gnu: r-bootstrap: Update to 2019.6. 
* gnu/packages/cran.scm (r-bootstrap): Update to 2019.6.
 2019-06-29 01:34:44 +02:00
Ricardo Wurmus
93e72161ae
gnu: r-rnifti: Update to 0.11.0. 
* gnu/packages/cran.scm (r-rnifti): Update to 0.11.0.
 2019-06-29 01:34:44 +02:00
Ricardo Wurmus
9f84c9e843
gnu: r-rgl: Update to 0.100.24. 
* gnu/packages/cran.scm (r-rgl): Update to 0.100.24.
 2019-06-29 01:34:44 +02:00
Ricardo Wurmus
da4754a3b1
gnu: r-remotes: Update to 2.1.0. 
* gnu/packages/cran.scm (r-remotes): Update to 2.1.0.
 2019-06-29 01:34:44 +02:00
Ricardo Wurmus
a634a76a06
gnu: r-bayestestr: Update to 0.2.2. 
* gnu/packages/cran.scm (r-bayestestr): Update to 0.2.2.
 2019-06-29 01:34:44 +02:00
Ricardo Wurmus
992e03d209
gnu: r-emmeans: Update to 1.3.5.1. 
* gnu/packages/cran.scm (r-emmeans): Update to 1.3.5.1.
 2019-06-29 01:34:44 +02:00
Ricardo Wurmus
56ab7acb96
gnu: r-ggstance: Update to 0.3.2. 
* gnu/packages/cran.scm (r-ggstance): Update to 0.3.2.
 2019-06-29 01:34:44 +02:00
Ricardo Wurmus
c46a16407b
gnu: r-flextable: Update to 0.5.5. 
* gnu/packages/cran.scm (r-flextable): Update to 0.5.5.
 2019-06-29 01:34:44 +02:00
Ricardo Wurmus
36c5f86fab
gnu: r-sjmisc: Update to 2.8.1. 
* gnu/packages/cran.scm (r-sjmisc): Update to 2.8.1.
 2019-06-29 01:34:44 +02:00
Ricardo Wurmus
c3447a92ee
gnu: r-prediction: Update to 0.3.14. 
* gnu/packages/cran.scm (r-prediction): Update to 0.3.14.
 2019-06-29 01:34:44 +02:00
Ricardo Wurmus
0d2e266220
gnu: r-officer: Update to 0.3.5. 
* gnu/packages/cran.scm (r-officer): Update to 0.3.5.
 2019-06-29 01:34:44 +02:00
Ricardo Wurmus
0ccb34584c
gnu: r-ggpubr: Update to 0.2.1. 
* gnu/packages/cran.scm (r-ggpubr): Update to 0.2.1.
 2019-06-29 01:34:43 +02:00
Ricardo Wurmus
a4bc73b236
gnu: r-ellipsis: Update to 0.2.0. 
* gnu/packages/cran.scm (r-ellipsis): Update to 0.2.0.
[propagated-inputs]: Add r-rlang.
 2019-06-29 01:34:43 +02:00
Ricardo Wurmus
dacf52e0a3
gnu: r-cgdsr: Update to 1.3.0. 
* gnu/packages/cran.scm (r-cgdsr): Update to 1.3.0.
[propagated-inputs]: Add r-httr.
 2019-06-29 01:34:43 +02:00
Ricardo Wurmus
22b2d8b97f
gnu: r-quantmod: Update to 0.4-15. 
* gnu/packages/cran.scm (r-quantmod): Update to 0.4-15.
 2019-06-29 01:34:43 +02:00
Ricardo Wurmus
f5ec882390
gnu: r-tinytex: Update to 0.14. 
* gnu/packages/cran.scm (r-tinytex): Update to 0.14.
 2019-06-29 01:34:43 +02:00
Ricardo Wurmus
db794146ac
gnu: r-xfun: Update to 0.8. 
* gnu/packages/cran.scm (r-xfun): Update to 0.8.
 2019-06-29 01:34:43 +02:00
Ricardo Wurmus
1f7e8d49c3
gnu: r-performanceanalytics: Update to 1.5.3. 
* gnu/packages/cran.scm (r-performanceanalytics): Update to 1.5.3.
 2019-06-29 01:34:43 +02:00
Ricardo Wurmus
4ae5f18a25
gnu: r-abbyyr: Update to 0.5.5. 
* gnu/packages/cran.scm (r-abbyyr): Update to 0.5.5.
 2019-06-29 01:34:43 +02:00
Ricardo Wurmus
5b86bcfa68
gnu: r-phangorn: Update to 2.5.5. 
* gnu/packages/bioinformatics.scm (r-phangorn): Update to 2.5.5.
 2019-06-29 01:34:43 +02:00
Ricardo Wurmus
7f17e60ab7
gnu: r-tximport: Update to 1.12.3. 
* gnu/packages/bioinformatics.scm (r-tximport): Update to 1.12.3.
 2019-06-29 01:34:43 +02:00
Ricardo Wurmus
dafd290d21
gnu: r-genomicfeatures: Update to 1.36.3. 
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.36.3.
 2019-06-29 01:34:43 +02:00
Ricardo Wurmus
c40bba2b36
gnu: r-genomicalignments: Update to 1.20.1. 
* gnu/packages/bioinformatics.scm (r-genomicalignments): Update to 1.20.1.
 2019-06-29 01:34:43 +02:00
Ricardo Wurmus
888085c36c
gnu: r-biomart: Update to 2.40.1. 
* gnu/packages/bioinformatics.scm (r-biomart): Update to 2.40.1.
 2019-06-29 01:34:43 +02:00
Ricardo Wurmus
f0c244229a
gnu: r-edger: Update to 3.26.5. 
* gnu/packages/bioinformatics.scm (r-edger): Update to 3.26.5.
 2019-06-29 01:34:43 +02:00
Ricardo Wurmus
0253b5d881
gnu: r-systempiper: Update to 1.18.2. 
* gnu/packages/bioinformatics.scm (r-systempiper): Update to 1.18.2.
 2019-06-29 01:34:42 +02:00
Ricardo Wurmus
3e265d968b
gnu: r-rsubread: Update to 1.34.4. 
* gnu/packages/bioconductor.scm (r-rsubread): Update to 1.34.4.
 2019-06-29 01:34:42 +02:00
Ricardo Wurmus
3c944fdace
gnu: r-genomicscores: Update to 1.8.1. 
* gnu/packages/bioconductor.scm (r-genomicscores): Update to 1.8.1.
 2019-06-29 01:34:42 +02:00
Ricardo Wurmus
aff3ecbfda
gnu: r-dose: Update to 3.10.2. 
* gnu/packages/bioconductor.scm (r-dose): Update to 3.10.2.
 2019-06-29 01:34:42 +02:00
Marius Bakke
4289d1d71c
gnu: python-llvmlite: Build against LLVM 7. 
This is a follow-up to commit c5296e205b.

* gnu/packages/llvm.scm (llvm-7, clang-runtime-7, clang-7): New public variables.
(python-llvmlite)[inputs]: Inherit from LLVM-7 instead of LLVM.
 2019-06-28 20:53:20 +02:00
Jakob L. Kreuze
4ee2cce327
gnu: Add beets-bandcamp. 
* gnu/packages/music.scm (beets-bandcamp): New variable.

Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
 2019-06-28 14:22:05 +02:00
Nicolas Goaziou
9d83e60e51
gnu: musescore: Update to 3.2. 
* gnu/packages/music.scm (musescore): Update to 3.2.
 2019-06-28 10:46:45 +02:00
Nicolas Goaziou
458f410bc2
gnu: snap: Update to 5. 
* gnu/packages/education.scm (snap): Update to 5.
 2019-06-28 10:11:12 +02:00
Efraim Flashner
5b786db86c
gnu: atlas: All phases return #t. 
* gnu/packages/maths.scm (atlas)[arguments]: Ensure all custom phases
return #t.
 2019-06-28 10:39:11 +03:00
Nicolas Goaziou
2668e06efd
gnu: krita: Update to 4.2.2. 
* gnu/packages/kde.scm (krita): Update to 4.2.2.
[source]: Don't use NAME in source URI.
[arguments]: Remove obsolete configure flags.
[native-inputs]: Add pkg-config.
[inputs]: Add quazip, reorder alphabetically.
 2019-06-28 09:34:25 +02:00
Nicolas Goaziou
09debcf5aa
gnu: Add quazip. 
* gnu/packages/compression.scm (quazip): New variable.
 2019-06-28 09:34:25 +02:00
Mark H Weaver
fbb5b688b6
gnu: linux-libre@4.14: Update to 4.14.131. 
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.131.
(%linux-libre-4.14-hash): Update hash.
 2019-06-27 18:58:45 -04:00
Mark H Weaver
1ad3e3f9f1
gnu: linux-libre@4.9: Update to 4.9.184. 
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.184.
 2019-06-27 18:58:06 -04:00
Mark H Weaver
9969b436af
gnu: linux-libre@4.4: Update to 4.4.184. 
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.184.
 2019-06-27 18:57:10 -04:00
Ricardo Wurmus
bae0f8af21
gnu: pigx-scrnaseq: Update to 0.0.8. 
* gnu/packages/bioinformatics.scm (pigx-scrnaseq): Update to 0.0.8.
 2019-06-27 23:23:29 +02:00
Rutger Helling
6ad087b821
gnu: mame: Update to 0.211. 
* gnu/packages/emulators.scm (mame): Update to 0.211.
 2019-06-27 13:28:33 +02:00
Ludovic Courtès
c30d117822
tests: Avoid TCP port collision between lint.scm and guix-daemon.sh. 
This could lead to random deadlocks in one of these two tests when
running "make check -j5".

* tests/guix-daemon.sh (tcp_socket): Change port to 9998 to avoid
collision with tests/lint.scm.
 2019-06-27 11:14:42 +02:00
Ludovic Courtès
08c95ba28d
ui: 'show-derivation-outputs' accepts <derivation-input> records. 
* guix/ui.scm (show-derivation-outputs): Handle <derivation-input>
records.
 2019-06-27 11:14:42 +02:00
Ludovic Courtès
d38d4ffa10
ui: 'show-what-to-build' accepts derivation inputs. 
This is a followup to f8a9f99cd6.

* guix/ui.scm (show-what-to-build)[inputs]: New variables.
[substitutable-info]: Build the derivation list from INPUTS.
Pass INPUTS to 'derivation-build-plan'.
 2019-06-27 11:14:42 +02:00
Ludovic Courtès
066eeae1a1
packages: 'specification->package+output' distinguishes "no output specified". 
Until now the caller couldn't tell the different between a spec like
"foo:out" and one like "foo".  This change allows users to distinguish
between these two cases.

* gnu/packages.scm (specification->package+output): Disable output
membership test when OUTPUT = #f and SUB-DRV = #f.
* tests/packages.scm ("specification->package+output")
("specification->package+output invalid output")
("specification->package+output no default output")
("specification->package+output invalid output, no default"): New tests.
 2019-06-27 11:14:41 +02:00
Ludovic Courtès
7c690a4738
derivations: 'build-derivations' can be passed derivation inputs. 
* guix/derivations.scm (build-derivations): Accept <derivation-input>
records among DERIVATIONS.
* tests/derivations.scm ("build-derivations with specific output"): Test
it.
 2019-06-27 11:14:41 +02:00
Ludovic Courtès
fd951cd543
derivations: 'derivation' preserves pointer equality. 
* guix/derivations.scm (derivation): Check if FILE is already in
%DERIVATION-CACHE and return it if it is.
 2019-06-27 11:14:41 +02:00